Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010515

Physical Location & Seq

Genomic Coordinates Forward (+)

13206878 .. 13208053

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGGTTCCTGACGGTGGTGGAAGTTCAGGCGGTGGAGACGGTGATGGGACGCCTTCCCGGCCACTGTCGTCGAAAACCCAGTTTCCAAAAACCAGCATTGGTTTGAAACGAGCAGAGAACGAGCTTGATCAAGTCAAAGAAGAAGTGACCGAACTGAAAAAAGAGATAAAGGCATTGACTTCTTCCAAAGGCGGAAACTTTGACCTCTCGTCTTCCTCGTCTTCCTCCGCCGCTCCGCCGAACCGAGCGGCGGAATTGCTCCACGTGAAGGAAGAAACAGTAGATGTTGTGGTTGTGGAGGATGATGAATTCGACGGTGGAGGCCACTTCAACACCATCAACGGCTGTGGTGGTGATTTTGGGTCTTCTTCCATGGAGCTGCCTAAACCCATGGAGGGTTTGCGCGAGGTGGGCCCACCGCCGTTCTTGAACAAGACTTTTCAGATGGTGGACGACCCGGAAACCGATTCCGTCGTTTCGTGGAGTGATACTCGGCAGAGCTTCATTGTTTGGGACTTGTACGAATTCTCCAGGACTCTCCTGCCCAAATACTTCAAGCACAACAATATCTCAAGCTTCATTCGCCAGCTCAACACTTATTCAAAAAGGTTGATCCGGACAGGTGGGAGTTTGCAAATGAAGGGTTCCAGGGTGGGAAGAAGCACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

225

Amino Acids

24.3

Weight (kDa)

5.34

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	143 - 202	3.5e-20	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010515)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07800
malus_domestica	MD02G1082000.v1.1 MD12G1184500.v1.1 MD15G1209400.v1.1
prunus_persica	Prupe.7G206900_v2.0.a1
pyrus_communis	pycom02g06490 pycom15g18570
rosa_chinensis	RchiOBHm_Chr2g0093671
rosa_laevigata	RLG00000016427
rosa_roxburghii	Rroxscaffold_2G00147910
rosa_rugosa	Rorug02G0038700 Rorug05G0356600
rosa_samantha	Rh2AG085100 Rh2BG085600 Rh2CG087900 Rh2DG083400 Rh3AG094700 Rh3CG099000 Rh3DG098400
rosa_wichuraiana	Rw0G013900 Rw3G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 251
AccII	CGCG	1 cut(s)	408
AccIII	TCCGGA	1 cut(s)	618
AciI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	311, 527
AcvI	CACGTG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
AgsI	TTSAA	5 cut(s)	109, 334, 433, 559, 606
AhdI	GACNNNNNGTC	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	533, 650
AluBI	AGCT	5 cut(s)	127, 382, 504, 579, 592
AluI	AGCT	5 cut(s)	127, 382, 504, 579, 592
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	618
AoxI	GGCC	3 cut(s)	62, 325, 415
ApaI	GGGCCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	311, 527
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	415, 416
AsuC2I	CCSGG	2 cut(s)	61, 461
AsuHPI	GGTGA	2 cut(s)	56, 368
BaeGI	GKGCMC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	419
BbrPI	CACGTG	1 cut(s)	268
BbsI	GAAGAC	3 cut(s)	207, 216, 360
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	3 cut(s)	41, 347, 442
BceAI	ACGGC	2 cut(s)	361, 409
BciT130I	CCWGG	2 cut(s)	535, 652
BclI	TGATCA	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	61, 461
BcoDI	GTCTC	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	234, 252, 383
BlsI	GCNGC	3 cut(s)	235, 253, 384
Bme1390I	CCNGG	4 cut(s)	61, 461, 535, 652
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	415, 416
BmiI	GGNNCC	3 cut(s)	9, 417, 649
BmrFI	CCNGG	4 cut(s)	61, 461, 535, 652
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	3 cut(s)	207, 216, 360
BplI	GAGNNNNNCTC	2 cut(s)	478, 510
BpmI	CTGGAG	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	559
BpuMI	CCSGG	2 cut(s)	61, 461
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	375, 393, 651
BsaWI	WCCGGW	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
Bse1I	ACTGG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	535, 652
BseDI	CCNNGG	3 cut(s)	375, 393, 651
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
BseNI	ACTGG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	64, 327, 417
BsiSI	CCGG	3 cut(s)	61, 461, 619
BslFI	GGGAC	2 cut(s)	64, 530
BslI	CCNNNNNNNGG	4 cut(s)	17, 253, 271, 398
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	64, 530
BsnI	GGCC	3 cut(s)	64, 327, 417
Bsp120I	GGGCCC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp13I	TCCGGA	1 cut(s)	618
Bsp143I	GATC	2 cut(s)	130, 615
Bsp19I	CCATGG	2 cut(s)	375, 393
BspACI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
BspANI	GGCC	3 cut(s)	64, 327, 417
BspEI	TCCGGA	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	3 cut(s)	9, 417, 649
BspPI	GGATC	1 cut(s)	610
BsrBI	CCGCTC	2 cut(s)	236, 251
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	375, 393, 651
BssMI	GATC	2 cut(s)	130, 615
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	375, 393
Bst2UI	CCWGG	2 cut(s)	535, 652
Bst4CI	ACNGT	5 cut(s)	17, 44, 69, 283, 320
BstACI	GRCGYC	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	590
BstDSI	CCRYGG	2 cut(s)	375, 393
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	2 cut(s)	133, 618
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	130, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
BstNI	CCWGG	2 cut(s)	535, 652
BstSCI	CCNGG	4 cut(s)	59, 459, 533, 650
BstSLI	GKGCMC	1 cut(s)	419
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	3 cut(s)	207, 216, 360
BsuRI	GGCC	3 cut(s)	64, 327, 417
BtgI	CCRYGG	2 cut(s)	375, 393
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	590
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	415, 416
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	2 cut(s)	376, 394
CviJI	RGCY	9 cut(s)	64, 127, 327, 348, 382, 417, 504, 579, 592
CviKI_1	RGCY	9 cut(s)	64, 127, 327, 348, 382, 417, 504, 579, 592
CviQI	GTAC	1 cut(s)	523
DpnI	GATC	2 cut(s)	132, 617
DpnII	GATC	2 cut(s)	130, 615
DriI	GACNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EciI	GGCGGA	4 cut(s)	210, 220, 228, 269
Eco130I	CCWWGG	2 cut(s)	375, 393
Eco24I	GRGCYC	1 cut(s)	419
Eco72I	CACGTG	1 cut(s)	268
EcoRI	GAATTC	2 cut(s)	311, 527
EcoRII	CCWGG	2 cut(s)	533, 650
EcoT14I	CCWWGG	2 cut(s)	375, 393
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	2 cut(s)	375, 393
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	379, 397
FaiI	YATR	2 cut(s)	377, 395
FalI	AAGNNNNNCTT	1 cut(s)	652
FaqI	GGGAC	2 cut(s)	64, 530
FatI	CATG	2 cut(s)	375, 393
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	234, 252, 383
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	234, 252, 383
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	3 cut(s)	234, 252, 383
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	64, 327, 417
HapII	CCGG	3 cut(s)	61, 461, 619
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	408
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	379, 397
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	470, 538
HpaII	CCGG	3 cut(s)	61, 461, 619
HphI	GGTGA	2 cut(s)	56, 368
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	3 cut(s)	11, 430, 619
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	76, 320, 479
HpyAV	CCTTC	3 cut(s)	66, 265, 637
HpyCH4III	ACNGT	5 cut(s)	17, 44, 69, 283, 320
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	379, 397
HspAI	GCGC	1 cut(s)	406
Kpn2I	TCCGGA	1 cut(s)	618
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 615
LmnI	GCTCC	3 cut(s)	241, 267, 379
Lsp1109I	GCAGC	1 cut(s)	369
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	132, 617
MbiI	CCGCTC	2 cut(s)	236, 251
MboI	GATC	2 cut(s)	130, 615
MboII	GAAGA	8 cut(s)	155, 177, 207, 216, 287, 360, 363, 672
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	3 cut(s)	257, 311, 527
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	218, 229, 238, 295, 317, 391, 403
MroI	TCCGGA	1 cut(s)	618
MspI	CCGG	3 cut(s)	61, 461, 619
MspR9I	CCNGG	4 cut(s)	61, 461, 535, 652
MvaI	CCWGG	2 cut(s)	535, 652
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	61, 414, 585
NciI	CCSGG	2 cut(s)	61, 461
NcoI	CCATGG	2 cut(s)	375, 393
NdeII	GATC	2 cut(s)	130, 615
NlaIII	CATG	2 cut(s)	379, 397
NlaIV	GGNNCC	3 cut(s)	9, 417, 649
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	235, 253, 384
PleI	GAGTC	1 cut(s)	532
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	533, 650
PspCI	CACGTG	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	533, 650
PspN4I	GGNNCC	3 cut(s)	9, 417, 649
PspOMI	GGGCCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	415, 416
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SatI	GCNGC	3 cut(s)	234, 252, 383
Sau3AI	GATC	2 cut(s)	130, 615
Sau96I	GGNCC	2 cut(s)	415, 416
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	4 cut(s)	61, 461, 535, 652
SduI	GDGCHC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	3 cut(s)	257, 311, 527
SsiI	CCGC	8 cut(s)	33, 195, 231, 234, 239, 251, 254, 422
StyD4I	CCNGG	4 cut(s)	59, 459, 533, 650
StyI	CCWWGG	2 cut(s)	375, 393
TaaI	ACNGT	5 cut(s)	17, 44, 69, 283, 320
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	74, 315
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	257, 311, 527
TauI	GCSGC	2 cut(s)	236, 254
TfiI	GAWTC	1 cut(s)	470
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	324, 496, 571, 656
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	72
XapI	RAATTY	2 cut(s)	311, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.