pycom15g19080
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014750
Physical Location & Seq
Forward (+)
13567528 .. 13569544
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGTTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGAGAAAACCATACGTTGGTACAGACGGGCTAAAAAGAGGAGCATGGTGTGCTGAGGAAGATAAAGTCCTTACTGACTACATCAGAACTCATGGAGAAGGAAAATGGAGACATGTTGCTAAAAAAGCTGGGTTGAATCGGAGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTATCTTAAGCCTGATGTTAAGAGAGGCAACATTTCTCCGGAAGAAGAAGACCTCATTATCAGATTGCACAAGCTTCTTGGAAACAGGTGGTCTCTCATAGCCGGAAGATTGCCCGGTCGAACAGATAATGAAATCAAGAACTTCTGGAATATTAGTTTGAGCAAAAGAATTCAAGAGGAAAGACCTCGACGTGTCACTAATAGCAGTCAGGCGCCTACTGATGGCGATAATCGTGATCAACTTAGTAATTATTGTTCTAATCGTTCCAAAGACGACGATGATCAATCCAATCCAGTGAAATCCAATCCGGTGGTACTATCAGACATCTCTGGTGACCGTGATCAGAATTCATCGCTGAGTTTTCTAAGAGATTTCGACAGTTACATCCATGGCCATTCACACAAGGCCGAAATCAATGGATTTCGGAATTATATGGTGGATGATTTGAACTTCGTTGGACATAACCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009653 GO:0009698 GO:0009699 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010023 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0072330 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.71

Weight (kDa)

8.92

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 75 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 31 - 89 2.4e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 81 - 123 3.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 85 - 131 3.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccB7I CCANNNNNTGG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 2 cut(s) 387, 565
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 2 cut(s) 67, 534
AfiI CCNNNNNNNGG 2 cut(s) 62, 440
AflII CTTAAG 1 cut(s) 224
AflIII ACRYGT 2 cut(s) 157, 409
AgsI TTSAA 4 cut(s) 181, 217, 392, 667
AjiI CACGTC 1 cut(s) 410
AluBI AGCT 2 cut(s) 173, 292
AluI AGCT 2 cut(s) 173, 292
Alw26I GTCTC 2 cut(s) 148, 315
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 610, 624
ApoI RAATTY 2 cut(s) 387, 565
AspLEI GCGC 1 cut(s) 433
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 563
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 99
BccI CCATC 3 cut(s) 37, 204, 434
BclI TGATCA 3 cut(s) 454, 499, 559
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 148, 315
BfoI RGCGCY 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 607
BsaWI WCCGGW 2 cut(s) 256, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 440
Bse1I ACTGG 1 cut(s) 512
BseAI TCCGGA 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 2 cut(s) 603, 664
BseLI CCNNNNNNNGG 2 cut(s) 62, 440
BseMII CTCAG 2 cut(s) 90, 566
BseNI ACTGG 1 cut(s) 512
BseRI GAGGAG 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 612, 626
BshNI GGYRCC 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 257, 321, 333, 527
BslI CCNNNNNNNGG 2 cut(s) 62, 440
BsmAI GTCTC 2 cut(s) 148, 315
BsnI GGCC 2 cut(s) 612, 626
Bso31I GGTCTC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 454, 499, 559
Bsp19I CCATGG 1 cut(s) 607
BspANI GGCC 2 cut(s) 612, 626
BspCNI CTCAG 2 cut(s) 91, 567
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 430
BspTI CTTAAG 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 3 cut(s) 454, 499, 559
BssNI GRCGYC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 607
Bst4CI ACNGT 2 cut(s) 557, 599
Bst6I CTCTTC 2 cut(s) 3, 188
BstACI GRCGYC 1 cut(s) 431
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 95
BstDEI CTNAG 4 cut(s) 99, 461, 575, 584
BstDSI CCRYGG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 551
BstF5I GGATG 2 cut(s) 603, 664
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 3 cut(s) 457, 502, 562
BstMAI GTCTC 2 cut(s) 148, 315
BstMBI GATC 3 cut(s) 454, 499, 559
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 95, 170
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 529
BsuRI GGCC 2 cut(s) 612, 626
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 2 cut(s) 223, 555
BtrI CACGTC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 603, 664
BtsIMutI CAGTG 1 cut(s) 519
CfoI GCGC 1 cut(s) 433
Csp6I GTAC 2 cut(s) 66, 533
CviAII CATG 4 cut(s) 90, 137, 158, 608
CviJI RGCY 7 cut(s) 76, 173, 229, 292, 320, 612, 626
CviKI_1 RGCY 7 cut(s) 76, 173, 229, 292, 320, 612, 626
CviQI GTAC 2 cut(s) 66, 533
DdeI CTNAG 4 cut(s) 99, 461, 575, 584
DinI GGCGCC 1 cut(s) 432
DpnI GATC 3 cut(s) 456, 501, 561
DpnII GATC 3 cut(s) 454, 499, 559
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 3, 188
EarI CTCTTC 2 cut(s) 3, 188
Eco130I CCWWGG 1 cut(s) 607
Eco31I GGTCTC 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 551
EcoO65I GGTNACC 1 cut(s) 551
EcoRI GAATTC 2 cut(s) 387, 565
EcoT14I CCWWGG 1 cut(s) 607
EgeI GGCGCC 1 cut(s) 432
EheI GGCGCC 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 4 cut(s) 93, 140, 161, 611
FaiI YATR 9 cut(s) 58, 91, 138, 159, 317, 609, 651, 653, 681
FatI CATG 4 cut(s) 89, 136, 157, 607
FbaI TGATCA 3 cut(s) 454, 499, 559
FokI GGATG 2 cut(s) 590, 671
GlaI GCGC 1 cut(s) 432
GsaI CCCAGC 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 2 cut(s) 612, 626
HapII CCGG 4 cut(s) 257, 321, 333, 527
HhaI GCGC 1 cut(s) 433
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 4 cut(s) 93, 140, 161, 611
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 181
HpaII CCGG 4 cut(s) 257, 321, 333, 527
HphI GGTGA 1 cut(s) 563
Hpy188I TCNGA 6 cut(s) 131, 186, 281, 541, 564, 645
Hpy188III TCNNGA 5 cut(s) 257, 355, 364, 392, 452
Hpy99I CGWCG 2 cut(s) 411, 497
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 557, 599
HpyCH4IV ACGT 2 cut(s) 60, 409
HpyCH4V TGCA 2 cut(s) 201, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 170
HpyF3I CTNAG 4 cut(s) 99, 461, 575, 584
HpySE526I ACGT 2 cut(s) 60, 409
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 4 cut(s) 93, 140, 161, 611
HspAI GCGC 1 cut(s) 431
KasI GGCGCC 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 256
Ksp22I TGATCA 3 cut(s) 454, 499, 559
Kzo9I GATC 3 cut(s) 454, 499, 559
LmnI GCTCC 1 cut(s) 86
MaeII ACGT 2 cut(s) 60, 409
MaeIII GTNAC 3 cut(s) 412, 551, 599
MalI GATC 3 cut(s) 456, 501, 561
MboI GATC 3 cut(s) 454, 499, 559
MboII GAAGA 7 cut(s) 20, 116, 205, 272, 275, 278, 336
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 5 cut(s) 217, 387, 466, 565, 646
MluNI TGGCCA 1 cut(s) 612
Mly113I GGCGCC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 6 cut(s) 77, 94, 236, 281, 388, 414
Mox20I TGGCCA 1 cut(s) 612
MroI TCCGGA 1 cut(s) 256
MscI TGGCCA 1 cut(s) 612
MseI TTAA 2 cut(s) 225, 237
Msp20I TGGCCA 1 cut(s) 612
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 4 cut(s) 257, 321, 333, 527
MspR9I CCNGG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 95, 170
NarI GGCGCC 1 cut(s) 431
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 607
NdeII GATC 3 cut(s) 454, 499, 559
NlaIII CATG 4 cut(s) 93, 140, 161, 611
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 2 cut(s) 412, 551
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 62
PluTI GGCGCC 1 cut(s) 434
PscI ACATGT 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 432
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
RsaI GTAC 2 cut(s) 67, 534
RsaNI GTAC 2 cut(s) 66, 533
SaqAI TTAA 2 cut(s) 225, 237
Sau3AI GATC 3 cut(s) 454, 499, 559
ScrFI CCNGG 1 cut(s) 333
SetI ASST 7 cut(s) 63, 175, 273, 294, 308, 406, 412
SfoI GGCGCC 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 217, 387, 466, 565, 646
SspDI GGCGCC 1 cut(s) 430
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 2 cut(s) 557, 599
TaiI ACGT 2 cut(s) 63, 412
TaqI TCGA 3 cut(s) 337, 406, 594
TasI AATT 5 cut(s) 217, 387, 466, 565, 646
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 225, 237
Tru9I TTAA 2 cut(s) 225, 237
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 2 cut(s) 412, 551
Tsp45I GTSAC 2 cut(s) 412, 551
TspDTI ATGAA 2 cut(s) 363, 558
TspRI CASTG 1 cut(s) 519
Van91I CCANNNNNTGG 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 224
XapI RAATTY 2 cut(s) 387, 565
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.