pycom15g19350

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011119
Physical Location & Seq
Reverse (-)
13758091 .. 13761485
3395 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
ATGAATACATTCAGTTCATACAGTGTTAGGGATAACAAGAGGTACGTAAGCGTTACAGCAACGTGGCAACTGCTGGTTGGTTACGGTTGTTTAATAAGAAGCCCAATCAGTGGATTCCAGAGCACTGGAGTGGCCTCCCCCTTCACCATCTATTCAATCAGCAGAATCTCCGTCGATCTTCTCCTCCGACACATCACCAAAAACATGGCTCGGCTGACGCTATTCTTGTCCGCCACCTTGGTCCTGGCGGCGATCAGCTGCGTCGCGGCAGCATCGAGCTTCGATGAGTCCAACCCAATCCGATTGGTGTCCGACTCCCTCCGTGACATGGAGGAGCAAGTCGTCCAAGTCCTCGGCAGCTGCCGCCACGTCCTCTCCTTCGCCCGCTTCGCTCACAGGTACGGGAAGAAGTACGAGAGCGCGGAGGAGATGAAGCTGCGGTATGCGATTTTCTCGGAGAATAAGAAGCTGATTCGATCTACGAATAAGAAGGGCTTGCCTTACACTCTTGCTCTCAATCGGTTTGCTGATTGGAGCTGGGAAGAGTTCACAAGGCACAGGTTGGGAGCTGCTCAGAACTGCTCTGCCACCACAAAGGGCAACCACAAGCTCACTGATGCCGTTCTTCCTGAATCGAAAAACTGGAAAGAAGAAGGCATAGTGACTCCAGTTAAAGATCAAGGTCACTGTCGATCTTGCTGGACATTCAGCACCACTGGAGCTCTCGAGGCTGCGTATGTGCAGGCATTCGGAAAGCAAATCTCCCTATCGGAGCAGCAGCTTGTGGATTGCGCTGGCGCTTTCAACAATAACGGCTGCAGTGGTGGGTTACCATCTCAAGCATTTGAGTACATCAAGTACAATGGCGGTCTTGACACCGAGGCTGCTTATCCGTATGTTGGAGTCGACGGTGTTTGCAAATACTCGGCAGAAAATATTGGTGTCCAAGTCGTTGACTCTGTCAATATCACCCTGGGTGCTGAAGAAGAATTGAAGCATGCTGTTGCATTTGTGCGGCCAGTCAGTGTGGCGTTTCAGGTCATCAATGGTTTCCGATTTTACAAGTCGGGAGTTTACACCAGTGACACATGCGGTACTGGCCCCATGGATGTGAACCATGCAGTTCTTGCAGTTGGGTACGGAGTTGAAGGCGGCGTCCCGTACTGGCTCATCAAGAACTCTTGGGGAGAAAGCTGGGGCGACAATGGCTACTTCAAGATGGAGTATGGGAAGAACATGTGTGGTGTTGCAACATGTGCATCGTACCCGGTTGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04210 map04142 map04210
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

427

Amino Acids

46.77

Weight (kDa)

8.16

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 127 - 183 5.1e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 209 - 424 6e-77 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca FvH4_1g08760
malus_domestica MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica Prupe.7G198500_v2.0.a1
pyrus_communis pycom02g07310 pycom15g19350
rosa_chinensis RchiOBHm_Chr2g0095151
rosa_laevigata RLG00000016536
rosa_multiflora Rmu_sc0004439.1_g000010
rosa_roxburghii Rroxscaffold_2G00146620
rosa_samantha Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana Rw2G007270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AccI GTMKAC 1 cut(s) 906
AccII CGCG 3 cut(s) 266, 422, 1277
AcoI YGGCCR 1 cut(s) 1016
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 1155
AfaI GTAC 9 cut(s) 44, 401, 413, 851, 860, 1096, 1139, 1163, 1265
AfiI CCNNNNNNNGG 3 cut(s) 110, 328, 899
AflIII ACRYGT 2 cut(s) 1236, 1253
AgsI TTSAA 5 cut(s) 156, 805, 994, 1148, 1216
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 2 cut(s) 243, 972
AleI CACNNNNGTG 1 cut(s) 128
Alw21I GWGCWC 2 cut(s) 125, 724
Ama87I CYCGRG 1 cut(s) 725
AoxI GGCC 3 cut(s) 132, 1016, 1099
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 422, 794, 800
AspS9I GGNCC 2 cut(s) 241, 1100
AsuC2I CCSGG 1 cut(s) 1268
AsuHPI GGTGA 3 cut(s) 136, 187, 961
AvaI CYCGRG 1 cut(s) 725
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 724
Bbv12I GWGCWC 2 cut(s) 125, 724
BccI CCATC 3 cut(s) 155, 841, 1213
BceAI ACGGC 2 cut(s) 605, 829
BciT130I CCWGG 2 cut(s) 245, 974
BcnI CCSGG 1 cut(s) 1268
BfmI CTRYAG 1 cut(s) 817
BfoI RGCGCY 1 cut(s) 801
Bme1390I CCNGG 3 cut(s) 245, 974, 1268
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 725
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 241, 1100
BmiI GGNNCC 1 cut(s) 1102
BmrFI CCNGG 3 cut(s) 245, 974, 1268
BmsI GCATC 3 cut(s) 281, 607, 1268
BpmI CTGGAG 3 cut(s) 147, 651, 738
BpuEI CTTGAG 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 1268
BsaAI YACGTR 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 1155
BsaJI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 328, 899
Bse1I ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BseBI CCWGG 2 cut(s) 245, 974
BseDI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BseGI GGATG 1 cut(s) 1114
BseLI CCNNNNNNNGG 3 cut(s) 110, 328, 899
BseMII CTCAG 1 cut(s) 587
BseNI ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BseRI GAGGAG 3 cut(s) 173, 347, 440
BseYI CCCAGC 2 cut(s) 537, 1194
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 3 cut(s) 266, 422, 1277
BshFI GGCC 3 cut(s) 134, 1018, 1101
BsiHKAI GWGCWC 2 cut(s) 125, 724
BsiHKCI CYCGRG 1 cut(s) 725
BsiSI CCGG 1 cut(s) 1268
BslFI GGGAC 1 cut(s) 1142
BslI CCNNNNNNNGG 3 cut(s) 110, 328, 899
BsmFI GGGAC 1 cut(s) 1142
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 3 cut(s) 134, 1018, 1101
BsoBI CYCGRG 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 125, 724
Bsp143I GATC 5 cut(s) 175, 252, 476, 676, 692
Bsp19I CCATGG 1 cut(s) 1104
BspANI GGCC 3 cut(s) 134, 1018, 1101
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 3 cut(s) 266, 422, 1277
BspLI GGNNCC 1 cut(s) 1102
BspMAI CTGCAG 1 cut(s) 821
BsrI ACTGG 8 cut(s) 130, 647, 668, 721, 1019, 1080, 1102, 1169
BssECI CCNNGG 6 cut(s) 237, 352, 879, 972, 973, 1104
BssMI GATC 5 cut(s) 175, 252, 476, 676, 692
BssNI GRCGYC 1 cut(s) 1155
BssT1I CCWWGG 2 cut(s) 237, 1104
Bst2UI CCWGG 2 cut(s) 245, 974
Bst4CI ACNGT 4 cut(s) 23, 86, 689, 911
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 1155
BstAPI GCANNNNNTGC 2 cut(s) 1127, 1256
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 5 cut(s) 385, 497, 744, 796, 999
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 1104
BstEII GGTNACC 1 cut(s) 828
BstF5I GGATG 1 cut(s) 1114
BstFNI CGCG 3 cut(s) 266, 422, 1277
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 3 cut(s) 422, 794, 800
BstKTI GATC 5 cut(s) 178, 255, 479, 679, 695
BstMBI GATC 5 cut(s) 175, 252, 476, 676, 692
BstMWI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
BstNI CCWGG 2 cut(s) 245, 974
BstNSI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
BstPI GGTNACC 1 cut(s) 828
BstSCI CCNGG 3 cut(s) 243, 972, 1266
BstSFI CTRYAG 1 cut(s) 817
BstSNI TACGTA 1 cut(s) 46
BstUI CGCG 3 cut(s) 266, 422, 1277
BstXI CCANNNNNNTGG 2 cut(s) 125, 205
BsuRI GGCC 3 cut(s) 134, 1018, 1101
BtgI CCRYGG 1 cut(s) 1104
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 1114
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 9 cut(s) 28, 115, 123, 612, 685, 714, 826, 1030, 1087
Cac8I GCNNGC 5 cut(s) 385, 497, 744, 796, 999
CfoI GCGC 3 cut(s) 422, 794, 800
Cfr13I GGNCC 2 cut(s) 241, 1100
CseI GACGC 3 cut(s) 226, 250, 1144
Csp6I GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
CviAII CATG 8 cut(s) 205, 328, 998, 1089, 1105, 1118, 1237, 1254
CviQI GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
DdeI CTNAG 1 cut(s) 573
DpnI GATC 5 cut(s) 177, 254, 478, 678, 694
DpnII GATC 5 cut(s) 175, 252, 476, 676, 692
EaeI YGGCCR 1 cut(s) 1016
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
EciI GGCGGA 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 722
Eco105I TACGTA 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 237, 1104
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 725
Eco91I GGTNACC 1 cut(s) 828
EcoICRI GAGCTC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 243, 972
EcoT14I CCWWGG 2 cut(s) 237, 1104
EcoT38I GRGCYC 1 cut(s) 724
ErhI CCWWGG 2 cut(s) 237, 1104
FaeI CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
FalI AAGNNNNNCTT 2 cut(s) 479, 511
FaqI GGGAC 1 cut(s) 1142
FatI CATG 8 cut(s) 204, 327, 997, 1088, 1104, 1117, 1236, 1253
FauI CCCGC 1 cut(s) 392
FblI GTMKAC 1 cut(s) 906
FokI GGATG 1 cut(s) 1121
FriOI GRGCYC 1 cut(s) 724
GlaI GCGC 3 cut(s) 421, 793, 799
GsaI CCCAGC 2 cut(s) 541, 1198
GsuI CTGGAG 3 cut(s) 147, 651, 738
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 3 cut(s) 134, 1018, 1101
HapII CCGG 1 cut(s) 1268
HgaI GACGC 3 cut(s) 226, 250, 1144
HhaI GCGC 3 cut(s) 422, 794, 800
Hin1I GRCGYC 1 cut(s) 1155
Hin1II CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
Hin6I GCGC 3 cut(s) 420, 792, 798
HinP1I GCGC 3 cut(s) 420, 792, 798
HincII GTYRAC 2 cut(s) 907, 955
HindII GTYRAC 2 cut(s) 907, 955
HinfI GANTC 9 cut(s) 114, 165, 287, 314, 472, 632, 664, 903, 956
HpaII CCGG 1 cut(s) 1268
HphI GGTGA 3 cut(s) 136, 187, 961
Hpy166II GTNNAC 5 cut(s) 549, 907, 955, 1075, 1114
Hpy188I TCNGA 8 cut(s) 188, 302, 313, 457, 576, 752, 772, 1055
Hpy188III TCNNGA 7 cut(s) 118, 629, 725, 872, 1068, 1174, 1216
Hpy8I GTNNAC 5 cut(s) 549, 907, 955, 1075, 1114
Hpy99I CGWCG 3 cut(s) 176, 266, 911
HpyAV CCTTC 5 cut(s) 151, 388, 484, 647, 1142
HpyCH4III ACNGT 4 cut(s) 23, 86, 689, 911
HpyCH4IV ACGT 3 cut(s) 45, 62, 369
HpyCH4V TGCA 8 cut(s) 742, 819, 918, 1007, 1121, 1130, 1250, 1259
HpyF10VI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 3 cut(s) 45, 62, 369
Hsp92I GRCGYC 1 cut(s) 1155
Hsp92II CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
HspAI GCGC 3 cut(s) 420, 792, 798
Kzo9I GATC 5 cut(s) 175, 252, 476, 676, 692
LmnI GCTCC 5 cut(s) 334, 534, 566, 719, 772
LweI GCATC 3 cut(s) 281, 607, 1268
MaeII ACGT 3 cut(s) 45, 62, 369
MaeIII GTNAC 7 cut(s) 52, 80, 323, 661, 683, 828, 1082
MalI GATC 5 cut(s) 177, 254, 478, 678, 694
MboI GATC 5 cut(s) 175, 252, 476, 676, 692
MboII GAAGA 8 cut(s) 170, 418, 554, 617, 662, 995, 998, 1243
MhlI GDGCHC 2 cut(s) 125, 724
MluCI AATT 1 cut(s) 989
MlyI GAGTC 5 cut(s) 296, 308, 658, 912, 950
MmeI TCCRAC 4 cut(s) 211, 315, 336, 880
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 92, 672
MslI CAYNNNNRTG 2 cut(s) 128, 1109
MspA1I CMGCKG 2 cut(s) 258, 360
MspI CCGG 1 cut(s) 1268
MspR9I CCNGG 3 cut(s) 245, 974, 1268
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 245, 974
MvnI CGCG 3 cut(s) 266, 422, 1277
MwoI GCNNNNNNNGC 7 cut(s) 363, 389, 728, 1098, 1127, 1206, 1256
NciI CCSGG 1 cut(s) 1268
NcoI CCATGG 1 cut(s) 1104
NdeII GATC 5 cut(s) 175, 252, 476, 676, 692
NlaIII CATG 8 cut(s) 208, 331, 1001, 1092, 1108, 1121, 1240, 1257
NlaIV GGNNCC 1 cut(s) 1102
NmeAIII GCCGAG 3 cut(s) 190, 333, 905
NmuCI GTSAC 4 cut(s) 323, 661, 683, 1082
NspI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
OliI CACNNNNGTG 1 cut(s) 128
PaeI GCATGC 1 cut(s) 1001
PaeR7I CTCGAG 1 cut(s) 725
PasI CCCWGGG 1 cut(s) 973
PciI ACATGT 2 cut(s) 1236, 1253
PctI GAATGC 1 cut(s) 746
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 114, 165, 472, 632
PflFI GACNNNGTC 1 cut(s) 959
PflMI CCANNNNNTGG 1 cut(s) 110
PleI GAGTC 5 cut(s) 295, 308, 658, 911, 950
PpsI GAGTC 5 cut(s) 295, 308, 658, 911, 950
Ppu21I YACGTR 1 cut(s) 46
PscI ACATGT 2 cut(s) 1236, 1253
Psp124BI GAGCTC 1 cut(s) 724
Psp6I CCWGG 2 cut(s) 243, 972
PspEI GGTNACC 1 cut(s) 828
PspFI CCCAGC 2 cut(s) 537, 1194
PspGI CCWGG 2 cut(s) 243, 972
PspN4I GGNNCC 1 cut(s) 1102
PspPI GGNCC 2 cut(s) 241, 1100
PstI CTGCAG 1 cut(s) 821
PsyI GACNNNGTC 1 cut(s) 959
PvuII CAGCTG 2 cut(s) 258, 360
RsaI GTAC 9 cut(s) 44, 401, 413, 851, 860, 1096, 1139, 1163, 1265
RsaNI GTAC 9 cut(s) 43, 400, 412, 850, 859, 1095, 1138, 1162, 1264
RseI CAYNNNNRTG 2 cut(s) 128, 1109
SacI GAGCTC 1 cut(s) 724
SalI GTCGAC 1 cut(s) 905
SaqAI TTAA 2 cut(s) 92, 672
Sau3AI GATC 5 cut(s) 175, 252, 476, 676, 692
Sau96I GGNCC 2 cut(s) 241, 1100
SchI GAGTC 5 cut(s) 296, 308, 658, 912, 950
ScrFI CCNGG 3 cut(s) 245, 974, 1268
SduI GDGCHC 2 cut(s) 125, 724
SfaNI GCATC 3 cut(s) 281, 607, 1268
SfcI CTRYAG 1 cut(s) 817
Sfr274I CTCGAG 1 cut(s) 725
SinI GGWCC 1 cut(s) 241
SlaI CTCGAG 1 cut(s) 725
SmiMI CAYNNNNRTG 2 cut(s) 128, 1109
SmlI CTYRAG 2 cut(s) 725, 837
SmoI CTYRAG 2 cut(s) 725, 837
SnaBI TACGTA 1 cut(s) 46
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 1 cut(s) 989
SspI AATATT 1 cut(s) 937
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 3 cut(s) 243, 972, 1266
StyI CCWWGG 2 cut(s) 237, 1104
TaaI ACNGT 4 cut(s) 23, 86, 689, 911
TaiI ACGT 3 cut(s) 48, 65, 372
TaqI TCGA 8 cut(s) 174, 275, 282, 475, 635, 691, 726, 906
TasI AATT 1 cut(s) 989
TatI WGTACW 2 cut(s) 849, 858
TauI GCSGC 5 cut(s) 251, 269, 366, 1018, 1155
TfiI GAWTC 4 cut(s) 114, 165, 472, 632
Tru1I TTAA 2 cut(s) 92, 672
Tru9I TTAA 2 cut(s) 92, 672
TscAI CASTG 9 cut(s) 28, 115, 130, 619, 692, 721, 826, 1030, 1087
TseFI GTSAC 4 cut(s) 323, 661, 683, 1082
Tsp45I GTSAC 4 cut(s) 323, 661, 683, 1082
TspDTI ATGAA 3 cut(s) 6, 17, 446
TspGWI ACGGA 4 cut(s) 160, 311, 882, 1155
TspRI CASTG 9 cut(s) 28, 115, 130, 619, 692, 721, 826, 1030, 1087
Tth111I GACNNNGTC 1 cut(s) 959
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 241
XceI RCATGY 4 cut(s) 1001, 1092, 1240, 1257
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.