Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007347

Physical Location & Seq

Genomic Coordinates Reverse (-)

13888594 .. 13890304

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAATTGGAGTACCTTGTCTCCAGCCGGCCAACTGCTGTCAATCTTTCGGATGCTGCAGCTAAACTAAAGCAGATTGCATCCGCGGTTGCCACTAATACTTCGGACGCAAGGAATGTGTTTGAGGCTTACATAGAAGCTTCTGAAATCATGCTCAAGGACGATGTCGCTTCAAACAAGGCTATTGGATCTCATGGAGCAAGTTTTATTGAGCACCTACTGGGAAACTCTAAGAACATTTCTATGTTGACCCATTGCAACACTGGCAGTCTTGCAACAGCTGGTTATGGTACTGCTCTTGGTGTCATCCGTTCACTTCATACTGAAGGAGTGTTAGAAAGGGCCTATTGTACAGAGACGCGTCCATTCAACCAAGGATCCAGACTCACAGCATTTGAGTTGGTGCATGATAACATACCCGCTACGCTTATAGCAGACTCGGCTGCAGCTGCATTAATGAAATTTGGGCGTGTCAATGCTGTAGTTGTTGGAGCAGATCGCGTGGCTGCAAATGGTGACACTGCAAACAAGATTGGGACCTACAATCTTGCCGTGAGTGCAAAGCACCATAACATTCCATTTTTTGTGGCTGCACCACTCACTTCCGTCGACTTATCTCTTTCTTCTGGAGAAGAGATAATAATAGAGGAAAGATCTCCAAAGGAATTGTTGAACACACACGGAGGACTCGGGGAACAAGTTGCTGCATCCGGAATCTCTGTCTGGAACCCAGCTTTCGATGTTACCCCTGCCAATTTAGTAACCGGTATCATAACCGAGAAGGGCGTTGTTACAAAAAAGGGCACTGACGCTTTCGACATAAAGGGTTTTGTTCAGAAGGAAGCCGTGCAGGCCAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005575 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0019509 GO:0019752 GO:0030054 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046523 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

IF-2B

Protein Analysis

288

Amino Acids

30.1

Weight (kDa)

5.91

Isoelectric Point (pI)

32.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	3 - 265	5e-74	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05830 AT2G05830 AT2G05830 AT2G05830
fragaria_vesca	FvH4_1g08940
malus_domestica	MD02G1094700.v1.1 MD15G1219600.v1.1
prunus_persica	Prupe.7G196300_v2.0.a1 Prupe.7G196300_v2.0.a1
pyrus_communis	pycom02g07490 pycom15g19470
rosa_chinensis	RchiOBHm_Chr2g0095391
rosa_laevigata	RLG00000016561
rosa_multiflora	Rmu_ssc0000183.1_g000040 Rmu_ssc0000183.1_g000041 Rmu_ssc0000183.1_g000042
rosa_roxburghii	Rroxscaffold_2G00146410
rosa_rugosa	Rorug02G0050400
rosa_samantha	Rh2AG098600 Rh2BG099800 Rh2CG101800 Rh2CG105700 Rh2DG099400
rosa_wichuraiana	Rw2G007440 Rw2G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AccII	CGCG	3 cut(s)	86, 361, 501
AccIII	TCCGGA	1 cut(s)	710
AciI	CCGC	3 cut(s)	84, 86, 420
AclWI	GGATC	3 cut(s)	196, 372, 385
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	3 cut(s)	14, 292, 352
AflIII	ACRYGT	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	3 cut(s)	174, 370, 673
AluBI	AGCT	5 cut(s)	62, 140, 281, 449, 734
AluI	AGCT	5 cut(s)	62, 140, 281, 449, 734
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	25, 350
AlwI	GGATC	3 cut(s)	196, 372, 385
Ama87I	CYCGRG	1 cut(s)	689
Aor13HI	TCCGGA	1 cut(s)	710
AoxI	GGCC	3 cut(s)	29, 342, 852
ApeKI	GCWGC	8 cut(s)	56, 59, 443, 446, 449, 506, 590, 704
ApoI	RAATTY	1 cut(s)	461
AseI	ATTAAT	1 cut(s)	455
AsiGI	ACCGGT	1 cut(s)	764
AspS9I	GGNCC	2 cut(s)	342, 537
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	806
BamHI	GGATCC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	8 cut(s)	43, 71, 430, 436, 458, 493, 577, 691
BceAI	ACGGC	2 cut(s)	536, 830
BcoDI	GTCTC	2 cut(s)	25, 350
BfmI	CTRYAG	3 cut(s)	57, 444, 480
BglI	GCCNNNNNGGC	1 cut(s)	851
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	8 cut(s)	57, 60, 444, 447, 450, 507, 591, 705
BlsI	GCNGC	8 cut(s)	58, 61, 445, 448, 451, 508, 592, 706
Bme18I	GGWCC	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	342, 537
BmiI	GGNNCC	3 cut(s)	379, 538, 728
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	3 cut(s)	43, 89, 716
BmuI	ACTGGG	1 cut(s)	230
BpmI	CTGGAG	2 cut(s)	7, 648
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	84, 373
BsaWI	WCCGGW	2 cut(s)	710, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse118I	RCCGGY	2 cut(s)	27, 764
Bse1I	ACTGG	3 cut(s)	225, 268, 855
Bse3DI	GCAATG	1 cut(s)	253
BseAI	TCCGGA	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	84, 373
BseGI	GGATG	4 cut(s)	58, 80, 306, 707
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	3 cut(s)	225, 268, 855
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	8 cut(s)	43, 71, 430, 436, 458, 493, 577, 691
BseYI	CCCAGC	1 cut(s)	730
BsgI	GTGCAG	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	86, 361, 501
BshFI	GGCC	3 cut(s)	31, 344, 854
BshTI	ACCGGT	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	28, 711, 765
BslFI	GGGAC	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	25, 350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	31, 344, 854
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	2 cut(s)	216, 806
Bsp13I	TCCGGA	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	188, 377, 496, 653
BspACI	CCGC	3 cut(s)	84, 86, 420
BspANI	GGCC	3 cut(s)	31, 344, 854
BspEI	TCCGGA	1 cut(s)	710
BspFNI	CGCG	3 cut(s)	86, 361, 501
BspLI	GGNNCC	3 cut(s)	379, 538, 728
BspMAI	CTGCAG	2 cut(s)	61, 448
BspPI	GGATC	3 cut(s)	196, 372, 385
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	27, 764
BsrGI	TGTACA	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	225, 268, 855
BssAI	RCCGGY	2 cut(s)	27, 764
BssECI	CCNNGG	2 cut(s)	84, 373
BssMI	GATC	4 cut(s)	188, 377, 496, 653
BssT1I	CCWWGG	1 cut(s)	373
Bst6I	CTCTTC	1 cut(s)	627
BstAUI	TGTACA	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	29, 852
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	58, 80, 306, 707
BstFNI	CGCG	3 cut(s)	86, 361, 501
BstKTI	GATC	4 cut(s)	191, 380, 499, 656
BstMAI	GTCTC	2 cut(s)	25, 350
BstMBI	GATC	4 cut(s)	188, 377, 496, 653
BstMWI	GCNNNNNNNGC	5 cut(s)	264, 440, 449, 557, 851
BstSFI	CTRYAG	3 cut(s)	57, 444, 480
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	3 cut(s)	86, 361, 501
BstV1I	GCAGC	8 cut(s)	43, 71, 430, 436, 458, 493, 577, 691
BstX2I	RGATCY	3 cut(s)	188, 377, 653
BstYI	RGATCY	3 cut(s)	188, 377, 653
BsuRI	GGCC	3 cut(s)	31, 344, 854
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	58, 80, 306, 707
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	261, 519, 804, 862
Cac8I	GCNNGC	2 cut(s)	29, 852
Cfr10I	RCCGGY	2 cut(s)	27, 764
Cfr13I	GGNCC	2 cut(s)	342, 537
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	4 cut(s)	116, 350, 367, 818
Csp6I	GTAC	3 cut(s)	13, 291, 351
CspAI	ACCGGT	1 cut(s)	764
CviAII	CATG	3 cut(s)	151, 194, 407
CviQI	GTAC	3 cut(s)	13, 291, 351
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	190, 379, 498, 655
DpnII	GATC	4 cut(s)	188, 377, 496, 653
EaeI	YGGCCR	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	2 cut(s)	342, 537
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	154, 197, 410
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	3 cut(s)	150, 193, 406
FauI	CCCGC	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	8 cut(s)	57, 60, 444, 447, 450, 507, 591, 705
FokI	GGATG	4 cut(s)	65, 67, 293, 694
Fsp4HI	GCNGC	8 cut(s)	57, 60, 444, 447, 450, 507, 591, 705
GluI	GCNGC	8 cut(s)	57, 60, 444, 447, 450, 507, 591, 705
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	2 cut(s)	7, 648
HaeIII	GGCC	3 cut(s)	31, 344, 854
HapII	CCGG	3 cut(s)	28, 711, 765
HgaI	GACGC	4 cut(s)	116, 350, 367, 818
Hin1II	CATG	3 cut(s)	154, 197, 410
HincII	GTYRAC	2 cut(s)	249, 610
HindII	GTYRAC	2 cut(s)	249, 610
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	4 cut(s)	384, 437, 687, 714
HpaII	CCGG	3 cut(s)	28, 711, 765
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	249, 314, 610
Hpy188I	TCNGA	4 cut(s)	52, 106, 145, 837
Hpy188III	TCNNGA	4 cut(s)	381, 627, 711, 724
Hpy8I	GTNNAC	3 cut(s)	249, 314, 610
Hpy99I	CGWCG	1 cut(s)	611
HpyAV	CCTTC	3 cut(s)	320, 775, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	264, 440, 449, 557, 851
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	154, 197, 410
Kpn2I	TCCGGA	1 cut(s)	710
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	188, 377, 496, 653
LmnI	GCTCC	2 cut(s)	197, 491
Lsp1109I	GCAGC	8 cut(s)	43, 71, 430, 436, 458, 493, 577, 691
LweI	GCATC	3 cut(s)	43, 89, 716
MaeIII	GTNAC	4 cut(s)	515, 742, 760, 790
MalI	GATC	4 cut(s)	190, 379, 498, 655
MboI	GATC	4 cut(s)	188, 377, 496, 653
MboII	GAAGA	2 cut(s)	615, 644
MflI	RGATCY	3 cut(s)	188, 377, 653
MhlI	GDGCHC	2 cut(s)	216, 806
MluCI	AATT	4 cut(s)	5, 461, 665, 754
MluI	ACGCGT	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	378, 431, 681
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	3 cut(s)	118, 640, 677
MroI	TCCGGA	1 cut(s)	710
MroNI	GCCGGC	1 cut(s)	27
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	3 cut(s)	86, 281, 449
MspI	CCGG	3 cut(s)	28, 711, 765
MvnI	CGCG	3 cut(s)	86, 361, 501
MwoI	GCNNNNNNNGC	5 cut(s)	264, 440, 449, 557, 851
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	4 cut(s)	188, 377, 496, 653
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	3 cut(s)	154, 197, 410
NlaIV	GGNNCC	3 cut(s)	379, 538, 728
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	714
PflFI	GACNNNGTC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	764
PkrI	GCNGC	8 cut(s)	58, 61, 445, 448, 451, 508, 592, 706
PleI	GAGTC	3 cut(s)	378, 431, 681
PpsI	GAGTC	3 cut(s)	378, 431, 681
PpuMI	RGGWCCY	1 cut(s)	537
PshBI	ATTAAT	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	730
PspN4I	GGNNCC	3 cut(s)	379, 538, 728
PspPI	GGNCC	2 cut(s)	342, 537
PspPPI	RGGWCCY	1 cut(s)	537
PstI	CTGCAG	2 cut(s)	61, 448
PsuI	RGATCY	3 cut(s)	188, 377, 653
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	2 cut(s)	281, 449
RsaI	GTAC	3 cut(s)	14, 292, 352
RsaNI	GTAC	3 cut(s)	13, 291, 351
RseI	CAYNNNNRTG	1 cut(s)	242
SacII	CCGCGG	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	8 cut(s)	57, 60, 444, 447, 450, 507, 591, 705
Sau3AI	GATC	4 cut(s)	188, 377, 496, 653
Sau96I	GGNCC	2 cut(s)	342, 537
SchI	GAGTC	3 cut(s)	378, 431, 681
SduI	GDGCHC	2 cut(s)	216, 806
SetI	ASST	8 cut(s)	18, 64, 142, 219, 283, 451, 542, 736
SfaNI	GCATC	3 cut(s)	43, 89, 716
SfcI	CTRYAG	3 cut(s)	57, 444, 480
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	5, 461, 665, 754
SsiI	CCGC	3 cut(s)	84, 86, 420
StyI	CCWWGG	1 cut(s)	373
TaqI	TCGA	3 cut(s)	609, 738, 816
TasI	AATT	4 cut(s)	5, 461, 665, 754
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	1 cut(s)	714
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	4 cut(s)	268, 526, 811, 862
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	8 cut(s)	56, 59, 443, 446, 449, 506, 590, 704
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	3 cut(s)	17, 308, 473
TspGWI	ACGGA	3 cut(s)	299, 595, 696
TspRI	CASTG	4 cut(s)	268, 526, 811, 862
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	537
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.