pycom15g19560

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010874
Physical Location & Seq
Reverse (-)
13950371 .. 13951319
949 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
ATGTTGAAGTTTGGCAAGAGACCTCTCCCGATGGTCGGAAAGATATCGGAACTCCTAGTTTCCGGCAGCAGTGCCGGGTTTTCCGACACGGACACAAGCCCTAGAGGTCCACTGGACCTCAAGATACAACCTACTTCAAGTCCTAGAGGCGTAAAGAGATATGACGTTGGTGGTGTTGGGTTGGGAATACTAGCTGCCCTGGAAAAATCAACCCATAACGGACGTGAAATATTGGCAAAATACGCTGTGTTCTGTCCGAACACGAACCGGTCCGACCCGATTCCGGTGAATTCGGGTCAAAACTGTGATGGGTTTTCATCAGGAGGTGTCCAAGAATTTGAGGAAGATAGTTCAGAGAATTATACTTACGTGACTCTACGTGGACAAAAAAAGTCATGCACAAAGGTGTACTACGACGGTGGTGACTGCGCGGGAAGTGCCATGCACCGCCGTGCCAGTAGCTGTGGTTTGACTATATGTGCTGATGATCTTGAAAGTTCGGTTTTTCCTACATCGGATTTCCTCAGTTGCTGCCATTTGTGCAAGAAAAACCTCCATGGCAAGGACATATACATGTACAGAGGAGAAAAGGCATTTTGTAGCACAGAATGTCGGTCAACCCAGATAGTTGCCGATGAGAGGAAAGAGCAGTGCAGATTAGAAGCCTTGAGATCTGCGGATGTTTCGAGCTCGTCTTGTTCCAAAGATGAGATCTTCTCTACTGGGATTCTTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

247

Amino Acids

26.61

Weight (kDa)

6.87

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 167 - 215 6.5e-23 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010874)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19200 AT1G19200 AT1G74940 AT5G20700
fragaria_vesca FvH4_1g09090
malus_domestica MD02G1096300.v1.1 MD15G1220800.v1.1
prunus_persica Prupe.7G194600_v2.0.a1
pyrus_communis pycom02g07610 pycom15g19560
rosa_chinensis RchiOBHm_Chr2g0095501
rosa_laevigata RLG00000016573
rosa_multiflora Rmu_sc0006076.1_g000006
rosa_roxburghii Rroxscaffold_2G00146250
rosa_rugosa Rorug02G0051700
rosa_samantha Rh2AG099700 Rh2BG101000 Rh2CG103200 Rh2DG100600
rosa_wichuraiana Rw2G007560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AciI CCGC 3 cut(s) 431, 448, 677
AcsI RAATTY 2 cut(s) 289, 335
AfaI GTAC 2 cut(s) 410, 578
AfiI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
AflIII ACRYGT 1 cut(s) 573
AgeI ACCGGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 7, 138, 494
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 198
AleI CACNNNNGTG 2 cut(s) 404, 450
AluBI AGCT 3 cut(s) 194, 462, 690
AluI AGCT 3 cut(s) 194, 462, 690
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 2 cut(s) 462, 531
ApeKI GCWGC 3 cut(s) 66, 194, 531
ApoI RAATTY 2 cut(s) 289, 335
AsiGI ACCGGT 1 cut(s) 267
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 3 cut(s) 107, 115, 270
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 298, 434
AvaII GGWCC 3 cut(s) 107, 115, 270
BanII GRGCYC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 3 cut(s) 78, 181, 518
BccI CCATC 2 cut(s) 25, 302
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 4 cut(s) 56, 102, 144, 191
BglII AGATCT 2 cut(s) 671, 711
BisI GCNGC 3 cut(s) 67, 195, 532
BlsI GCNGC 3 cut(s) 68, 196, 533
Bme1390I CCNGG 2 cut(s) 76, 200
Bme18I GGWCC 3 cut(s) 107, 115, 270
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 107, 115, 270
BmrFI CCNGG 2 cut(s) 76, 200
BmrI ACTGGG 1 cut(s) 732
BmuI ACTGGG 1 cut(s) 732
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpuEI CTTGAG 2 cut(s) 104, 688
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 370, 380
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 198, 556
BsaWI WCCGGW 2 cut(s) 267, 283
Bsc4I CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
Bse118I RCCGGY 1 cut(s) 267
Bse1I ACTGG 3 cut(s) 117, 456, 727
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 198, 556
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
BseMII CTCAG 1 cut(s) 538
BseNI ACTGG 3 cut(s) 117, 456, 727
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 3 cut(s) 78, 181, 518
BsgI GTGCAG 1 cut(s) 673
Bsh1236I CGCG 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 4 cut(s) 63, 75, 268, 284
BslI CCNNNNNNNGG 4 cut(s) 35, 283, 562, 639
BsmAI GTCTC 1 cut(s) 13
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 692
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 3 cut(s) 487, 671, 711
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 3 cut(s) 431, 448, 677
BspCNI CTCAG 1 cut(s) 537
BspFNI CGCG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 117, 456, 727
BssAI RCCGGY 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 198, 556
BssMI GATC 3 cut(s) 487, 671, 711
BssT1I CCWWGG 1 cut(s) 556
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 305, 419
BstAUI TGTACA 1 cut(s) 576
BstBAI YACGTR 2 cut(s) 370, 380
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 3 cut(s) 490, 674, 714
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 3 cut(s) 487, 671, 711
BstMWI GCNNNNNNNGC 3 cut(s) 242, 437, 540
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 2 cut(s) 74, 198
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 78, 181, 518
BstX2I RGATCY 2 cut(s) 671, 711
BstYI RGATCY 2 cut(s) 671, 711
BtgI CCRYGG 1 cut(s) 556
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 685
BtsI GCAGTG 2 cut(s) 76, 656
BtsIMutI CAGTG 3 cut(s) 76, 110, 656
CaiI CAGNNNCTG 2 cut(s) 462, 531
CfoI GCGC 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 267
Cfr13I GGNCC 3 cut(s) 107, 115, 270
CpoI CGGWCCG 1 cut(s) 270
Csp6I GTAC 2 cut(s) 409, 577
CspAI ACCGGT 1 cut(s) 267
CspI CGGWCCG 1 cut(s) 270
CviAII CATG 4 cut(s) 396, 442, 557, 574
CviJI RGCY 5 cut(s) 99, 194, 462, 665, 690
CviKI_1 RGCY 5 cut(s) 99, 194, 462, 665, 690
CviQI GTAC 2 cut(s) 409, 577
DdeI CTNAG 1 cut(s) 524
DpnI GATC 3 cut(s) 489, 673, 713
DpnII GATC 3 cut(s) 487, 671, 711
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 45
Eco47I GGWCC 3 cut(s) 107, 115, 270
Eco53kI GAGCTC 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 4 cut(s) 399, 445, 560, 577
FatI CATG 4 cut(s) 395, 441, 556, 573
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 67, 195, 532
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 3 cut(s) 67, 195, 532
FspBI CTAG 4 cut(s) 56, 102, 144, 191
GlaI GCGC 1 cut(s) 430
GluI GCNGC 3 cut(s) 67, 195, 532
HapII CCGG 4 cut(s) 63, 75, 268, 284
HhaI GCGC 1 cut(s) 431
Hin1II CATG 4 cut(s) 399, 445, 560, 577
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 3 cut(s) 280, 373, 727
HpaII CCGG 4 cut(s) 63, 75, 268, 284
HphI GGTGA 2 cut(s) 298, 434
Hpy166II GTNNAC 4 cut(s) 110, 383, 409, 618
Hpy188I TCNGA 7 cut(s) 38, 49, 85, 258, 274, 355, 517
Hpy188III TCNNGA 4 cut(s) 28, 121, 321, 491
Hpy8I GTNNAC 4 cut(s) 110, 383, 409, 618
Hpy99I CGWCG 1 cut(s) 419
HpyCH4III ACNGT 2 cut(s) 305, 419
HpyCH4IV ACGT 4 cut(s) 165, 223, 369, 379
HpyCH4V TGCA 4 cut(s) 399, 445, 543, 654
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 437, 540
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 4 cut(s) 165, 223, 369, 379
Hsp92II CATG 4 cut(s) 399, 445, 560, 577
HspAI GCGC 1 cut(s) 429
Kzo9I GATC 3 cut(s) 487, 671, 711
Lsp1109I GCAGC 3 cut(s) 78, 181, 518
MaeI CTAG 4 cut(s) 56, 102, 144, 191
MaeII ACGT 4 cut(s) 165, 223, 369, 379
MaeIII GTNAC 2 cut(s) 370, 422
MalI GATC 3 cut(s) 489, 673, 713
MboI GATC 3 cut(s) 487, 671, 711
MboII GAAGA 2 cut(s) 356, 706
MflI RGATCY 2 cut(s) 671, 711
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 289, 335, 358
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 3 cut(s) 16, 108, 297
MseI TTAA 1 cut(s) 739
MslI CAYNNNNRTG 3 cut(s) 404, 450, 572
MspI CCGG 4 cut(s) 63, 75, 268, 284
MspR9I CCNGG 2 cut(s) 76, 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 242, 437, 540
NciI CCSGG 1 cut(s) 76
NcoI CCATGG 1 cut(s) 556
NdeII GATC 3 cut(s) 487, 671, 711
NlaIII CATG 4 cut(s) 399, 445, 560, 577
NmuCI GTSAC 2 cut(s) 370, 422
NspI RCATGY 1 cut(s) 577
OliI CACNNNNGTG 2 cut(s) 404, 450
PciI ACATGT 1 cut(s) 573
PfeI GAWTC 2 cut(s) 280, 727
PinAI ACCGGT 1 cut(s) 267
PkrI GCNGC 3 cut(s) 68, 196, 533
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 2 cut(s) 370, 380
PscI ACATGT 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 3 cut(s) 107, 115, 270
PstNI CAGNNNCTG 2 cut(s) 462, 531
PsuI RGATCY 2 cut(s) 671, 711
RsaI GTAC 2 cut(s) 410, 578
RsaNI GTAC 2 cut(s) 409, 577
RseI CAYNNNNRTG 3 cut(s) 404, 450, 572
Rsr2I CGGWCCG 1 cut(s) 270
RsrII CGGWCCG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 739
SatI GCNGC 3 cut(s) 67, 195, 532
Sau3AI GATC 3 cut(s) 487, 671, 711
Sau96I GGNCC 3 cut(s) 107, 115, 270
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 2 cut(s) 76, 200
SduI GDGCHC 1 cut(s) 692
SinI GGWCC 3 cut(s) 107, 115, 270
SmiMI CAYNNNNRTG 3 cut(s) 404, 450, 572
SmlI CTYRAG 2 cut(s) 119, 667
SmoI CTYRAG 2 cut(s) 119, 667
Sse9I AATT 3 cut(s) 289, 335, 358
SsiI CCGC 3 cut(s) 431, 448, 677
SspI AATATT 1 cut(s) 231
SspMI CTAG 4 cut(s) 56, 102, 144, 191
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 2 cut(s) 74, 198
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 305, 419
TaiI ACGT 4 cut(s) 168, 226, 372, 382
TaqI TCGA 1 cut(s) 686
TaqII GACCGA 1 cut(s) 603
TasI AATT 3 cut(s) 289, 335, 358
TatI WGTACW 2 cut(s) 408, 576
TfiI GAWTC 2 cut(s) 280, 727
Tru1I TTAA 1 cut(s) 739
Tru9I TTAA 1 cut(s) 739
TscAI CASTG 3 cut(s) 76, 117, 656
TseFI GTSAC 2 cut(s) 370, 422
TseI GCWGC 3 cut(s) 66, 194, 531
Tsp45I GTSAC 2 cut(s) 370, 422
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 2 cut(s) 104, 234
TspRI CASTG 3 cut(s) 76, 117, 656
VpaK11BI GGWCC 3 cut(s) 107, 115, 270
XapI RAATTY 2 cut(s) 289, 335
XceI RCATGY 1 cut(s) 577
XspI CTAG 4 cut(s) 56, 102, 144, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.