pycom15g21120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014553
Physical Location & Seq
Forward (+)
15119053 .. 15119747
695 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGAAGATGAAGCAAATAGAGCAGGGGAGTTCACTGCTGCCGCCACCTCCACCACCTCCACTTCCAAGGTTCTGGGCTAATAAGGCTGTTACGGAGAGCGTGACAAAGCGAGAAATTGCGAGGTTCTGGTATCGGAAGCGTATTGAGGAAGAGGAGCATCTCCTCGCCGCTATCAAGGCTGCAGCACATATTCGAGCCCGCAAGCTCTCGGAGGAAGATTACAGACGCTTCGAGGAGTCCTTAAACGACGATGACAAAGATGAGAACGACAGATCTTCTGCTACTAATGACAGTAACAACGAAATTCGTGTTGGAATCAAGGACTGGTGGACGAAAAGCAAGTACGCATACTTGAACCAACCCGCCGTGGCGTCCTCCGTGGATCCCCCGAAAAGGCGGACGTCCACATTTGTTCCGAATTGTTTCGCTTATAAGCCGGCGCCGCTCTACCCTACTTCTCTTGGTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

9.16

Isoelectric Point (pI)

71.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17710
fragaria_vesca FvH4_1g11080
malus_domestica MD15G1237400.v1.1
prunus_persica Prupe.7G175000_v2.0.a1
pyrus_communis pycom02g09630 pycom15g21120
rosa_chinensis RchiOBHm_Chr2g0098351
rosa_laevigata RLG00000016793
rosa_multiflora Rmu_sc0003434.1_g000001
rosa_roxburghii Rroxscaffold_2G00101560
rosa_rugosa Rorug02G0072300 Rorug02G0072400
rosa_samantha Rh2AG119400 Rh2BG122600 Rh2CG124200 Rh2DG124300
rosa_wichuraiana Rw2G009360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AatII GACGTC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 439
AccBSI CCGCTC 1 cut(s) 445
AciI CCGC 6 cut(s) 41, 168, 199, 363, 397, 443
AclWI GGATC 2 cut(s) 377, 390
AcsI RAATTY 1 cut(s) 303
AcyI GRCGYC 3 cut(s) 371, 401, 440
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
AlwI GGATC 2 cut(s) 377, 390
ApeKI GCWGC 3 cut(s) 37, 179, 182
ApoI RAATTY 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 442
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 24, 166, 194
BceAI ACGGC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 443
BglII AGATCT 1 cut(s) 272
BisI GCNGC 6 cut(s) 38, 41, 168, 180, 183, 443
BlsI GCNGC 6 cut(s) 39, 42, 169, 181, 184, 444
BmiI GGNNCC 2 cut(s) 384, 441
BmsI GCATC 1 cut(s) 166
BsaHI GRCGYC 3 cut(s) 371, 401, 440
BsaJI CCNNGG 3 cut(s) 65, 366, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 329
BseDI CCNNGG 3 cut(s) 65, 366, 378
BseLI CCNNNNNNNGG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 3 cut(s) 152, 167, 248
BseXI GCAGC 3 cut(s) 24, 166, 194
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 272, 382
BspACI CCGC 6 cut(s) 41, 168, 199, 363, 397, 443
BspLI GGNNCC 2 cut(s) 384, 441
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 2 cut(s) 377, 390
BspT107I GGYRCC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 65, 366, 378
BssMI GATC 2 cut(s) 272, 382
BssNI GRCGYC 3 cut(s) 371, 401, 440
BssT1I CCWWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 3 cut(s) 371, 401, 440
BstC8I GCNNGC 3 cut(s) 199, 203, 438
BstDSI CCRYGG 2 cut(s) 366, 378
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 2 cut(s) 275, 385
BstMBI GATC 2 cut(s) 272, 382
BstMWI GCNNNNNNNGC 4 cut(s) 19, 83, 176, 442
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 3 cut(s) 24, 166, 194
BstX2I RGATCY 2 cut(s) 272, 382
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 2 cut(s) 272, 382
BtgI CCRYGG 2 cut(s) 366, 378
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 3 cut(s) 199, 203, 438
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 436
CseI GACGC 2 cut(s) 234, 360
Csp6I GTAC 1 cut(s) 343
CviJI RGCY 6 cut(s) 77, 86, 179, 197, 205, 436
CviKI_1 RGCY 6 cut(s) 77, 86, 179, 197, 205, 436
CviQI GTAC 1 cut(s) 343
DinI GGCGCC 1 cut(s) 441
DpnI GATC 2 cut(s) 274, 384
DpnII GATC 2 cut(s) 272, 382
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 199
EgeI GGCGCC 1 cut(s) 441
EheI GGCGCC 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 65
FaiI YATR 3 cut(s) 189, 349, 432
FauI CCCGC 2 cut(s) 206, 370
Fnu4HI GCNGC 6 cut(s) 38, 41, 168, 180, 183, 443
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 6 cut(s) 38, 41, 168, 180, 183, 443
GlaI GCGC 1 cut(s) 441
GluI GCNGC 6 cut(s) 38, 41, 168, 180, 183, 443
HaeII RGCGCY 1 cut(s) 443
HapII CCGG 1 cut(s) 437
HgaI GACGC 2 cut(s) 234, 360
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 3 cut(s) 371, 401, 440
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HinfI GANTC 2 cut(s) 236, 315
HpaII CCGG 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 32, 330, 405
Hpy188I TCNGA 3 cut(s) 135, 211, 417
Hpy8I GTNNAC 3 cut(s) 32, 330, 405
Hpy99I CGWCG 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 83, 176, 442
HpySE526I ACGT 1 cut(s) 401
Hsp92I GRCGYC 3 cut(s) 371, 401, 440
HspAI GCGC 1 cut(s) 440
KasI GGCGCC 1 cut(s) 439
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Kzo9I GATC 2 cut(s) 272, 382
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 8, 58, 112, 310, 450
Lsp1109I GCAGC 3 cut(s) 24, 166, 194
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 3 cut(s) 88, 100, 293
MalI GATC 2 cut(s) 274, 384
MbiI CCGCTC 1 cut(s) 445
MboI GATC 2 cut(s) 272, 382
MboII GAAGA 4 cut(s) 16, 161, 227, 267
MflI RGATCY 2 cut(s) 272, 382
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 3 cut(s) 114, 303, 418
Mly113I GGCGCC 1 cut(s) 440
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 9 cut(s) 57, 66, 114, 139, 145, 173, 205, 226, 385
MroNI GCCGGC 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 1 cut(s) 242
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 4 cut(s) 19, 83, 176, 442
NaeI GCCGGC 1 cut(s) 438
NarI GGCGCC 1 cut(s) 440
NdeII GATC 2 cut(s) 272, 382
NgoMIV GCCGGC 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 384, 441
NmuCI GTSAC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 438
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 6 cut(s) 39, 42, 169, 181, 184, 444
PleI GAGTC 1 cut(s) 244
PluTI GGCGCC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 244
PsiI TTATAA 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 384, 441
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 2 cut(s) 272, 382
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 6 cut(s) 38, 41, 168, 180, 183, 443
Sau3AI GATC 2 cut(s) 272, 382
SchI GAGTC 1 cut(s) 245
SduI GDGCHC 1 cut(s) 199
SetI ASST 6 cut(s) 49, 58, 71, 125, 207, 404
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 441
Sse9I AATT 3 cut(s) 114, 303, 418
SsiI CCGC 6 cut(s) 41, 168, 199, 363, 397, 443
SspDI GGCGCC 1 cut(s) 439
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 404
TaqI TCGA 2 cut(s) 193, 231
TasI AATT 3 cut(s) 114, 303, 418
TauI GCSGC 3 cut(s) 43, 170, 445
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 3 cut(s) 37, 179, 182
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 2 cut(s) 107, 367
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 422
ZraI GACGTC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.