Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

16630786 .. 16633753

Gene Structure 2968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGCTAGTTCTGCATATGTCCGCAACTCTTCCCAGAGAAAACCCCCTCACCCACTACCGCCACTCTAAATTCCTCGCAACCCAAAACCACCACACCTCTCTCTTCCCCCATTTCTCTATAAACCCACAATTCCAGCCAATATATCGAAGAAATTGGACCCCAAAACTTGTGTATGCAGCCACAAATCACCGGCTCGGGATCACCGAACAAGAACAAGCCCAGGAAGAAGAAGAACAAGATGCAGAGGAGGAGGAGGAAGAAGAAGATTACGATTACTCGGGGGACGAGTCGTCGTTACTGTCTCTGAGTGAGAAGCCAGACAGAAACATGGCTTTGCTGGATGAGTACGAGATGGAGGAGCTCGAAGATGCCGCTGACCCGAATCATCGGAGCGGGTACGTGGCTGTGCTGGGGAAGCCGAATGTGGGAAAGAGTACGCTCTCGAATCAAATGGTTGGTCAGAAGTTGTCCATTGTTACTGATAAACCTCAGACTACCCGGCATCGAATTCTCGGTATATGTTCTGGCACAGACTATCAGATGATACTTTATGACACACCGGGTGTTATGGAGAAGAGAATGCACAAGTTGGATTCTATGATGATGAAGAATGTTCGCAGTGCTGCGGTTAATGCGGATTGTGTTGTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAAAATTGATGAAGTGCTGGAAGAAGGAGTGGGTAACCAGACTGAAAGCTTGCCACCCATTTTGTTGGTTATGAATAAGAAGGATTTGATTAAACCTGGTGAAATTGCAAAGAAACTGGAGTGGTATGAGAAATTTACAAATGTTGATGAGGTCATACCTGTGAGTGCCAAACTTGGACAGGGAGTGGAAGACGTCAAGCAATGGATTTTATCAAAACTTCCTTTTGGGCCAGCATATTATCCGAAGGACATTGTCAGTGAGCACCCAGAAAGATTCTTTGTATCTGAAATTGTTCGAGAAAAATCGATCTTTATGCAGTACCGCAAAGAGATTCCTTATTCATGTCAGGTGAATGTCGTGAGCTACAAAACTAGGCCAACGGCAAAAGACTTTATACAAGTGGAAATTGTCGTTGAAAAAAACTCACAGAAGATCATTGTTATTGGAAAAGAAGGGAGAGCTCTGAAACTACTTGCAACAGCTGCGCGGCTCGACATAGAAAATTTCTTGCAGAAGAAAGTCTTCCTAGAGGTTGTAGTGAAGGTTAAAGAGAATTGGCGGCAAGACGAAGTGCTTTTGAAGAATTATGGCTATGGGGGTCAAATTCAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

433

Amino Acids

49.49

Weight (kDa)

5.41

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	135 - 253	2.6e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	135 - 294	1.8e-11	Ferrous iron transport protein B
KH_2	PF07650	337 - 414	2.4e-16	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	876
AccBSI	CCGCTC	1 cut(s)	396
AccII	CGCG	1 cut(s)	1168
AciI	CCGC	9 cut(s)	24, 61, 375, 396, 629, 638, 1003, 1168, 1240
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	5 cut(s)	71, 510, 812, 1183, 1284
AcyI	GRCGYC	1 cut(s)	873
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	4 cut(s)	350, 401, 439, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	1097, 1261, 1289
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	222, 775
AluBI	AGCT	6 cut(s)	7, 364, 729, 1044, 1142, 1163
AluI	AGCT	6 cut(s)	7, 364, 729, 1044, 1142, 1163
Alw21I	GWGCWC	3 cut(s)	366, 945, 1144
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	209
Ama87I	CYCGRG	2 cut(s)	197, 280
AoxI	GGCC	2 cut(s)	908, 1055
ApeKI	GCWGC	3 cut(s)	179, 626, 1163
ApoI	RAATTY	5 cut(s)	71, 510, 812, 1183, 1284
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp700I	GAANNNNTTC	2 cut(s)	972, 1202
AspLEI	GCGC	1 cut(s)	1168
AspS9I	GGNCC	2 cut(s)	159, 908
AsuC2I	CCSGG	2 cut(s)	502, 564
AsuHPI	GGTGA	5 cut(s)	43, 182, 196, 791, 1042
AvaI	CYCGRG	2 cut(s)	197, 280
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	366, 1144
BbsI	GAAGAC	2 cut(s)	876, 1195
Bbv12I	GWGCWC	3 cut(s)	366, 945, 1144
BbvI	GCAGC	3 cut(s)	191, 613, 1150
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	1077
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BciT130I	CCWGG	2 cut(s)	224, 777
BcnI	CCSGG	2 cut(s)	502, 564
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	3 cut(s)	8, 1053, 1208
BisI	GCNGC	6 cut(s)	180, 375, 627, 1164, 1169, 1241
BlsI	GCNGC	6 cut(s)	181, 376, 628, 1165, 1170, 1242
Bme1390I	CCNGG	4 cut(s)	224, 502, 564, 777
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	2 cut(s)	197, 280
BmgT120I	GGNCC	2 cut(s)	159, 908
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	4 cut(s)	224, 502, 564, 777
BmsI	GCATC	4 cut(s)	232, 361, 514, 652
BpiI	GAAGAC	2 cut(s)	876, 1195
BpmI	CTGGAG	1 cut(s)	818
BpuMI	CCSGG	2 cut(s)	502, 564
Bsa29I	ATCGAT	1 cut(s)	986
BsaAI	YACGTR	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	873
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	801
Bse3DI	GCAATG	1 cut(s)	887
BseBI	CCWGG	2 cut(s)	224, 777
BseCI	ATCGAT	1 cut(s)	986
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	887
BseMII	CTCAG	2 cut(s)	299, 506
BseNI	ACTGG	1 cut(s)	801
BseRI	GAGGAG	4 cut(s)	263, 266, 269, 374
BseXI	GCAGC	3 cut(s)	191, 613, 1150
BseYI	CCCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	1168
BshFI	GGCC	2 cut(s)	910, 1057
BshVI	ATCGAT	1 cut(s)	986
BsiHKAI	GWGCWC	3 cut(s)	366, 945, 1144
BsiHKCI	CYCGRG	2 cut(s)	197, 280
BsiSI	CCGG	3 cut(s)	193, 502, 563
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	910, 1057
BsoBI	CYCGRG	2 cut(s)	197, 280
Bsp1286I	GDGCHC	3 cut(s)	366, 945, 1144
Bsp143I	GATC	3 cut(s)	201, 987, 1113
BspACI	CCGC	9 cut(s)	24, 61, 375, 396, 629, 638, 1003, 1168, 1240
BspANI	GGCC	2 cut(s)	910, 1057
BspCNI	CTCAG	2 cut(s)	300, 505
BspDI	ATCGAT	1 cut(s)	986
BspFNI	CGCG	1 cut(s)	1168
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	801
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	201, 987, 1113
BssNI	GRCGYC	1 cut(s)	873
Bst2UI	CCWGG	2 cut(s)	224, 777
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	3 cut(s)	36, 110, 572
BstACI	GRCGYC	1 cut(s)	873
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	731, 912
BstDEI	CTNAG	2 cut(s)	308, 492
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	1168
BstHHI	GCGC	1 cut(s)	1168
BstKTI	GATC	3 cut(s)	204, 990, 1116
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	3 cut(s)	201, 987, 1113
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 418, 635, 1163
BstNI	CCWGG	2 cut(s)	224, 777
BstNSI	RCATGY	1 cut(s)	669
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	4 cut(s)	222, 500, 562, 775
BstUI	CGCG	1 cut(s)	1168
BstV1I	GCAGC	3 cut(s)	191, 613, 1150
BstV2I	GAAGAC	2 cut(s)	876, 1195
BstXI	CCANNNNNNTGG	1 cut(s)	745
Bsu15I	ATCGAT	1 cut(s)	986
BsuRI	GGCC	2 cut(s)	910, 1057
BsuTUI	ATCGAT	1 cut(s)	986
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	628, 943
Cac8I	GCNNGC	2 cut(s)	731, 912
CfoI	GCGC	1 cut(s)	1168
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	159, 908
ClaI	ATCGAT	1 cut(s)	986
CsiI	ACCWGGT	1 cut(s)	775
Csp6I	GTAC	4 cut(s)	349, 400, 438, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	3 cut(s)	331, 666, 1023
CviQI	GTAC	4 cut(s)	349, 400, 438, 1000
DdeI	CTNAG	2 cut(s)	308, 492
DpnI	GATC	3 cut(s)	203, 989, 1115
DpnII	GATC	3 cut(s)	201, 987, 1113
DraIII	CACNNNGTG	1 cut(s)	566
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	3 cut(s)	36, 110, 572
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	3 cut(s)	36, 110, 572
Ecl136II	GAGCTC	2 cut(s)	364, 1142
Eco24I	GRGCYC	2 cut(s)	366, 1144
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	2 cut(s)	364, 1142
Eco88I	CYCGRG	2 cut(s)	197, 280
Eco91I	GGTNACC	1 cut(s)	713
EcoICRI	GAGCTC	2 cut(s)	364, 1142
EcoO65I	GGTNACC	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	222, 775
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	2 cut(s)	366, 1144
FaeI	CATG	3 cut(s)	334, 669, 1026
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	330, 665, 1022
FauI	CCCGC	1 cut(s)	389
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	6 cut(s)	180, 375, 627, 1164, 1169, 1241
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	2 cut(s)	366, 1144
Fsp4HI	GCNGC	6 cut(s)	180, 375, 627, 1164, 1169, 1241
FspBI	CTAG	3 cut(s)	8, 1053, 1208
GlaI	GCGC	1 cut(s)	1167
GluI	GCNGC	6 cut(s)	180, 375, 627, 1164, 1169, 1241
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	818
HaeIII	GGCC	2 cut(s)	910, 1057
HapII	CCGG	3 cut(s)	193, 502, 563
HhaI	GCGC	1 cut(s)	1168
Hin1I	GRCGYC	1 cut(s)	873
Hin1II	CATG	3 cut(s)	334, 669, 1026
Hin6I	GCGC	1 cut(s)	1166
HinP1I	GCGC	1 cut(s)	1166
HindIII	AAGCTT	1 cut(s)	727
HinfI	GANTC	6 cut(s)	290, 385, 448, 596, 954, 1012
HpaII	CCGG	3 cut(s)	193, 502, 563
HphI	GGTGA	5 cut(s)	43, 182, 196, 791, 1042
Hpy188I	TCNGA	8 cut(s)	309, 393, 465, 495, 543, 924, 967, 1146
Hpy188III	TCNNGA	4 cut(s)	199, 445, 977, 1039
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	5 cut(s)	698, 754, 919, 1127, 1216
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	2 cut(s)	402, 873
HpyCH4V	TGCA	9 cut(s)	16, 179, 245, 586, 665, 788, 997, 1157, 1192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 418, 635, 1163
HpyF3I	CTNAG	2 cut(s)	308, 492
HpySE526I	ACGT	2 cut(s)	402, 873
Hsp92I	GRCGYC	1 cut(s)	873
Hsp92II	CATG	3 cut(s)	334, 669, 1026
HspAI	GCGC	1 cut(s)	1166
Kzo9I	GATC	3 cut(s)	201, 987, 1113
LmnI	GCTCC	3 cut(s)	4, 361, 393
Lsp1109I	GCAGC	3 cut(s)	191, 613, 1150
LweI	GCATC	4 cut(s)	232, 361, 514, 652
MabI	ACCWGGT	1 cut(s)	775
MaeI	CTAG	3 cut(s)	8, 1053, 1208
MaeII	ACGT	2 cut(s)	402, 873
MaeIII	GTNAC	3 cut(s)	297, 478, 713
MalI	GATC	3 cut(s)	203, 989, 1115
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	3 cut(s)	201, 987, 1113
MhlI	GDGCHC	3 cut(s)	366, 945, 1144
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	667
MroXI	GAANNNNTTC	2 cut(s)	972, 1202
MseI	TTAA	3 cut(s)	633, 771, 1227
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	377, 1163
MspI	CCGG	3 cut(s)	193, 502, 563
MspR9I	CCNGG	4 cut(s)	224, 502, 564, 777
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	2 cut(s)	224, 777
MvnI	CGCG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	4 cut(s)	13, 418, 635, 1163
NciI	CCSGG	2 cut(s)	502, 564
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	3 cut(s)	201, 987, 1113
NlaIII	CATG	3 cut(s)	334, 669, 1026
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	972, 1202
PfeI	GAWTC	5 cut(s)	385, 448, 596, 954, 1012
PflFI	GACNNNGTC	1 cut(s)	932
PkrI	GCNGC	6 cut(s)	181, 376, 628, 1165, 1170, 1242
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	403
Psp124BI	GAGCTC	2 cut(s)	366, 1144
Psp6I	CCWGG	2 cut(s)	222, 775
PspEI	GGTNACC	1 cut(s)	713
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	222, 775
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	159, 908
PsyI	GACNNNGTC	1 cut(s)	932
PvuII	CAGCTG	1 cut(s)	1163
RsaI	GTAC	4 cut(s)	350, 401, 439, 1001
RsaNI	GTAC	4 cut(s)	349, 400, 438, 1000
RseI	CAYNNNNRTG	1 cut(s)	839
SacI	GAGCTC	2 cut(s)	366, 1144
SaqAI	TTAA	3 cut(s)	633, 771, 1227
SatI	GCNGC	6 cut(s)	180, 375, 627, 1164, 1169, 1241
Sau3AI	GATC	3 cut(s)	201, 987, 1113
Sau96I	GGNCC	2 cut(s)	159, 908
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	4 cut(s)	224, 502, 564, 777
SduI	GDGCHC	3 cut(s)	366, 945, 1144
SexAI	ACCWGGT	1 cut(s)	775
SfaNI	GCATC	4 cut(s)	232, 361, 514, 652
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	839
SsiI	CCGC	9 cut(s)	24, 61, 375, 396, 629, 638, 1003, 1168, 1240
SspMI	CTAG	3 cut(s)	8, 1053, 1208
SstI	GAGCTC	2 cut(s)	366, 1144
StyD4I	CCNGG	4 cut(s)	222, 500, 562, 775
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	2 cut(s)	405, 876
TaqI	TCGA	7 cut(s)	148, 366, 446, 508, 976, 986, 1173
TauI	GCSGC	3 cut(s)	377, 1171, 1243
TfiI	GAWTC	5 cut(s)	385, 448, 596, 954, 1012
Tru1I	TTAA	3 cut(s)	633, 771, 1227
Tru9I	TTAA	3 cut(s)	633, 771, 1227
TscAI	CASTG	2 cut(s)	628, 943
TseI	GCWGC	3 cut(s)	179, 626, 1163
TspDTI	ATGAA	4 cut(s)	623, 705, 767, 1011
TspRI	CASTG	2 cut(s)	628, 943
Tth111I	GACNNNGTC	1 cut(s)	932
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	5 cut(s)	71, 510, 812, 1183, 1284
XceI	RCATGY	1 cut(s)	669
XmnI	GAANNNNTTC	2 cut(s)	972, 1202
XspI	CTAG	3 cut(s)	8, 1053, 1208
ZraI	GACGTC	1 cut(s)	874
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.