Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010423

Physical Location & Seq

Genomic Coordinates Reverse (-)

16635563 .. 16638481

Gene Structure 2919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCCGACTTTCACTGTCATAGCTTTAGATAGGTTGTTAGAACCTGGAGCTTCTTCCAAATCTGCTGACATGTCATCTCTTCCAAATTCCAATTCGAAGCCTCTTTCGAGTTCAATGCCGGTTCCTGACTCCAAGCTGGAGAGGAGGAACAGCACCTCCGTTGTGGAGAAGAGGCCTCATCGACCTCAGATTAGGCCGGCCCTCTATGCTACTCCGGAGGCCACACCGCTCCCGGATTCGCCCACTTCATTTCCTCCCTCGCCTTACATCATCAACCACAAGCGCCGTGGTCCAAGGCTTATGAAGAGTTACTCGGAGCAGGATGTGTCCTTGCACCAAAAAGCTGGAGGTGGAGAGAAGCTCAATGGGGATGTCAACCGTGCGGAGGCCAAGGCGGCAAAGCTCAATGGGAATGTCAGCAATGCAGAGGCAAAGGTGGCAAATTCGCCTATTGATGATTTGAATACTTTTACTTTTCAGAAGCCTGTTGAAGTGCATCATTCAAACGGTGTCCATCATTTCGTGAGCAGTAATGGGCAACTTAGAGGCAGTAATGTGGAACTAGGTAGTAGTAGCGAGCATGAAGATAACTTCTATGTGTCCAACAAGAGAAGCAGTAATGTGGAACTGAGTAATGGTTCTGCTAGGGAAGATGATTTGTTGAAGCAAGTTGCCATGAGTCCAGGGAGAGATAGTGAACGTGAAGATTTCGTTGATCCGAAAGACTCCATGAGTGTCTCAAGTTACAACACTGATGGAGAGGGAAATTTTGGGGCAGAGCGTTCTGCACAGACCAGTACGCCCACGGGGGAATTTTATGATGCTTGGGATGAACTTTCATCTGAGAGCGGGCAAGGGCAGCAGCTTTCTGTTTCTGACCTTGAAGTTGAATTGCGTGAAATGAGATTGAGCCTCATAATGGAGATAGAGAAGCGGAAGCAAGTAGAAGAATCCTTGAATAACATGCGAAGGCAGTGGCAGAGGATTAGGGAACAGTTATCTCTTGTAGGATTCACACTCCCTGAAGATCCCACTGTTGCAAGTGGTCACGAGCAACTAGGTTCTGATCCTGCAGAAGATCTGTGCCAACAAGTTTATCTCGCTAGGTTTGTATCAAATACTATTGGGAGGGGATTGATAAGGGCTGAGATGGAGATGGAGATGGAAGCTCAGGTTGAGTCAAAGAACTTTGAGATTGCTCGGTTGATGGACAAACTTCGTAACTATGAGGCTATGAATCAGGAAATGGTTCAGAGGAATCAGGATGTTCTTGAGATGGCACGGCGTGACAGGGAGAGAAGGGAAAGAAGACAAAGATGGGTATGGGGCTCGATCGCTACTGCTCTTACTCTTGGCACTGCAGCCTTGGCGTACTCATATATCCCGTCCAGCAGGGGATCGCCAGGCTTTGATTCTGAGGTTCCTGAAAGGAGTGATGCAGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

53.72

Weight (kDa)

5.39

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50910 AT5G66480
fragaria_vesca	FvH4_1g12900 FvH4_1g12900
malus_domestica	MD02G1143900.v1.1 MD15G1257200.v1.1
prunus_persica	Prupe.7G157800_v2.0.a1
pyrus_communis	pycom02g11380 pycom15g22510
rosa_chinensis	RchiOBHm_Chr2g0100981
rosa_laevigata	RLG00000017033
rosa_multiflora	Rmu_co8514483.1_g000001 Rmu_sc0001862.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141680
rosa_rugosa	Rorug02G0094700 Rorug02G0094800
rosa_samantha	Rh2AG141900 Rh2BG147100 Rh2CG148400 Rh2DG147600
rosa_wichuraiana	Rw2G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	229, 849
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	227, 383, 395, 849, 934
AclWI	GGATC	4 cut(s)	710, 1022, 1061, 1405
AcsI	RAATTY	4 cut(s)	85, 442, 766, 812
AcuI	CTGAAG	1 cut(s)	1044
AdeI	CACNNNGTG	1 cut(s)	1286
AfaI	GTAC	2 cut(s)	799, 1373
AfiI	CCNNNNNNNGG	2 cut(s)	385, 919
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	8 cut(s)	114, 463, 491, 504, 664, 884, 890, 958
AjnI	CCWGG	3 cut(s)	43, 682, 1402
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	8 cut(s)	23, 50, 136, 344, 361, 403, 865, 1169
AluI	AGCT	8 cut(s)	23, 50, 136, 344, 361, 403, 865, 1169
Alw26I	GTCTC	1 cut(s)	742
AlwI	GGATC	4 cut(s)	710, 1022, 1061, 1405
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	5 cut(s)	173, 194, 198, 219, 387
ApeKI	GCWGC	3 cut(s)	859, 862, 1361
ApoI	RAATTY	4 cut(s)	85, 442, 766, 812
Asp700I	GAANNNNTTC	1 cut(s)	1248
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	199, 290
AsuC2I	CCSGG	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	1331
BauI	CACGAG	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	1315
BbvI	GCAGC	3 cut(s)	871, 874, 1373
BccI	CCATC	8 cut(s)	522, 749, 1144, 1150, 1156, 1201, 1270, 1311
BceAI	ACGGC	2 cut(s)	270, 1298
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	3 cut(s)	45, 684, 1404
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	742
BfaI	CTAG	4 cut(s)	563, 645, 1058, 1104
BfmI	CTRYAG	2 cut(s)	1071, 1359
BfoI	RGCGCY	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	4 cut(s)	396, 860, 863, 1362
BlsI	GCNGC	4 cut(s)	397, 861, 864, 1363
Bme1390I	CCNGG	4 cut(s)	45, 233, 684, 1404
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	199, 290
BmiI	GGNNCC	2 cut(s)	123, 1422
BmrFI	CCNGG	4 cut(s)	45, 233, 684, 1404
BmsI	GCATC	3 cut(s)	505, 811, 1426
BpiI	GAAGAC	1 cut(s)	1315
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	3 cut(s)	66, 158, 366
Bpu10I	CCTNAGC	1 cut(s)	1170
Bpu14I	TTCGAA	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	724, 1292
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	6 cut(s)	286, 293, 390, 683, 804, 1365
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 679, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 919
Bse118I	RCCGGY	2 cut(s)	118, 196
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	45, 684, 1404
BseDI	CCNNGG	6 cut(s)	286, 293, 390, 683, 804, 1365
BseGI	GGATG	4 cut(s)	328, 376, 835, 1270
BseLI	CCNNNNNNNGG	2 cut(s)	385, 919
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	6 cut(s)	200, 620, 834, 1137, 1184, 1407
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	871, 874, 1373
BsgI	GTGCAG	1 cut(s)	771
Bsh1285I	CGRYCG	1 cut(s)	1335
BshFI	GGCC	5 cut(s)	175, 196, 200, 221, 389
BsiEI	CGRYCG	1 cut(s)	1335
BsiSI	CCGG	4 cut(s)	119, 197, 215, 233
BslI	CCNNNNNNNGG	2 cut(s)	385, 919
BsmAI	GTCTC	1 cut(s)	742
BsnI	GGCC	5 cut(s)	175, 196, 200, 221, 389
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	1331
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
BspACI	CCGC	5 cut(s)	227, 383, 395, 849, 934
BspANI	GGCC	5 cut(s)	175, 196, 200, 221, 389
BspCNI	CTCAG	6 cut(s)	199, 621, 835, 1138, 1183, 1408
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	123, 1422
BspMAI	CTGCAG	2 cut(s)	1075, 1363
BspPI	GGATC	4 cut(s)	710, 1022, 1061, 1405
BspT104I	TTCGAA	1 cut(s)	95
BsrBI	CCGCTC	2 cut(s)	229, 849
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	118, 196
BsrI	ACTGG	1 cut(s)	795
BssAI	RCCGGY	2 cut(s)	118, 196
BssECI	CCNNGG	6 cut(s)	286, 293, 390, 683, 804, 1365
BssMI	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
BssSI	CACGAG	1 cut(s)	1049
BssT1I	CCWWGG	3 cut(s)	293, 390, 1365
Bst2BI	CACGAG	1 cut(s)	1049
Bst2UI	CCWGG	3 cut(s)	45, 684, 1404
Bst4CI	ACNGT	5 cut(s)	16, 380, 509, 996, 1036
Bst6I	CTCTTC	3 cut(s)	84, 164, 299
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	198, 578, 851, 1441
BstDEI	CTNAG	7 cut(s)	186, 542, 629, 843, 1146, 1170, 1416
BstDSI	CCRYGG	2 cut(s)	286, 804
BstF5I	GGATG	4 cut(s)	328, 376, 835, 1270
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	6 cut(s)	718, 1030, 1069, 1081, 1335, 1400
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
BstMCI	CGRYCG	1 cut(s)	1335
BstMWI	GCNNNNNNNGC	5 cut(s)	206, 395, 437, 859, 1367
BstNI	CCWGG	3 cut(s)	45, 684, 1404
BstNSI	RCATGY	2 cut(s)	73, 967
BstSCI	CCNGG	4 cut(s)	43, 231, 682, 1402
BstSFI	CTRYAG	2 cut(s)	1071, 1359
BstV1I	GCAGC	3 cut(s)	871, 874, 1373
BstV2I	GAAGAC	1 cut(s)	1315
BstX2I	RGATCY	2 cut(s)	1027, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	344
BstYI	RGATCY	2 cut(s)	1027, 1078
BsuRI	GGCC	5 cut(s)	175, 196, 200, 221, 389
BtgI	CCRYGG	2 cut(s)	286, 804
BtsCI	GGATG	4 cut(s)	328, 376, 835, 1270
BtsI	GCAGTG	2 cut(s)	980, 1356
BtsIMutI	CAGTG	5 cut(s)	12, 750, 980, 1032, 1356
Cac8I	GCNNGC	4 cut(s)	198, 578, 851, 1441
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	2 cut(s)	118, 196
Cfr13I	GGNCC	2 cut(s)	199, 290
Csp6I	GTAC	2 cut(s)	798, 1372
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	5 cut(s)	70, 581, 676, 730, 964
CviQI	GTAC	2 cut(s)	798, 1372
DdeI	CTNAG	7 cut(s)	186, 542, 629, 843, 1146, 1170, 1416
DpnI	GATC	6 cut(s)	717, 1029, 1068, 1080, 1334, 1399
DpnII	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
DraIII	CACNNNGTG	1 cut(s)	1286
Eam1104I	CTCTTC	3 cut(s)	84, 164, 299
EarI	CTCTTC	3 cut(s)	84, 164, 299
Eco130I	CCWWGG	3 cut(s)	293, 390, 1365
Eco147I	AGGCCT	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	1331
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	1044
EcoRII	CCWGG	3 cut(s)	43, 682, 1402
EcoT14I	CCWWGG	3 cut(s)	293, 390, 1365
EcoT38I	GRGCYC	1 cut(s)	1331
ErhI	CCWWGG	3 cut(s)	293, 390, 1365
FaeI	CATG	5 cut(s)	73, 584, 679, 733, 967
FatI	CATG	5 cut(s)	69, 580, 675, 729, 963
FauI	CCCGC	1 cut(s)	842
Fnu4HI	GCNGC	4 cut(s)	396, 860, 863, 1362
FokI	GGATG	4 cut(s)	335, 383, 842, 1277
FriOI	GRGCYC	1 cut(s)	1331
FseI	GGCCGGCC	1 cut(s)	200
Fsp4HI	GCNGC	4 cut(s)	396, 860, 863, 1362
FspBI	CTAG	4 cut(s)	563, 645, 1058, 1104
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	4 cut(s)	396, 860, 863, 1362
GsuI	CTGGAG	3 cut(s)	66, 158, 366
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	5 cut(s)	175, 196, 200, 221, 389
HapII	CCGG	4 cut(s)	119, 197, 215, 233
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	73, 584, 679, 733, 967
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HpaII	CCGG	4 cut(s)	119, 197, 215, 233
Hpy166II	GTNNAC	2 cut(s)	376, 698
Hpy188I	TCNGA	9 cut(s)	189, 316, 480, 720, 844, 877, 1066, 1254, 1417
Hpy188III	TCNNGA	8 cut(s)	125, 215, 523, 1049, 1241, 1262, 1271, 1424
Hpy8I	GTNNAC	2 cut(s)	376, 698
HpyAV	CCTTC	2 cut(s)	963, 1293
HpyCH4III	ACNGT	5 cut(s)	16, 380, 509, 996, 1036
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	8 cut(s)	334, 425, 496, 788, 1040, 1073, 1361, 1439
HpyF10VI	GCNNNNNNNGC	5 cut(s)	206, 395, 437, 859, 1367
HpyF3I	CTNAG	7 cut(s)	186, 542, 629, 843, 1146, 1170, 1416
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	5 cut(s)	73, 584, 679, 733, 967
HspAI	GCGC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
LmnI	GCTCC	3 cut(s)	47, 234, 316
Lsp1109I	GCAGC	3 cut(s)	871, 874, 1373
LweI	GCATC	3 cut(s)	505, 811, 1426
MaeI	CTAG	4 cut(s)	563, 645, 1058, 1104
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	5 cut(s)	308, 743, 1046, 1220, 1286
MalI	GATC	6 cut(s)	717, 1029, 1068, 1080, 1334, 1399
MbiI	CCGCTC	2 cut(s)	229, 849
MboI	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
MflI	RGATCY	2 cut(s)	1027, 1078
MhlI	GDGCHC	1 cut(s)	1331
MluCI	AATT	6 cut(s)	85, 91, 442, 766, 812, 890
MlyI	GAGTC	4 cut(s)	122, 688, 719, 1187
MmeI	TCCRAC	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	1248
MspI	CCGG	4 cut(s)	119, 197, 215, 233
MspR9I	CCNGG	4 cut(s)	45, 233, 684, 1404
MvaI	CCWGG	3 cut(s)	45, 684, 1404
MwoI	GCNNNNNNNGC	5 cut(s)	206, 395, 437, 859, 1367
NaeI	GCCGGC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	73, 584, 679, 733, 967
NlaIV	GGNNCC	2 cut(s)	123, 1422
NmuCI	GTSAC	2 cut(s)	1046, 1286
NspI	RCATGY	2 cut(s)	73, 967
NspV	TTCGAA	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	175
PciI	ACATGT	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	1248
PfeI	GAWTC	6 cut(s)	236, 950, 1011, 1237, 1258, 1412
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	397, 861, 864, 1363
Ple19I	CGATCG	1 cut(s)	1335
PleI	GAGTC	4 cut(s)	122, 687, 719, 1186
PpsI	GAGTC	4 cut(s)	122, 687, 719, 1186
PscI	ACATGT	1 cut(s)	69
Psp6I	CCWGG	3 cut(s)	43, 682, 1402
PspGI	CCWGG	3 cut(s)	43, 682, 1402
PspN4I	GGNNCC	2 cut(s)	123, 1422
PspPI	GGNCC	2 cut(s)	199, 290
PstI	CTGCAG	2 cut(s)	1075, 1363
PsuI	RGATCY	2 cut(s)	1027, 1078
PvuI	CGATCG	1 cut(s)	1335
RigI	GGCCGGCC	1 cut(s)	200
RsaI	GTAC	2 cut(s)	799, 1373
RsaNI	GTAC	2 cut(s)	798, 1372
SatI	GCNGC	4 cut(s)	396, 860, 863, 1362
Sau3AI	GATC	6 cut(s)	715, 1027, 1066, 1078, 1332, 1397
Sau96I	GGNCC	2 cut(s)	199, 290
SchI	GAGTC	4 cut(s)	122, 688, 719, 1187
ScrFI	CCNGG	4 cut(s)	45, 233, 684, 1404
SduI	GDGCHC	1 cut(s)	1331
SfaNI	GCATC	3 cut(s)	505, 811, 1426
SfcI	CTRYAG	2 cut(s)	1071, 1359
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	739, 1271
SmoI	CTYRAG	2 cut(s)	739, 1271
Sse9I	AATT	6 cut(s)	85, 91, 442, 766, 812, 890
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	5 cut(s)	227, 383, 395, 849, 934
SspMI	CTAG	4 cut(s)	563, 645, 1058, 1104
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	4 cut(s)	43, 231, 682, 1402
StyI	CCWWGG	3 cut(s)	293, 390, 1365
TaaI	ACNGT	5 cut(s)	16, 380, 509, 996, 1036
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	4 cut(s)	95, 107, 181, 1331
TasI	AATT	6 cut(s)	85, 91, 442, 766, 812, 890
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	6 cut(s)	236, 950, 1011, 1237, 1258, 1412
TscAI	CASTG	5 cut(s)	19, 757, 980, 1039, 1363
TseFI	GTSAC	2 cut(s)	1046, 1286
TseI	GCWGC	3 cut(s)	859, 862, 1361
Tsp45I	GTSAC	2 cut(s)	1046, 1286
TspDTI	ATGAA	6 cut(s)	237, 317, 597, 828, 846, 1250
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	5 cut(s)	19, 757, 980, 1039, 1363
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	4 cut(s)	85, 442, 766, 812
XceI	RCATGY	2 cut(s)	73, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	1248
XspI	CTAG	4 cut(s)	563, 645, 1058, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.