Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005637

Physical Location & Seq

Genomic Coordinates Reverse (-)

16691062 .. 16692284

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCGTCGTCCGTACTGCCTTCAGCGAGAACAGAGCTCTTCAACCCAATTCATGAAACCAGGCTCATTGGCCTCACAAGACCATTTAATTGCAACAGAAGCAAATGTGTGATGAACAGGAGGAGTTTTGCTTTCAGAGGAGTTGCAGCTGCAGGACTCTCAGTCATGGGTTCTTCGTTGACTGCTCAGCCAGTTCAGGGTGTTGAAAGACTGGAATTTAAGCCGGAGGGGTACAATTTTTGGACATGGAGGGGTCACAAAATTCATTATGTGGTACAAGGAGAAGGGCCTCCTGTTGTTCTTATTCATGGTTTTGGTGCTTCTGCGTTTCACTGGAGGTACAATATTCCAGAGTTGGCTAAAAAATATAAGGTTTACGCTATAGACTTGCTGGGGTTCGGGTGGAGTGAGAAAGCACTTATTGATTATGATGCCATGGTTTGGAGAGATCAAGTGGAGGATTTCTTAAAGGAGATAGTGAAAGAACCGACAGTTTTAGTTGGAAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

171

Amino Acids

19.32

Weight (kDa)

9.33

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	97 - 168	9.7e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	99 - 169	3.3e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36530 AT4G36530
fragaria_vesca	FvH4_1g13000 FvH4_1g13000 FvH4_1g13000
malus_domestica	MD15G1258200.v1.1
prunus_persica	Prupe.7G157100_v2.0.a1
pyrus_communis	pycom02g11440 pycom15g22600
rosa_chinensis	RchiOBHm_Chr2g0101081 RchiOBHm_Chr4g0423241 RchiOBHm_Chr6g0260581
rosa_laevigata	RLG00000017050
rosa_multiflora	Rmu_sc0007698.1_g000013
rosa_roxburghii	Rroxscaffold_2G00095650 Rroxscaffold_2G00141570 Rroxscaffold_5G00364280
rosa_rugosa	Rorug02G0097000
rosa_samantha	Rh2AG143000 Rh2BG148100 Rh2CG149600 Rh2DG148600 Rh5DG463100 Rh6CG159800
rosa_wichuraiana	Rw2G003750 Rw2G011270 Rw3G026160 Rw7G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	215, 261
AcuI	CTGAAG	1 cut(s)	6
AfaI	GTAC	4 cut(s)	15, 233, 276, 341
AfiI	CCNNNNNNNGG	2 cut(s)	197, 441
AgsI	TTSAA	2 cut(s)	43, 206
AhdI	GACNNNNNGTC	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	2 cut(s)	37, 149
AluI	AGCT	2 cut(s)	37, 149
Alw21I	GWGCWC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	70, 287
ApeKI	GCWGC	2 cut(s)	146, 149
ApoI	RAATTY	2 cut(s)	215, 261
AspS9I	GGNCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	136, 158
BciT130I	CCWGG	1 cut(s)	61
BfmI	CTRYAG	2 cut(s)	150, 381
BisI	GCNGC	2 cut(s)	147, 150
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	148, 151
Bme1390I	CCNGG	1 cut(s)	61
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	355
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 441
Bse1I	ACTGG	3 cut(s)	191, 216, 338
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	197, 441
BseMII	CTCAG	2 cut(s)	174, 200
BseNI	ACTGG	3 cut(s)	191, 216, 338
BseRI	GAGGAG	2 cut(s)	136, 153
BseXI	GCAGC	2 cut(s)	136, 158
BseYI	CCCAGC	1 cut(s)	391
BshFI	GGCC	2 cut(s)	72, 289
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	197, 441
BsnI	GGCC	2 cut(s)	72, 289
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	448
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	435
BspANI	GGCC	2 cut(s)	72, 289
BspCNI	CTCAG	2 cut(s)	173, 199
BspHI	TCATGA	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	191, 216, 338
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	160, 186
BstDSI	CCRYGG	1 cut(s)	435
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	150, 381
BstV1I	GCAGC	2 cut(s)	136, 158
BsuRI	GGCC	2 cut(s)	72, 289
BtgI	CCRYGG	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	331
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	4 cut(s)	14, 232, 275, 340
CviAII	CATG	5 cut(s)	53, 166, 246, 308, 436
CviJI	RGCY	8 cut(s)	37, 64, 72, 149, 190, 223, 289, 359
CviKI_1	RGCY	8 cut(s)	37, 64, 72, 149, 190, 223, 289, 359
CviQI	GTAC	4 cut(s)	14, 232, 275, 340
DdeI	CTNAG	2 cut(s)	160, 186
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	44
Eam1105I	GACNNNNNGTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	5 cut(s)	56, 169, 249, 311, 439
FaiI	YATR	9 cut(s)	54, 167, 247, 270, 309, 369, 383, 429, 437
FatI	CATG	5 cut(s)	52, 165, 245, 307, 435
Fnu4HI	GCNGC	2 cut(s)	147, 150
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	147, 150
GluI	GCNGC	2 cut(s)	147, 150
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	72, 289
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	5 cut(s)	56, 169, 249, 311, 439
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	180, 376
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	53, 350
Hpy8I	GTNNAC	2 cut(s)	180, 376
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	30, 278
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	93, 146, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	160, 186
Hsp92II	CATG	5 cut(s)	56, 169, 249, 311, 439
Kzo9I	GATC	1 cut(s)	448
LguI	GCTCTTC	1 cut(s)	44
Lsp1109I	GCAGC	2 cut(s)	136, 158
LweI	GCATC	1 cut(s)	421
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	31, 165
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	48, 88, 215, 235, 261
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	83, 114, 131, 220, 243, 300, 330, 451
MseI	TTAA	3 cut(s)	87, 219, 467
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	435
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	5 cut(s)	56, 169, 249, 311, 439
NmuCI	GTSAC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	148, 151
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	59
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	15, 233, 276, 341
RsaNI	GTAC	4 cut(s)	14, 232, 275, 340
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	87, 219, 467
SatI	GCNGC	2 cut(s)	147, 150
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	39, 151, 341, 375, 512
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	2 cut(s)	150, 381
Sse9I	AATT	5 cut(s)	48, 88, 215, 235, 261
SspI	AATATT	1 cut(s)	346
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	493
TasI	AATT	5 cut(s)	48, 88, 215, 235, 261
Tru1I	TTAA	3 cut(s)	87, 219, 467
Tru9I	TTAA	3 cut(s)	87, 219, 467
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	146, 149
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	41, 69, 128, 254, 296
TspRI	CASTG	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	215, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.