Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005019

Physical Location & Seq

Genomic Coordinates Forward (+)

16695393 .. 16697041

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGATTTTGGAGGATTCGCTGGTGAGCTCCAAGCTCTCTCCGCCCAATACATACGGAGCCGTCGTTCTCGGCGGCACCTTCGACCGATTACACAACGGTCATCGCCTGTTTCTCAAGGCGGCGGCGGAGCTGGCAAGGGATCGGATTGTGGTCGGAATTTGCGACGGACCCATGTTGACTAACAAGCAGTTTGCTGATTTGATACAACCCATTGAGGAAAGGAGCAATAGTGTTGAGAATTACATCAAGTCTATCAAGCAGGGGCTGGTAGTGCAAGTTGAACCTATTACGGACCCCTATGGTCCCTCAATAGTCGATGAGAATTTAGAGGCAATTGTTGTCAGCAAGGAGACTTTACCGGGGGGACTGTCTGTTAATAAGAAGAGAGTTGACCGAGGTCTCTCACAGCTTAAGATTGAAGTTGTAGATCTAGTGTCCGAAGGATCTAGTGGAGATAAGCTTAGTTCAACATCATTAAGGAAGCTTGAGGCGGAGAAGGCCAAGATCCGACCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004595 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006140 GO:0006163 GO:0006164 GO:0006629 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010876 GO:0015936 GO:0015937 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019637 GO:0019693 GO:0019915 GO:0030808 GO:0031323 GO:0031326 GO:0033036 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0040007 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051179 GO:0051186 GO:0051188 GO:0051193 GO:0051196 GO:0051235 GO:0055086 GO:0062012 GO:0065007 GO:0065008 GO:0070566 GO:0071704 GO:0072521 GO:0072522 GO:0080020 GO:0080090 GO:0090407 GO:1900371 GO:1900542 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CTP_transf_like

Protein Analysis

174

Amino Acids

18.76

Weight (kDa)

6.16

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	23 - 162	1.6e-10	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18250
fragaria_vesca	FvH4_1g13011 FvH4_3g26020
malus_domestica	MD02G1144700.v1.1 MD15G1258400.v1.1 MD15G1258500.v1.1
prunus_persica	Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1 Prupe.7G156900_v2.0.a1
pyrus_communis	pycom02g11460 pycom15g22620 pycom15g22630
rosa_chinensis	RchiOBHm_Chr2g0101171
rosa_laevigata	RLG00000017052
rosa_multiflora	Rmu_sc0003441.1_g000094 Rmu_sc0007698.1_g000006
rosa_roxburghii	Rroxscaffold_2G00141540
rosa_rugosa	Rorug02G0100500
rosa_samantha	Rh2AG144100 Rh2BG149100 Rh2CG150400 Rh2DG149600 Rh5AG314600 Rh5CG350500
rosa_wichuraiana	Rw5G029410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	7 cut(s)	44, 75, 122, 125, 128, 494, 515
AclWI	GGATC	3 cut(s)	150, 454, 502
AcsI	RAATTY	2 cut(s)	159, 325
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	284, 422, 471
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	6 cut(s)	30, 37, 133, 412, 463, 487
AluI	AGCT	6 cut(s)	30, 37, 133, 412, 463, 487
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	347, 407
AlwI	GGATC	3 cut(s)	150, 454, 502
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	159, 325
AspS9I	GGNCC	3 cut(s)	170, 295, 305
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	170, 295, 305
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	347, 407
BfaI	CTAG	2 cut(s)	434, 450
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	76, 123, 126
BlsI	GCNGC	3 cut(s)	77, 124, 127
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	3 cut(s)	170, 295, 305
BmgT120I	GGNCC	3 cut(s)	170, 295, 305
BmiI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BmrFI	CCNGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	101, 509
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	362, 397
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 217, 247
BseDI	CCNNGG	2 cut(s)	362, 397
Bsh1285I	CGRYCG	2 cut(s)	88, 515
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	2 cut(s)	88, 515
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	2 cut(s)	291, 381
BsmAI	GTCTC	2 cut(s)	347, 407
BsmFI	GGGAC	2 cut(s)	291, 381
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	4 cut(s)	142, 430, 446, 507
BspACI	CCGC	7 cut(s)	44, 75, 122, 125, 128, 494, 515
BspANI	GGCC	1 cut(s)	503
BspLI	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
BspPI	GGATC	3 cut(s)	150, 454, 502
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	362, 397
BssMI	GATC	4 cut(s)	142, 430, 446, 507
Bst4CI	ACNGT	2 cut(s)	101, 372
Bst6I	CTCTTC	1 cut(s)	380
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	464
BstKTI	GATC	4 cut(s)	145, 433, 449, 510
BstMAI	GTCTC	2 cut(s)	347, 407
BstMBI	GATC	4 cut(s)	142, 430, 446, 507
BstMCI	CGRYCG	2 cut(s)	88, 515
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	361
BstX2I	RGATCY	3 cut(s)	430, 446, 507
BstYI	RGATCY	3 cut(s)	430, 446, 507
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	170, 295, 305
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	9 cut(s)	30, 37, 62, 133, 268, 412, 463, 487, 503
CviKI_1	RGCY	9 cut(s)	30, 37, 62, 133, 268, 412, 463, 487, 503
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	4 cut(s)	144, 432, 448, 509
DpnII	GATC	4 cut(s)	142, 430, 446, 507
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	3 cut(s)	33, 143, 509
Ecl136II	GAGCTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	3 cut(s)	170, 295, 305
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	1 cut(s)	178
FaiI	YATR	4 cut(s)	55, 176, 303, 520
FaqI	GGGAC	2 cut(s)	291, 381
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	76, 123, 126
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	76, 123, 126
FspBI	CTAG	2 cut(s)	434, 450
GluI	GCNGC	3 cut(s)	76, 123, 126
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	180, 394
HindII	GTYRAC	2 cut(s)	180, 394
HindIII	AAGCTT	2 cut(s)	461, 485
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	2 cut(s)	180, 394
Hpy188I	TCNGA	4 cut(s)	147, 158, 442, 512
Hpy8I	GTNNAC	2 cut(s)	180, 394
Hpy99I	CGWCG	2 cut(s)	68, 170
HpyAV	CCTTC	3 cut(s)	91, 437, 493
HpyCH4III	ACNGT	2 cut(s)	101, 372
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	142, 430, 446, 507
LmnI	GCTCC	4 cut(s)	35, 59, 130, 225
LpnPI	CCDG	6 cut(s)	8, 119, 122, 248, 254, 375
MaeI	CTAG	2 cut(s)	434, 450
MalI	GATC	4 cut(s)	144, 432, 448, 509
MboI	GATC	4 cut(s)	142, 430, 446, 507
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	3 cut(s)	430, 446, 507
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	4 cut(s)	159, 241, 325, 336
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	7, 211, 319, 325, 392, 484
MseI	TTAA	3 cut(s)	378, 414, 479
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	43, 134, 274, 500
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	142, 430, 446, 507
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
NmeAIII	GCCGAG	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 162
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	77, 124, 127
PshAI	GACNNNNGTC	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	32
PspN4I	GGNNCC	5 cut(s)	61, 79, 172, 297, 307
PspPI	GGNCC	3 cut(s)	170, 295, 305
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	3 cut(s)	430, 446, 507
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	378, 414, 479
SatI	GCNGC	3 cut(s)	76, 123, 126
Sau3AI	GATC	4 cut(s)	142, 430, 446, 507
Sau96I	GGNCC	3 cut(s)	170, 295, 305
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	9 cut(s)	32, 39, 83, 135, 289, 403, 414, 465, 489
SinI	GGWCC	3 cut(s)	170, 295, 305
SmlI	CTYRAG	3 cut(s)	116, 413, 488
SmoI	CTYRAG	3 cut(s)	116, 413, 488
Sse9I	AATT	4 cut(s)	159, 241, 325, 336
SsiI	CCGC	7 cut(s)	44, 75, 122, 125, 128, 494, 515
SspMI	CTAG	2 cut(s)	434, 450
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	2 cut(s)	101, 372
TaqI	TCGA	2 cut(s)	84, 318
TaqII	GACCGA	2 cut(s)	102, 411
TasI	AATT	4 cut(s)	159, 241, 325, 336
TauI	GCSGC	3 cut(s)	78, 125, 128
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	378, 414, 479
Tru9I	TTAA	3 cut(s)	378, 414, 479
TspGWI	ACGGA	3 cut(s)	72, 183, 308
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	3 cut(s)	170, 295, 305
XapI	RAATTY	2 cut(s)	159, 325
XspI	CTAG	2 cut(s)	434, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.