pycom15g25160

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011724
Physical Location & Seq
Forward (+)
19549186 .. 19550160
975 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 765 bp
ATGGCTCTGCAAGAAGAACCCCAAGAGCTCCAAAACCCTCCAATGGCGTTCGACCTTTTATTATTCTGCGAGGAAGGATTTGAGGAAGATTTGAGAGACAATGGTAGTGATGAGGAGAGCGAGAACTGTGATGGGTTTTCAAAAAAGCATTCATCTTTCCCTTTGGTTGTTCTGGAAAGTGATATTTTCTGGGAAAATGATGAACTTTCCTCTCTAATCTCCAAAGAGGAACAAACCCATGTGTGTTTCAGTGGCGAAATCTCAGATGGGTCTTTAATGGCAGCTCGGAAAGAGGCGGTTGAGTGGATTCTGAGTGTAAAGGCACACTATGGGTTCTCCTCTTTGACCACCGTTCTAGCTGTGAACTACTTTGATAGATTCATTGCCAGTCGGCCGTTTCAGAGGGACAAGCCGTGGATGAGTCAGCTCGCCGCTGTGGCCTGCGTCTCGTTGGCCGCCAAAGTGGAGGAGACCCATGTGCCCCTTCTCTTAGATTTGCAAGTGGAGGAATCAAAGTATGTTTTCGAAGCAAAAACCATTCAAAGAATGGAGCTTTTGGTGCTATCGACTCTTGCGTGGAGGATGAATCCGGTGACCCCAAATTCATACTTTGATCACATCATCAGGAGGTTCGGTTTGAAGATCCACCTGCATTGGGAGTTTCTGTGGAGATGTGAGCGTTTACTTCTATCCGTCATTGCGGTCCAGATTTACTTGTTATTTGCCTTCCGTATTAGCTACTGCAACAATGCTGTATGTTATTGA

Protein Analysis

255

Amino Acids

29.35

Weight (kDa)

4.83

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 93 - 196 1.2e-26 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011724)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50070
fragaria_vesca FvH4_1g16680
malus_domestica MD02G1178200.v1.1 MD15G1288100.v1.1
prunus_persica Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1 Prupe.6G229700_v2.0.a1
pyrus_communis pycom02g14430 pycom15g25160
rosa_chinensis RchiOBHm_Chr2g0106601
rosa_laevigata RLG00000017519
rosa_multiflora Rmu_sc0006221.1_g000010
rosa_roxburghii Rroxscaffold_2G00136990
rosa_rugosa Rorug02G0136600
rosa_samantha Rh2AG187800 Rh2BG198800 Rh2CG192900 Rh2DG194000
rosa_wichuraiana Rw2G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 657
AciI CCGC 4 cut(s) 296, 432, 456, 701
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 2 cut(s) 392, 453
AcsI RAATTY 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 43, 655
AgsI TTSAA 3 cut(s) 141, 542, 640
AluBI AGCT 6 cut(s) 28, 284, 359, 427, 553, 738
AluI AGCT 6 cut(s) 28, 284, 359, 427, 553, 738
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 90, 451, 464
AlwI GGATC 1 cut(s) 637
AoxI GGCC 3 cut(s) 392, 438, 453
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 604
AsuII TTCGAA 1 cut(s) 525
AvaII GGWCC 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 125, 260
BceAI ACGGC 2 cut(s) 379, 397
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 3 cut(s) 90, 451, 464
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 657
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 3 cut(s) 282, 432, 456
BlsI GCNGC 3 cut(s) 283, 433, 457
Bme18I GGWCC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 703
Bpu14I TTCGAA 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 4 cut(s) 619, 649, 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 655
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 2 cut(s) 381, 696
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 2 cut(s) 423, 588
BseLI CCNNNNNNNGG 2 cut(s) 43, 655
BseMI GCAATG 2 cut(s) 381, 696
BseMII CTCAG 2 cut(s) 276, 302
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 3 cut(s) 128, 328, 482
BseSI GKGCMC 1 cut(s) 483
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 3 cut(s) 394, 440, 455
BsiEI CGRYCG 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 43, 655
BsmAI GTCTC 3 cut(s) 90, 451, 464
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 3 cut(s) 394, 440, 455
Bso31I GGTCTC 1 cut(s) 464
Bsp119I TTCGAA 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 30, 483
Bsp143I GATC 2 cut(s) 613, 642
BspACI CCGC 4 cut(s) 296, 432, 456, 701
BspANI GGCC 3 cut(s) 394, 440, 455
BspCNI CTCAG 2 cut(s) 275, 303
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 381, 696
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 2 cut(s) 613, 642
Bst4CI ACNGT 2 cut(s) 128, 352
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 429, 442
BstDEI CTNAG 3 cut(s) 262, 311, 490
BstDSI CCRYGG 1 cut(s) 413
BstEII GGTNACC 1 cut(s) 592
BstF5I GGATG 2 cut(s) 423, 588
BstKTI GATC 2 cut(s) 616, 645
BstMAI GTCTC 3 cut(s) 90, 451, 464
BstMBI GATC 2 cut(s) 613, 642
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 2 cut(s) 437, 559
BstPI GGTNACC 1 cut(s) 592
BstSLI GKGCMC 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
BstZI CGGCCG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 394, 440, 455
BtgI CCRYGG 1 cut(s) 413
BtsCI GGATG 2 cut(s) 423, 588
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 2 cut(s) 429, 442
Cfr13I GGNCC 1 cut(s) 703
CseI GACGC 1 cut(s) 433
CspCI CAANNNNNGTGG 2 cut(s) 635, 670
CviAII CATG 2 cut(s) 239, 476
DdeI CTNAG 3 cut(s) 262, 311, 490
DpnI GATC 2 cut(s) 615, 644
DpnII GATC 2 cut(s) 613, 642
EaeI YGGCCR 2 cut(s) 392, 453
EagI CGGCCG 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 28
EclXI CGGCCG 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 703
Eco52I CGGCCG 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 2 cut(s) 242, 479
FaiI YATR 6 cut(s) 240, 330, 477, 519, 607, 757
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 238, 475
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 3 cut(s) 282, 432, 456
FokI GGATG 2 cut(s) 430, 595
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 3 cut(s) 282, 432, 456
FspBI CTAG 1 cut(s) 356
GluI GCNGC 3 cut(s) 282, 432, 456
HaeIII GGCC 3 cut(s) 394, 440, 455
HapII CCGG 1 cut(s) 590
HgaI GACGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 242, 479
HinfI GANTC 6 cut(s) 307, 378, 421, 509, 568, 586
HpaII CCGG 1 cut(s) 590
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 2 cut(s) 364, 683
Hpy188I TCNGA 4 cut(s) 265, 288, 312, 402
Hpy188III TCNNGA 3 cut(s) 173, 625, 706
Hpy8I GTNNAC 2 cut(s) 364, 683
HpyAV CCTTC 3 cut(s) 68, 494, 736
HpyCH4III ACNGT 2 cut(s) 128, 352
HpyCH4V TGCA 4 cut(s) 10, 499, 652, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 559
HpyF3I CTNAG 3 cut(s) 262, 311, 490
Hsp92II CATG 2 cut(s) 242, 479
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 2 cut(s) 613, 642
LmnI GCTCC 2 cut(s) 33, 550
LpnPI CCDG 8 cut(s) 158, 175, 400, 454, 603, 610, 662, 719
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 592
MalI GATC 2 cut(s) 615, 644
MboI GATC 2 cut(s) 613, 642
MboII GAAGA 3 cut(s) 26, 98, 652
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 2 cut(s) 30, 483
MluCI AATT 1 cut(s) 601
MlyI GAGTC 2 cut(s) 430, 562
MseI TTAA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 437, 559
NdeII GATC 2 cut(s) 613, 642
NlaIII CATG 2 cut(s) 242, 479
NmuCI GTSAC 1 cut(s) 592
NspV TTCGAA 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 307, 378, 509, 586
PkrI GCNGC 3 cut(s) 283, 433, 457
PleI GAGTC 2 cut(s) 429, 562
PpsI GAGTC 2 cut(s) 429, 562
Psp124BI GAGCTC 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 592
PspPI GGNCC 1 cut(s) 703
PsuI RGATCY 1 cut(s) 642
SacI GAGCTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 282, 432, 456
Sau3AI GATC 2 cut(s) 613, 642
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 2 cut(s) 430, 562
SduI GDGCHC 2 cut(s) 30, 483
SetI ASST 9 cut(s) 30, 57, 286, 361, 429, 555, 632, 651, 740
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 1 cut(s) 703
Sse9I AATT 1 cut(s) 601
SsiI CCGC 4 cut(s) 296, 432, 456, 701
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 30
TaaI ACNGT 2 cut(s) 128, 352
TaqI TCGA 3 cut(s) 51, 525, 566
TasI AATT 1 cut(s) 601
TauI GCSGC 2 cut(s) 434, 458
TfiI GAWTC 4 cut(s) 307, 378, 509, 586
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 5 cut(s) 141, 216, 370, 594, 599
TspGWI ACGGA 2 cut(s) 682, 719
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.