Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Forward (+)

20543835 .. 20544391

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTTTCTGTGATTAAAGGTCTATTTGATCTTCCAGTTGAAACCAAATGCCAGAAGAACAGTGATCCCAGCTATGTTAGCCAATATTCTTTCCTTCCTCTCTACAAATCCTTGGGAGTCGATTACGCAACAACTCCTGAAGGAATAGAAAAATTCACAAATATGATGTGTGAAAAAGCTTATACCATCTCAAATCTGGTGGCTGAGCTGACTAAACTGGTGACAAAAATAGTGTTTGATGTTTATGGGGTAGCGAGGCTTTACGAATCTCACATGGCGTCAACAAATTACCTGCTCAGATGCTTTAAGTATAAAGAACAGACGGAGAATGAAACCAACGTGGGACGGCTCCTCACACGGACAAGGCTTTCTTATCCATTCTTCACCAAAAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

133

Amino Acids

15.33

Weight (kDa)

9.1

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	3 cut(s)	72, 179, 208
AluI	AGCT	3 cut(s)	72, 179, 208
AlwI	GGATC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	232, 376
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	362
BfuAI	ACCTGC	1 cut(s)	300
BlpI	GCTNAGC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	350
BmsI	GCATC	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	2 cut(s)	35, 222
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	195, 310
BseNI	ACTGG	2 cut(s)	35, 222
BseRI	GAGGAG	1 cut(s)	341
BseYI	CCCAGC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	28, 64
Bsp1720I	GCTNAGC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	196, 309
BspLI	GGNNCC	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	35, 222
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	28, 64
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	204, 296
BstKTI	GATC	2 cut(s)	31, 67
BstMBI	GATC	2 cut(s)	28, 64
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	300
CseI	GACGC	1 cut(s)	267
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	8 cut(s)	72, 81, 179, 203, 208, 259, 349, 367
CviKI_1	RGCY	8 cut(s)	72, 81, 179, 203, 208, 259, 349, 367
DdeI	CTNAG	2 cut(s)	204, 296
DpnI	GATC	2 cut(s)	30, 66
DpnII	GATC	2 cut(s)	28, 64
Eco130I	CCWWGG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	75, 164, 183, 246, 275, 312
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	72
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	2 cut(s)	117, 266
HphI	GGTGA	2 cut(s)	232, 376
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	104, 134
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	204, 296
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	28, 64
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	7 cut(s)	48, 65, 82, 150, 182, 203, 305
LweI	GCATC	1 cut(s)	290
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	30, 66
MboI	GATC	2 cut(s)	28, 64
MboII	GAAGA	3 cut(s)	23, 67, 373
MluCI	AATT	2 cut(s)	152, 286
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	4 cut(s)	108, 249, 362, 387
MseI	TTAA	2 cut(s)	15, 306
MslI	CAYNNNNRTG	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	2 cut(s)	28, 64
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	15, 306
Sau3AI	GATC	2 cut(s)	28, 64
SchI	GAGTC	1 cut(s)	126
SetI	ASST	7 cut(s)	22, 74, 181, 210, 294, 342, 398
SfaNI	GCATC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	152, 286
SspI	AATATT	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	152, 286
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	15, 306
Tru9I	TTAA	2 cut(s)	15, 306
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	2 cut(s)	338, 373
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.