Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005272

Physical Location & Seq

Genomic Coordinates Forward (+)

20584609 .. 20588356

Gene Structure 3748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATCAAACCTATATCGAAGGCGACGATGACATAACTAAATTTACCATAAATATCAGGGCAGCAATTCCCGAAACTCGGAAAGATAGTTACTTTAATTTCCAAGAACTAGCTAAGACATACAGAATCAATAGAGAGAGATTTATCATGGGTTCAGAAGGTCAGGCAAAGCTTCCTGTTGTAGATTTAACCAACGCTGAAAATTTGAAGCCTGGAACTGAGGCATGGAGGTCGACATGCAAACAAGTCCAGCAAGCACTTGAAGATTGTGGCTGCTTTGAAGCCACTTACGATGGAGTTCCTTTGGACCTTCACAACGCCATGTTTTCTGTGAGTAATGGCCTATTTGATCTTCCAGTTGAAACCAAATGCCAGAAGACCAGTGACAAGCCTAACCACAGCTACATCGGCCAAATTTCTTCCCTTCCACTTTACGAATCCTTGGGAGTCGATTATGCGACAACTCCTGAAGGAGTTGAAAAATTCACAAATATGATGTGGCCTGCAGGAAGTGACGAATTTCGTGAGAAAGTTTATACCTTCTCAAATCTGGTAGCCGAGTTAACTAAATTGGTGACGAAAATGGTGTTTCACAATTATGGGGTACAAAGGCTTTACGAATCTCACATGGCGTCGACTATTTACCTGCTGAGATGGTCTCAGTATAGAGAACAAAAAGAGAATGAAACCAACGTGGGACTACCCCCTCACACAGACAAGGCCTTCATATCCATTCTTCACCAAAAGGAGGTGAACGGTTTGGAAGTGAAAACAAAGGATGGTCAGTGGTTTGTTGCTGAGCCTTCACCCACATCATTTGTAGTCATGGCAGGCGACGCTTTCATGGCATGGAGCAATGGTAGAGTGCCGTCTTGTTTTCACCAAGTGATCATGAAACAGAACAAAACCAGATTATCAATTGGACTCTTCTCATGGCTTAATGGAACTGTACAAGTACCGGAAGAGCTAATCGACGACCAACACCCCTTATCCTATAAGCCATTTGATCATTTCAGTTACCTTCACTTCTCTGTAACACCAGAGGGAAAGCAATCCAAGTGTGCTATCAAAACCTACTGTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

363

Amino Acids

41.21

Weight (kDa)

5.63

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 136	1.3e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 310	1.4e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52800
fragaria_vesca	FvH4_6g30750
malus_domestica	MD03G1070400.v1.1 MD11G1074400.v1.1 MD17G1199500.v1.1 MD17G1200100.v1.1 MD17G1200500.v1.1
prunus_persica	Prupe.3G076200_v2.0.a1
pyrus_communis	pycom03g05650 pycom03g05660 pycom15g25880 pycom15g25950
rosa_chinensis	RchiOBHm_Chr2g0137181 RchiOBHm_Chr5g0080031
rosa_laevigata	RLG00000019632 RLG00000036847
rosa_multiflora	Rmu_sc0000894.1_g000045
rosa_roxburghii	Rroxscaffold_1G00003110 Rroxscaffold_2G00107410
rosa_rugosa	Rorug05G0467900
rosa_samantha	Rh2AG388000 Rh2BG395800 Rh2CG375300 Rh2DG410800 Rh5AG521400 Rh5CG566900 Rh5DG553500
rosa_wichuraiana	Rw2G031800 Rw5G048390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	654
AccI	GTMKAC	2 cut(s)	233, 635
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	409
AcsI	RAATTY	5 cut(s)	41, 202, 414, 482, 518
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	886
AfaI	GTAC	3 cut(s)	606, 951, 957
AfiI	CCNNNNNNNGG	2 cut(s)	78, 748
AgsI	TTSAA	5 cut(s)	208, 263, 281, 362, 479
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	113, 172, 402, 967
AluI	AGCT	4 cut(s)	113, 172, 402, 967
Alw26I	GTCTC	1 cut(s)	663
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	340, 409, 500, 720
ApeKI	GCWGC	2 cut(s)	62, 273
ApoI	RAATTY	5 cut(s)	41, 202, 414, 482, 518
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	5 cut(s)	586, 731, 763, 798, 872
AvaII	GGWCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	74, 260
BccI	CCATC	3 cut(s)	287, 648, 773
BceAI	ACGGC	1 cut(s)	853
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	2 cut(s)	888, 1006
BcoDI	GTCTC	1 cut(s)	663
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	654
BisI	GCNGC	2 cut(s)	63, 274
BlpI	GCTNAGC	1 cut(s)	798
BlsI	GCNGC	2 cut(s)	64, 275
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	643, 675
Bpu1102I	GCTNAGC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	1 cut(s)	958
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 748
Bse1I	ACTGG	2 cut(s)	356, 381
Bse3DI	GCAATG	1 cut(s)	862
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	784
BseLI	CCNNNNNNNGG	2 cut(s)	78, 748
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	4 cut(s)	210, 641, 674, 789
BseNI	ACTGG	2 cut(s)	356, 381
BseXI	GCAGC	2 cut(s)	74, 260
BshFI	GGCC	4 cut(s)	342, 411, 502, 722
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	2 cut(s)	78, 748
BsmAI	GTCTC	1 cut(s)	663
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	4 cut(s)	342, 411, 502, 722
Bso31I	GGTCTC	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	4, 349, 888, 1006
Bsp1720I	GCTNAGC	1 cut(s)	798
BspANI	GGCC	4 cut(s)	342, 411, 502, 722
BspCNI	CTCAG	4 cut(s)	211, 642, 673, 790
BspHI	TCATGA	1 cut(s)	891
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	957
BspTNI	GGTCTC	1 cut(s)	663
BsrDI	GCAATG	1 cut(s)	862
BsrGI	TGTACA	1 cut(s)	949
BsrI	ACTGG	2 cut(s)	356, 381
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	4, 349, 888, 1006
BssNI	GRCGYC	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	758, 949, 1079
Bst6I	CTCTTC	2 cut(s)	932, 957
BstACI	GRCGYC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	949
BstC8I	GCNNGC	3 cut(s)	255, 504, 832
BstDEI	CTNAG	5 cut(s)	114, 219, 650, 660, 798
BstF5I	GGATG	1 cut(s)	784
BstKTI	GATC	4 cut(s)	7, 352, 891, 1009
BstMAI	GTCTC	1 cut(s)	663
BstMBI	GATC	4 cut(s)	4, 349, 888, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	408, 836, 845
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	74, 260
BstV2I	GAAGAC	1 cut(s)	383
BsuRI	GGCC	4 cut(s)	342, 411, 502, 722
BtsCI	GGATG	1 cut(s)	784
BtsIMutI	CAGTG	2 cut(s)	388, 791
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	3 cut(s)	255, 504, 832
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	307
CseI	GACGC	2 cut(s)	621, 845
Csp6I	GTAC	3 cut(s)	605, 950, 956
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviQI	GTAC	3 cut(s)	605, 950, 956
DdeI	CTNAG	5 cut(s)	114, 219, 650, 660, 798
DpnI	GATC	4 cut(s)	6, 351, 890, 1008
DpnII	GATC	4 cut(s)	4, 349, 888, 1006
DraIII	CACNNNGTG	1 cut(s)	886
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	2 cut(s)	932, 957
EarI	CTCTTC	2 cut(s)	932, 957
Eco130I	CCWWGG	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	722
Eco31I	GGTCTC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaqI	GGGAC	1 cut(s)	711
FbaI	TGATCA	2 cut(s)	888, 1006
FblI	GTMKAC	2 cut(s)	233, 635
Fnu4HI	GCNGC	2 cut(s)	63, 274
FokI	GGATG	1 cut(s)	791
Fsp4HI	GCNGC	2 cut(s)	63, 274
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	2 cut(s)	63, 274
HaeIII	GGCC	4 cut(s)	342, 411, 502, 722
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	2 cut(s)	621, 845
Hin1I	GRCGYC	1 cut(s)	632
HincII	GTYRAC	3 cut(s)	234, 564, 636
HindII	GTYRAC	3 cut(s)	234, 564, 636
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	5 cut(s)	126, 437, 447, 620, 924
HpaI	GTTAAC	1 cut(s)	564
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	5 cut(s)	586, 731, 763, 798, 872
Hpy166II	GTNNAC	4 cut(s)	234, 564, 636, 754
Hpy188I	TCNGA	2 cut(s)	81, 157
Hpy188III	TCNNGA	4 cut(s)	71, 467, 524, 892
Hpy8I	GTNNAC	4 cut(s)	234, 564, 636, 754
Hpy99I	CGWCG	4 cut(s)	29, 637, 839, 977
HpyAV	CCTTC	9 cut(s)	14, 152, 320, 434, 464, 550, 733, 813, 1031
HpyCH4III	ACNGT	3 cut(s)	758, 949, 1079
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	2 cut(s)	240, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	408, 836, 845
HpyF3I	CTNAG	5 cut(s)	114, 219, 650, 660, 798
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	632
Ksp22I	TGATCA	2 cut(s)	888, 1006
KspAI	GTTAAC	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	4, 349, 888, 1006
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	1 cut(s)	852
Lsp1109I	GCAGC	2 cut(s)	74, 260
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	6 cut(s)	89, 383, 512, 574, 1016, 1033
MalI	GATC	4 cut(s)	6, 351, 890, 1008
MboI	GATC	4 cut(s)	4, 349, 888, 1006
MboII	GAAGA	7 cut(s)	275, 344, 388, 411, 728, 919, 974
MfeI	CAATTG	1 cut(s)	918
MlyI	GAGTC	2 cut(s)	456, 918
MnlI	CCTC	5 cut(s)	214, 222, 717, 742, 1036
MseI	TTAA	5 cut(s)	96, 188, 563, 939, 1087
MslI	CAYNNNNRTG	2 cut(s)	491, 597
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	1 cut(s)	213
MunI	CAATTG	1 cut(s)	918
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	3 cut(s)	408, 836, 845
NdeII	GATC	4 cut(s)	4, 349, 888, 1006
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	3 cut(s)	383, 512, 574
NspI	RCATGY	1 cut(s)	240
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	722
PciSI	GCTCTTC	1 cut(s)	957
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	3 cut(s)	126, 437, 620
PkrI	GCNGC	2 cut(s)	64, 275
PleI	GAGTC	2 cut(s)	455, 918
PpsI	GAGTC	2 cut(s)	455, 918
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	3 cut(s)	606, 951, 957
RsaNI	GTAC	3 cut(s)	605, 950, 956
RseI	CAYNNNNRTG	2 cut(s)	491, 597
SalI	GTCGAC	2 cut(s)	232, 634
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	5 cut(s)	96, 188, 563, 939, 1087
SatI	GCNGC	2 cut(s)	63, 274
Sau3AI	GATC	4 cut(s)	4, 349, 888, 1006
Sau96I	GGNCC	1 cut(s)	307
SbfI	CCTGCAGG	1 cut(s)	508
SchI	GAGTC	2 cut(s)	456, 918
ScrFI	CCNGG	1 cut(s)	213
SdaI	CCTGCAGG	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	491, 597
Sse8387I	CCTGCAGG	1 cut(s)	508
SseBI	AGGCCT	1 cut(s)	722
SspMI	CTAG	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	722
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	758, 949, 1079
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	5 cut(s)	18, 233, 450, 635, 972
TatI	WGTACW	1 cut(s)	949
TfiI	GAWTC	3 cut(s)	126, 437, 620
Tru1I	TTAA	5 cut(s)	96, 188, 563, 939, 1087
Tru9I	TTAA	5 cut(s)	96, 188, 563, 939, 1087
TscAI	CASTG	2 cut(s)	388, 791
TseFI	GTSAC	3 cut(s)	383, 512, 574
TseI	GCWGC	2 cut(s)	62, 273
Tsp45I	GTSAC	3 cut(s)	383, 512, 574
TspDTI	ATGAA	4 cut(s)	699, 715, 832, 908
TspRI	CASTG	2 cut(s)	388, 791
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	5 cut(s)	41, 202, 414, 482, 518
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	2 cut(s)	233, 635
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.