pycom15g28310

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014642
Physical Location & Seq
Forward (+)
24116085 .. 24117531
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGGTTGGAGTACCAGCTCTTTCAATATTCATCCTCCTCCTCCTCCTCCTCTTCAACCACCGCTACATCACCACAGCCTTCGCCACAGACTCGCCTGCTTGCAAGCCCACATGTGGATCCCTGCAACTGAGATACCCTTTTGGCACAGGCCCTGGCTGTGGCTCACCAATTTTCCAACCCTACATAACCTGCGCATTTATCAATAATCAGCAGCAGCTCCTCCTCCTCACCACCCACACAGGCTCATACCCTATCACTTCCATTTCCTACGCCACCCAAACCCTAATCCTAAGCCCACCCTCCATGTCCAACTGCACCTCCATGCAACCTTCTTCCTCCAACTTCGGCCTTGACTGGGCCTCCCCATTTCAGCTCGGCCCATCAACTTTCATCCTCTTGTCCTGCCAGACCCCCACCTCTTCCCTCACCCTCAAACCCTCCGGCATCCCCGTCTGTGATCCCTCCTACTCTTACCTTTGTGCTTCTATATATACGTGTCCATCCGTCGTAGGTCTTGGCCTCCCCTTGTTCCCCCCAACAAACACATGCTGTGTGTATTCACCAGGGAATCTTGATGCTAAGGGTGAGTTGGACCTCCACGGGTTAATGTGTGCCTCATTTACATCCGTGGTGTCTCTCGGAGACTACCCGACGGACCCTGTGCGGTGGGAGTATGGGGTGGCGTTGAAGTACAGTCACGGTGGTTTGGACAGTGGCATTGTGGATACAAAGTGCAAGAGCTGTGAGATGAGTGATGGGGTTTGTGGGTATAGGGTTGATGATCAGGATCAGTTTCTTTGTGTGTGTAAGAATGGTTACAACACCTCATCAGATTGCCATAATAATTACACTCCGGATTCGGAACTGCTTTGGGGCTCCGGCGCCTGTGATGATCATTTACCAGTTGCTATTTGGAAAATGTGGTCTGCGCTTGTGGCTGGCTTGATGATCATAATGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

321

Amino Acids

34.37

Weight (kDa)

4.86

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 34 - 97 1.3e-10 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20600
malus_domestica MD01G1032500.v1.1 MD15G1322500.v1.1
prunus_persica Prupe.6G189700_v2.0.a1
pyrus_communis pycom01g05980 pycom15g28310
rosa_chinensis RchiOBHm_Chr2g0113031
rosa_laevigata RLG00000018031
rosa_multiflora Rmu_sc0002351.1_g000105 Rmu_sc0024545.1_g000002
rosa_roxburghii Rroxscaffold_2G00130930
rosa_rugosa Rorug02G0183300
rosa_samantha Rh2AG238500 Rh2BG252300 Rh2CG242500 Rh2DG246500
rosa_wichuraiana Rw2G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 881
AccIII TCCGGA 1 cut(s) 853
AciI CCGC 2 cut(s) 61, 664
AclWI GGATC 4 cut(s) 111, 124, 452, 795
AcyI GRCGYC 1 cut(s) 882
AfaI GTAC 2 cut(s) 12, 692
AfiI CCNNNNNNNGG 3 cut(s) 113, 158, 355
AflIII ACRYGT 2 cut(s) 110, 494
AgsI TTSAA 3 cut(s) 24, 55, 688
AjnI CCWGG 2 cut(s) 151, 562
AluBI AGCT 4 cut(s) 17, 217, 373, 741
AluI AGCT 4 cut(s) 17, 217, 373, 741
Alw26I GTCTC 2 cut(s) 636, 639
AlwI GGATC 4 cut(s) 111, 124, 452, 795
AlwNI CAGNNNCTG 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 853
AoxI GGCC 5 cut(s) 148, 346, 357, 376, 517
ApeKI GCWGC 2 cut(s) 211, 214
AspLEI GCGC 3 cut(s) 194, 884, 931
AspS9I GGNCC 5 cut(s) 149, 357, 377, 592, 655
AsuHPI GGTGA 6 cut(s) 61, 156, 220, 418, 552, 596
AvaII GGWCC 2 cut(s) 592, 655
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 881
BanII GRGCYC 1 cut(s) 878
BbvI GCAGC 2 cut(s) 223, 226
BccI CCATC 3 cut(s) 388, 508, 749
BciT130I CCWGG 2 cut(s) 153, 564
BciVI GTATCC 1 cut(s) 718
BclI TGATCA 3 cut(s) 781, 892, 948
BcoDI GTCTC 2 cut(s) 636, 639
BfoI RGCGCY 1 cut(s) 885
BfuAI ACCTGC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 2 cut(s) 212, 215
BlsI GCNGC 2 cut(s) 213, 216
Bme1390I CCNGG 2 cut(s) 153, 564
Bme18I GGWCC 2 cut(s) 592, 655
BmgT120I GGNCC 5 cut(s) 149, 357, 377, 592, 655
BmiI GGNNCC 4 cut(s) 118, 657, 877, 883
BmrFI CCNGG 2 cut(s) 153, 564
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 453, 565
BmuI ACTGGG 1 cut(s) 364
Bpu10I CCTNAGC 2 cut(s) 290, 579
BsaAI YACGTR 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 882
BsaJI CCNNGG 4 cut(s) 151, 563, 598, 627
BsaWI WCCGGW 1 cut(s) 853
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 158, 355
Bse1I ACTGG 2 cut(s) 359, 902
Bse8I GATNNNNATC 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 853
BseBI CCWGG 2 cut(s) 153, 564
BseDI CCNNGG 4 cut(s) 151, 563, 598, 627
BseGI GGATG 5 cut(s) 30, 390, 444, 500, 623
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 3 cut(s) 113, 158, 355
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 359, 902
BseRI GAGGAG 8 cut(s) 26, 29, 32, 35, 38, 209, 212, 215
BseXI GCAGC 2 cut(s) 223, 226
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 5 cut(s) 150, 348, 359, 378, 519
BshNI GGYRCC 1 cut(s) 881
BsiSI CCGG 3 cut(s) 441, 854, 879
BslI CCNNNNNNNGG 3 cut(s) 113, 158, 355
BsmAI GTCTC 2 cut(s) 636, 639
BsnI GGCC 5 cut(s) 150, 348, 359, 378, 519
Bsp1286I GDGCHC 1 cut(s) 878
Bsp13I TCCGGA 1 cut(s) 853
Bsp143I GATC 6 cut(s) 116, 457, 781, 787, 892, 948
BspACI CCGC 2 cut(s) 61, 664
BspANI GGCC 5 cut(s) 150, 348, 359, 378, 519
BspCNI CTCAG 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 853
BspLI GGNNCC 4 cut(s) 118, 657, 877, 883
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 4 cut(s) 111, 124, 452, 795
BspT107I GGYRCC 1 cut(s) 881
BsrI ACTGG 2 cut(s) 359, 902
BssECI CCNNGG 4 cut(s) 151, 563, 598, 627
BssMI GATC 6 cut(s) 116, 457, 781, 787, 892, 948
BssNI GRCGYC 1 cut(s) 882
Bst2UI CCWGG 2 cut(s) 153, 564
Bst4CI ACNGT 3 cut(s) 695, 701, 713
Bst6I CTCTTC 2 cut(s) 56, 424
BstACI GRCGYC 1 cut(s) 882
BstBAI YACGTR 1 cut(s) 495
BstC8I GCNNGC 4 cut(s) 96, 100, 104, 940
BstDEI CTNAG 3 cut(s) 128, 290, 579
BstDSI CCRYGG 2 cut(s) 598, 627
BstF5I GGATG 5 cut(s) 30, 390, 444, 500, 623
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 3 cut(s) 194, 884, 931
BstKTI GATC 6 cut(s) 119, 460, 784, 790, 895, 951
BstMAI GTCTC 2 cut(s) 636, 639
BstMBI GATC 6 cut(s) 116, 457, 781, 787, 892, 948
BstMWI GCNNNNNNNGC 1 cut(s) 935
BstNI CCWGG 2 cut(s) 153, 564
BstNSI RCATGY 2 cut(s) 114, 549
BstSCI CCNGG 2 cut(s) 151, 562
BstV1I GCAGC 2 cut(s) 223, 226
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 5 cut(s) 150, 348, 359, 378, 519
BtgI CCRYGG 2 cut(s) 598, 627
BtsCI GGATG 5 cut(s) 30, 390, 444, 500, 623
BtsIMutI CAGTG 1 cut(s) 718
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 4 cut(s) 96, 100, 104, 940
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 3 cut(s) 194, 884, 931
Cfr13I GGNCC 5 cut(s) 149, 357, 377, 592, 655
Csp6I GTAC 2 cut(s) 11, 691
CviAII CATG 4 cut(s) 111, 304, 322, 546
CviQI GTAC 2 cut(s) 11, 691
DdeI CTNAG 3 cut(s) 128, 290, 579
DinI GGCGCC 1 cut(s) 883
DpnI GATC 6 cut(s) 118, 459, 783, 789, 894, 950
DpnII GATC 6 cut(s) 116, 457, 781, 787, 892, 948
Eam1104I CTCTTC 2 cut(s) 56, 424
EarI CTCTTC 2 cut(s) 56, 424
Eco24I GRGCYC 1 cut(s) 878
Eco47I GGWCC 2 cut(s) 592, 655
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 151, 562
EcoT38I GRGCYC 1 cut(s) 878
EgeI GGCGCC 1 cut(s) 883
EheI GGCGCC 1 cut(s) 883
FaeI CATG 4 cut(s) 114, 307, 325, 549
FatI CATG 4 cut(s) 110, 303, 321, 545
FbaI TGATCA 3 cut(s) 781, 892, 948
Fnu4HI GCNGC 2 cut(s) 212, 215
FokI GGATG 5 cut(s) 17, 377, 431, 487, 610
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 2 cut(s) 212, 215
FspI TGCGCA 1 cut(s) 193
GlaI GCGC 3 cut(s) 193, 883, 930
GluI GCNGC 2 cut(s) 212, 215
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 5 cut(s) 150, 348, 359, 378, 519
HapII CCGG 3 cut(s) 441, 854, 879
HhaI GCGC 3 cut(s) 194, 884, 931
Hin1I GRCGYC 1 cut(s) 882
Hin1II CATG 4 cut(s) 114, 307, 325, 549
Hin6I GCGC 3 cut(s) 192, 882, 929
HinP1I GCGC 3 cut(s) 192, 882, 929
HinfI GANTC 3 cut(s) 89, 568, 857
HpaII CCGG 3 cut(s) 441, 854, 879
HphI GGTGA 6 cut(s) 61, 156, 220, 418, 552, 596
Hpy188I TCNGA 3 cut(s) 641, 832, 862
Hpy188III TCNNGA 3 cut(s) 572, 785, 854
Hpy99I CGWCG 2 cut(s) 509, 655
HpyAV CCTTC 2 cut(s) 88, 339
HpyCH4III ACNGT 3 cut(s) 695, 701, 713
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 5 cut(s) 102, 124, 315, 325, 735
HpyF10VI GCNNNNNNNGC 1 cut(s) 935
HpyF3I CTNAG 3 cut(s) 128, 290, 579
HpySE526I ACGT 1 cut(s) 494
Hsp92I GRCGYC 1 cut(s) 882
Hsp92II CATG 4 cut(s) 114, 307, 325, 549
HspAI GCGC 3 cut(s) 192, 882, 929
KasI GGCGCC 1 cut(s) 881
Kpn2I TCCGGA 1 cut(s) 853
Ksp22I TGATCA 3 cut(s) 781, 892, 948
Kzo9I GATC 6 cut(s) 116, 457, 781, 787, 892, 948
LmnI GCTCC 2 cut(s) 222, 881
Lsp1109I GCAGC 2 cut(s) 223, 226
LweI GCATC 2 cut(s) 453, 565
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 695, 815
MalI GATC 6 cut(s) 118, 459, 783, 789, 894, 950
MboI GATC 6 cut(s) 116, 457, 781, 787, 892, 948
MboII GAAGA 3 cut(s) 43, 324, 411
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 2 cut(s) 168, 844
Mly113I GGCGCC 1 cut(s) 882
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 4 cut(s) 199, 333, 363, 570
MroI TCCGGA 1 cut(s) 853
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 3 cut(s) 441, 854, 879
MspR9I CCNGG 2 cut(s) 153, 564
MvaI CCWGG 2 cut(s) 153, 564
MwoI GCNNNNNNNGC 1 cut(s) 935
NarI GGCGCC 1 cut(s) 882
NdeII GATC 6 cut(s) 116, 457, 781, 787, 892, 948
NlaIII CATG 4 cut(s) 114, 307, 325, 549
NlaIV GGNNCC 4 cut(s) 118, 657, 877, 883
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 695
NsbI TGCGCA 1 cut(s) 193
NspI RCATGY 2 cut(s) 114, 549
PciI ACATGT 1 cut(s) 110
PfeI GAWTC 2 cut(s) 568, 857
PkrI GCNGC 2 cut(s) 213, 216
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 885
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 495
PscI ACATGT 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 151, 562
PspGI CCWGG 2 cut(s) 151, 562
PspN4I GGNNCC 4 cut(s) 118, 657, 877, 883
PspPI GGNCC 5 cut(s) 149, 357, 377, 592, 655
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 2 cut(s) 12, 692
RsaNI GTAC 2 cut(s) 11, 691
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 2 cut(s) 212, 215
Sau3AI GATC 6 cut(s) 116, 457, 781, 787, 892, 948
Sau96I GGNCC 5 cut(s) 149, 357, 377, 592, 655
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 153, 564
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 2 cut(s) 453, 565
SfoI GGCGCC 1 cut(s) 883
SinI GGWCC 2 cut(s) 592, 655
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 168, 844
SsiI CCGC 2 cut(s) 61, 664
SspDI GGCGCC 1 cut(s) 881
SspI AATATT 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 151, 562
TaaI ACNGT 3 cut(s) 695, 701, 713
TaiI ACGT 1 cut(s) 497
TasI AATT 2 cut(s) 168, 844
TatI WGTACW 1 cut(s) 690
TfiI GAWTC 2 cut(s) 568, 857
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 1 cut(s) 718
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 2 cut(s) 211, 214
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 2 cut(s) 19, 379
TspGWI ACGGA 3 cut(s) 493, 616, 668
TspRI CASTG 1 cut(s) 718
VpaK11BI GGWCC 2 cut(s) 592, 655
XceI RCATGY 2 cut(s) 114, 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.