pycom15g28590

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
24647338 .. 24647682
345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGAGGACAGTGATGCAAGATAAGGAATCACCAAGTGGCGATAACTCTGAACAGGAGAGGAACCACTCATCAACAGATGCAGAGATTAAAAATCTTAAAGCAGAACTTGAGAATGTAAAAGTAACGATGGCAGAGCTGCAGAGGGACTATTCTGAACTGCAACGCGAGTATGAAAGGATAATAAGCAAAAAGCAAAAGAATGTATCAGGTTGGAGTTTGGGATGGAGAAAAATTAAGAACTCTTTCCATACAAAAGTTGAGGAAAATGAAACTGGAAACAACCAACAAAGAACCAACCCATCTAGACGCAGAACCACCTCCATACAAAGGTCGTCAATGTCCTAA

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

9.52

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 21
BbvI GCAGC 1 cut(s) 123
BccI CCATC 3 cut(s) 121, 216, 307
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 62
BmsI GCATC 2 cut(s) 3, 67
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 158
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 62
BspMAI CTGCAG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 10
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 137
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 15
CseI GACGC 1 cut(s) 315
CviJI RGCY 1 cut(s) 136
CviKI_1 RGCY 1 cut(s) 136
DraIII CACNNNGTG 1 cut(s) 35
FaiI YATR 3 cut(s) 171, 249, 323
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FaqI GGGAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 137
HgaI GACGC 1 cut(s) 315
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 21
Hpy188I TCNGA 2 cut(s) 49, 154
Hpy188III TCNNGA 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 4 cut(s) 16, 80, 139, 160
LpnPI CCDG 3 cut(s) 38, 192, 258
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 2 cut(s) 3, 67
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 121
MluCI AATT 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 4 cut(s) 51, 135, 253, 328
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 3 cut(s) 87, 96, 234
MvnI CGCG 1 cut(s) 165
NlaIV GGNNCC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 141
SaqAI TTAA 3 cut(s) 87, 96, 234
SatI GCNGC 1 cut(s) 137
SetI ASST 4 cut(s) 138, 211, 320, 332
SfaNI GCATC 2 cut(s) 3, 67
SfcI CTRYAG 1 cut(s) 137
SgeI CNNG 9 cut(s) 29, 45, 65, 119, 176, 178, 219, 285, 315
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 10
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 87, 96, 234
Tru9I TTAA 3 cut(s) 87, 96, 234
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 186, 282
TspRI CASTG 1 cut(s) 15
XbaI TCTAGA 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.