Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003124

Physical Location & Seq

Genomic Coordinates Reverse (-)

26013753 .. 26021198

Gene Structure 7446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTGGAAGAGTACACTGGGTTGCATGTGCAGCCACACAAGGCTATTGTTGGAGCTAATGCTTTTGCACATGAAAGTGGTATCCATCAGGATGGAATGCTTAAGCACAAAGGTACATATGAAATCATATCTCCTGAAGATATTGGGTATGAACGGTCCAATGAAGCTGGTATTGTTCTTGGGAAACTCAGTGGGCGTCATGCTTTGAGAAATCGACTTGCGGAGCTTGGCTATGAGCTTGAGGATGATCAACTTGCTACTGTGTTTGAGCATTTCAAAGCTGTAGCCGAACAGAAAAAGATTATAACTGATGCAGATCTCGGAGCACTGGTGCGAGATGAAGTTTTTCAGCCAGAAGTTGTCTGGAAGCTTCATGATTTACAGGTTACCTGTGGAACTCTTGGTCTTTCTACAGCAACTGTTAAACTAATTGATGCTGATGGGAGAGAGCATGTGGCATGTTCAGTTGGAACGGGTCCAGTAGATTCGGCTTACAAGGCTGTTGATCTCATCGTGAAGGAACCTGTAACGCTTGTTGAGTACTCTATGAATGCGGTCACAGAAGGAAATGATGCAATAGCAACTACTCGTGTTGTAATCCGACCAGAAAACAAACGTATGATTACTCATGCTCACACTGGAGAATCAGTTCAACGGACATTCAGTGGAGTTGCAGCAGGAATGGATATTGTTGTCTCTAGTGTCAAGGCATACATCGGCGCGTTGAATAAGATGATAGGTTTCAATGAAAGGTCGCCGACAAAGATTCCAGCGGAACGAACGCCAGTGTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003852 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016746 GO:0019752 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046912 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00620 ko01100 ko01110 ko01210 ko01230 map00290 map00620 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

HMGL-like LeuA_dimer

Protein Analysis

266

Amino Acids

28.73

Weight (kDa)

5.66

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCS_D2	PF22617	16 - 100	6.3e-30	Homocitrate synthase post-HMGL domain-like
LeuA_dimer	PF08502	102 - 245	1.4e-31	LeuA allosteric (dimerisation) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18500 AT1G74040 AT1G74040 AT1G74040
fragaria_vesca	FvH4_1g22410 FvH4_1g22460 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570 FvH4_1g22570
malus_domestica	MD01G1019700.v1.1 MD15G1332600.v1.1
prunus_persica	Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1 Prupe.6G172500_v2.0.a1
pyrus_communis	pycom01g04920 pycom15g29280
rosa_chinensis	RchiOBHm_Chr2g0116551 RchiOBHm_Chr2g0116561
rosa_laevigata	RLG00000018287 RLG00000018288
rosa_multiflora	Rmu_sc0001287.1_g000019 Rmu_sc0004191.1_g000022 Rmu_sc0004191.1_g000030
rosa_roxburghii	Rroxscaffold_2G00127060 Rroxscaffold_2G00127070
rosa_rugosa	Rorug02G0207600
rosa_samantha	Rh2AG262500 Rh2AG262600 Rh2BG274100 Rh2BG274400 Rh2DG270700 Rh2DG270800 Rh2DG289200 Rh2DG289300
rosa_wichuraiana	Rw2G020670 Rw2G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccII	CGCG	1 cut(s)	722
AciI	CCGC	3 cut(s)	221, 554, 773
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	3 cut(s)	14, 115, 542
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	277, 653, 727, 745
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	56, 167, 226, 238, 281, 370
AluI	AGCT	6 cut(s)	56, 167, 226, 238, 281, 370
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	700
AlwNI	CAGNNNCTG	2 cut(s)	419, 791
ApeKI	GCWGC	2 cut(s)	31, 674
Asp700I	GAANNNNTTC	2 cut(s)	345, 648
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	2 cut(s)	156, 476
AvaII	GGWCC	2 cut(s)	156, 476
BauI	CACGAG	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	43, 686
BccI	CCATC	3 cut(s)	86, 93, 434
BciVI	GTATCC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	282, 411
BfrI	CTTAAG	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	2 cut(s)	32, 675
BlsI	GCNGC	2 cut(s)	33, 676
BmcAI	AGTACT	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	156, 476
BmgT120I	GGNCC	2 cut(s)	156, 476
BmiI	GGNNCC	2 cut(s)	477, 522
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	3 cut(s)	301, 424, 562
BmuI	ACTGGG	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	196
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 633, 663
Bse1I	ACTGG	5 cut(s)	22, 333, 479, 643, 785
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	2 cut(s)	97, 250
BseJI	GATNNNNATC	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	5 cut(s)	22, 333, 479, 643, 785
BseXI	GCAGC	2 cut(s)	43, 686
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	328
BsmAI	GTCTC	1 cut(s)	700
BsmI	GAATGC	2 cut(s)	102, 556
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	247, 316, 505
BspACI	CCGC	3 cut(s)	221, 554, 773
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	477, 522
BspTI	CTTAAG	1 cut(s)	101
BsrI	ACTGG	5 cut(s)	22, 333, 479, 643, 785
BssMI	GATC	3 cut(s)	247, 316, 505
BssNI	GRCGYC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	156, 262, 421
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	196
BstAFI	CTTAAG	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	97, 250
BstFNI	CGCG	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	3 cut(s)	250, 319, 508
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	3 cut(s)	247, 316, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 497
BstNSI	RCATGY	3 cut(s)	29, 455, 462
BstPI	GGTNACC	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	282, 411
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	2 cut(s)	43, 686
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	316
BsuI	GTATCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	97, 250
BtsIMutI	CAGTG	6 cut(s)	15, 196, 326, 636, 670, 792
CaiI	CAGNNNCTG	2 cut(s)	419, 791
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	2 cut(s)	156, 476
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	13, 114, 541
CviAII	CATG	8 cut(s)	26, 71, 200, 374, 452, 459, 629, 795
CviQI	GTAC	3 cut(s)	13, 114, 541
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	249, 318, 507
DpnII	GATC	3 cut(s)	247, 316, 505
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	156, 476
Eco57I	CTGAAG	1 cut(s)	156
Eco91I	GGTNACC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	385
FaeI	CATG	8 cut(s)	29, 74, 203, 377, 455, 462, 632, 798
FatI	CATG	8 cut(s)	25, 70, 199, 373, 451, 458, 628, 794
FauNDI	CATATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	32, 675
FokI	GGATG	2 cut(s)	104, 257
Fsp4HI	GCNGC	2 cut(s)	32, 675
FspBI	CTAG	1 cut(s)	699
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	2 cut(s)	32, 675
GsuI	CTGGAG	1 cut(s)	660
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	8 cut(s)	29, 74, 203, 377, 455, 462, 632, 798
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	485, 644, 766
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	323, 602
Hpy188III	TCNNGA	5 cut(s)	89, 134, 364, 374, 514
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	511, 557
HpyCH4III	ACNGT	3 cut(s)	156, 262, 421
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	7 cut(s)	25, 31, 68, 314, 575, 674, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 497
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	616
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	8 cut(s)	29, 74, 203, 377, 455, 462, 632, 798
HspAI	GCGC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	247, 316, 505
LmnI	GCTCC	3 cut(s)	53, 223, 323
Lsp1109I	GCAGC	2 cut(s)	43, 686
LweI	GCATC	3 cut(s)	301, 424, 562
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	3 cut(s)	385, 526, 556
MalI	GATC	3 cut(s)	249, 318, 507
MboI	GATC	3 cut(s)	247, 316, 505
MboII	GAAGA	2 cut(s)	20, 149
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	1 cut(s)	429
MmeI	TCCRAC	3 cut(s)	31, 448, 625
MnlI	CCTC	1 cut(s)	235
MroXI	GAANNNNTTC	2 cut(s)	345, 648
MseI	TTAA	2 cut(s)	102, 423
MslI	CAYNNNNRTG	2 cut(s)	75, 90
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	101
Mva1269I	GAATGC	2 cut(s)	102, 556
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	2 cut(s)	31, 497
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	3 cut(s)	247, 316, 505
NlaIII	CATG	8 cut(s)	29, 74, 203, 377, 455, 462, 632, 798
NlaIV	GGNNCC	2 cut(s)	477, 522
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	3 cut(s)	29, 455, 462
PagI	TCATGA	1 cut(s)	373
PctI	GAATGC	2 cut(s)	102, 556
PdmI	GAANNNNTTC	2 cut(s)	345, 648
PfeI	GAWTC	3 cut(s)	485, 644, 766
PkrI	GCNGC	2 cut(s)	33, 676
PsiI	TTATAA	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	477, 522
PspPI	GGNCC	2 cut(s)	156, 476
PstNI	CAGNNNCTG	2 cut(s)	419, 791
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	3 cut(s)	14, 115, 542
RsaNI	GTAC	3 cut(s)	13, 114, 541
RseI	CAYNNNNRTG	2 cut(s)	75, 90
SaqAI	TTAA	2 cut(s)	102, 423
SatI	GCNGC	2 cut(s)	32, 675
Sau3AI	GATC	3 cut(s)	247, 316, 505
Sau96I	GGNCC	2 cut(s)	156, 476
ScaI	AGTACT	1 cut(s)	542
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	3 cut(s)	301, 424, 562
SfcI	CTRYAG	2 cut(s)	282, 411
SinI	GGWCC	2 cut(s)	156, 476
SmiMI	CAYNNNNRTG	2 cut(s)	75, 90
SmlI	CTYRAG	2 cut(s)	101, 239
SmoI	CTYRAG	2 cut(s)	101, 239
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	3 cut(s)	221, 554, 773
SspMI	CTAG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	156, 262, 421
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	429
TatI	WGTACW	2 cut(s)	12, 540
TfiI	GAWTC	3 cut(s)	485, 644, 766
Tru1I	TTAA	2 cut(s)	102, 423
Tru9I	TTAA	2 cut(s)	102, 423
TscAI	CASTG	6 cut(s)	22, 196, 333, 643, 670, 792
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	31, 674
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	8 cut(s)	87, 135, 165, 177, 354, 362, 563, 762
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	6 cut(s)	22, 196, 333, 643, 670, 792
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	156, 476
XceI	RCATGY	3 cut(s)	29, 455, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	360
XmnI	GAANNNNTTC	2 cut(s)	345, 648
XspI	CTAG	1 cut(s)	699
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.