Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

31918934 .. 31921363

Gene Structure 2430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTTAAAAGATACTTTAAAGTGGAGGTCAGAATACAAACCAGAAGAGATTCCTTGGAAAGAGGTAGCTCGTGAAGCAGAAACAGGGAAGATTTACAGATCAAATTATTTTGACAAGCAAGGGAGACCAGTTCTTGTTATGAGACCACGTTGTCAGAACTCAAAGTCAACGAAAGGACAGATTAAATATTTGGTATATTGCATGGAGAATGCCGTTTTAAATCTTCCGCCAGGTCAGGAACAGATGGTTTGGATGATAGACTTTGAAGGTTTCAATATGTCACATATTTCAGTGAAGTTGACACGGGAAACTGCACATGTTTTACAAAACCGTTATCCAGAACGCCTAGGTCTTGCAATACTGTACAATCCACCCAAGTTTTTTGAACCATTCTTTTCGATGGTAAAGCCTTTTCTAGAGCCAAAGACTTACAACAAAGTCAGGTTTGTTTACTCGGATGATGTTAACACCAAGAAGATAATGGAGGATCTGTTTGACATGAATAAACTGGAGGCTGCATTCGGGGGAAACGATACTTGTGGTTTTGATATAAATAAATACGCCGAAAGGATGAAAGAGGATGACAAGAAGATGCCCACAATGTGGACGAGAGGAAACCCTTCTTTGGCTGCTTCCAAACCTGCCGTTACCGGTGCTGCTCTTTCATTGGATTCTCTCAAGTTAGAACCAGATTCCGATGCTTCTGATAATGAGAAAACAGACGGCTCTTCATCCCAGGGGATAGAACCAGAAGTTGCCTCAGACCACGATGAGCCGGTGGCTGCTAGTACTGGAAATGCTACCCAAGGTGTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

5.73

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	27 - 176	7.3e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	41 - 152	2.5e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	603
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	3 cut(s)	365, 790, 813
AfiI	CCNNNNNNNGG	2 cut(s)	603, 625
AflIII	ACRYGT	1 cut(s)	316
AgeI	ACCGGT	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	266, 274, 386
AjnI	CCWGG	2 cut(s)	229, 735
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	118, 136
AlwI	GGATC	1 cut(s)	495
ApeKI	GCWGC	4 cut(s)	515, 629, 656, 782
AsiGI	ACCGGT	1 cut(s)	650
Asp700I	GAANNNNTTC	2 cut(s)	48, 619
AspA2I	CCTAGG	1 cut(s)	346
AvrII	CCTAGG	1 cut(s)	346
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	502, 616, 643, 769
BccI	CCATC	2 cut(s)	238, 394
BceAI	ACGGC	3 cut(s)	197, 629, 739
BciT130I	CCWGG	2 cut(s)	231, 737
BcoDI	GTCTC	2 cut(s)	118, 136
BfaI	CTAG	3 cut(s)	347, 416, 786
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	516, 630, 657, 783
BlnI	CCTAGG	1 cut(s)	346
BlsI	GCNGC	4 cut(s)	517, 631, 658, 784
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	2 cut(s)	231, 737
BmrFI	CCNGG	2 cut(s)	231, 737
BmsI	GCATC	2 cut(s)	582, 688
BpmI	CTGGAG	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	662
BsaI	GGTCTC	2 cut(s)	118, 136
BsaJI	CCNNGG	5 cut(s)	53, 346, 735, 736, 805
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 625
Bse118I	RCCGGY	2 cut(s)	650, 775
Bse1I	ACTGG	3 cut(s)	128, 513, 796
BseBI	CCWGG	2 cut(s)	231, 737
BseDI	CCNNGG	5 cut(s)	53, 346, 735, 736, 805
BseGI	GGATG	5 cut(s)	258, 463, 576, 586, 731
BseLI	CCNNNNNNNGG	2 cut(s)	603, 625
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	3 cut(s)	128, 513, 796
BseXI	GCAGC	4 cut(s)	502, 616, 643, 769
BsgI	GTGCAG	1 cut(s)	297
BshTI	ACCGGT	1 cut(s)	650
BsiSI	CCGG	2 cut(s)	651, 776
BslI	CCNNNNNNNGG	2 cut(s)	603, 625
BsmAI	GTCTC	2 cut(s)	118, 136
BsmI	GAATGC	2 cut(s)	214, 518
Bso31I	GGTCTC	2 cut(s)	118, 136
Bsp1407I	TGTACA	2 cut(s)	363, 811
Bsp143I	GATC	2 cut(s)	98, 487
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	773
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	733
BspTNI	GGTCTC	2 cut(s)	118, 136
BsrFI	RCCGGY	2 cut(s)	650, 775
BsrGI	TGTACA	2 cut(s)	363, 811
BsrI	ACTGG	3 cut(s)	128, 513, 796
BssAI	RCCGGY	2 cut(s)	650, 775
BssECI	CCNNGG	5 cut(s)	53, 346, 735, 736, 805
BssMI	GATC	2 cut(s)	98, 487
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	3 cut(s)	53, 346, 805
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	231, 737
Bst4CI	ACNGT	2 cut(s)	332, 363
Bst6I	CTCTTC	2 cut(s)	39, 733
BstAUI	TGTACA	2 cut(s)	363, 811
BstDEI	CTNAG	1 cut(s)	760
BstF5I	GGATG	5 cut(s)	258, 463, 576, 586, 731
BstKTI	GATC	2 cut(s)	101, 490
BstMAI	GTCTC	2 cut(s)	118, 136
BstMBI	GATC	2 cut(s)	98, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	231, 737
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	2 cut(s)	229, 735
BstV1I	GCAGC	4 cut(s)	502, 616, 643, 769
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	5 cut(s)	258, 463, 576, 586, 731
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	649
Cfr10I	RCCGGY	2 cut(s)	650, 775
Csp6I	GTAC	3 cut(s)	364, 789, 812
CspAI	ACCGGT	1 cut(s)	650
CviAII	CATG	3 cut(s)	202, 317, 499
CviJI	RGCY	8 cut(s)	68, 409, 421, 515, 629, 726, 775, 782
CviKI_1	RGCY	8 cut(s)	68, 409, 421, 515, 629, 726, 775, 782
CviQI	GTAC	3 cut(s)	364, 789, 812
DdeI	CTNAG	1 cut(s)	760
DpnI	GATC	2 cut(s)	100, 489
DpnII	GATC	2 cut(s)	98, 487
DraI	TTTAAA	2 cut(s)	18, 219
DraIII	CACNNNGTG	1 cut(s)	603
DrdI	GACNNNNNNGTC	1 cut(s)	150
DseDI	GACNNNNNNGTC	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	39, 733
EarI	CTCTTC	2 cut(s)	39, 733
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	3 cut(s)	53, 346, 805
Eco31I	GGTCTC	2 cut(s)	118, 136
EcoRII	CCWGG	2 cut(s)	229, 735
EcoT14I	CCWWGG	3 cut(s)	53, 346, 805
ErhI	CCWWGG	3 cut(s)	53, 346, 805
FaeI	CATG	3 cut(s)	205, 320, 502
FaiI	YATR	8 cut(s)	140, 196, 203, 278, 285, 318, 500, 551
FatI	CATG	3 cut(s)	201, 316, 498
Fnu4HI	GCNGC	4 cut(s)	516, 630, 657, 783
FokI	GGATG	5 cut(s)	265, 470, 583, 593, 718
Fsp4HI	GCNGC	4 cut(s)	516, 630, 657, 783
FspBI	CTAG	3 cut(s)	347, 416, 786
GluI	GCNGC	4 cut(s)	516, 630, 657, 783
GsuI	CTGGAG	1 cut(s)	530
HapII	CCGG	2 cut(s)	651, 776
Hin1II	CATG	3 cut(s)	205, 320, 502
HincII	GTYRAC	3 cut(s)	168, 300, 466
HindII	GTYRAC	3 cut(s)	168, 300, 466
HinfI	GANTC	3 cut(s)	49, 671, 692
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	2 cut(s)	651, 776
Hpy166II	GTNNAC	6 cut(s)	168, 300, 451, 466, 606, 812
Hpy188I	TCNGA	6 cut(s)	31, 156, 457, 697, 706, 763
Hpy188III	TCNNGA	4 cut(s)	71, 236, 338, 416
Hpy8I	GTNNAC	6 cut(s)	168, 300, 451, 466, 606, 812
HpyAV	CCTTC	2 cut(s)	260, 630
HpyCH4III	ACNGT	2 cut(s)	332, 363
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	201, 314, 356, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	760
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	205, 320, 502
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	98, 487
LguI	GCTCTTC	1 cut(s)	733
Lsp1109I	GCAGC	4 cut(s)	502, 616, 643, 769
LweI	GCATC	2 cut(s)	582, 688
MaeI	CTAG	3 cut(s)	347, 416, 786
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	279, 646
MalI	GATC	2 cut(s)	100, 489
MboI	GATC	2 cut(s)	98, 487
MboII	GAAGA	6 cut(s)	56, 100, 215, 487, 601, 720
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	7 cut(s)	18, 55, 478, 505, 571, 605, 769
MroXI	GAANNNNTTC	2 cut(s)	48, 619
MseI	TTAA	6 cut(s)	5, 17, 183, 218, 465, 817
MspI	CCGG	2 cut(s)	651, 776
MspR9I	CCNGG	2 cut(s)	231, 737
Mva1269I	GAATGC	2 cut(s)	214, 518
MvaI	CCWGG	2 cut(s)	231, 737
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	2 cut(s)	98, 487
NlaIII	CATG	3 cut(s)	205, 320, 502
NmuCI	GTSAC	1 cut(s)	279
NspI	RCATGY	1 cut(s)	320
PasI	CCCWGGG	1 cut(s)	736
PciI	ACATGT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	2 cut(s)	214, 518
PdmI	GAANNNNTTC	2 cut(s)	48, 619
PfeI	GAWTC	3 cut(s)	49, 671, 692
PflMI	CCANNNNNTGG	1 cut(s)	603
PinAI	ACCGGT	1 cut(s)	650
PkrI	GCNGC	4 cut(s)	517, 631, 658, 784
PscI	ACATGT	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	229, 735
PspGI	CCWGG	2 cut(s)	229, 735
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	3 cut(s)	365, 790, 813
RsaNI	GTAC	3 cut(s)	364, 789, 812
SapI	GCTCTTC	1 cut(s)	733
SaqAI	TTAA	6 cut(s)	5, 17, 183, 218, 465, 817
SatI	GCNGC	4 cut(s)	516, 630, 657, 783
Sau3AI	GATC	2 cut(s)	98, 487
ScaI	AGTACT	1 cut(s)	790
ScrFI	CCNGG	2 cut(s)	231, 737
SfaNI	GCATC	2 cut(s)	582, 688
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	3 cut(s)	347, 416, 786
StyD4I	CCNGG	2 cut(s)	229, 735
StyI	CCWWGG	3 cut(s)	53, 346, 805
TaaI	ACNGT	2 cut(s)	332, 363
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	398
TasI	AATT	1 cut(s)	103
TatI	WGTACW	3 cut(s)	363, 788, 811
TfiI	GAWTC	3 cut(s)	49, 671, 692
Tru1I	TTAA	6 cut(s)	5, 17, 183, 218, 465, 817
Tru9I	TTAA	6 cut(s)	5, 17, 183, 218, 465, 817
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	4 cut(s)	515, 629, 656, 782
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	4 cut(s)	515, 587, 654, 720
TspRI	CASTG	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	603
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	1 cut(s)	320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	346
XmnI	GAANNNNTTC	2 cut(s)	48, 619
XspI	CTAG	3 cut(s)	347, 416, 786
ZrmI	AGTACT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.