Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003643

Physical Location & Seq

Genomic Coordinates Forward (+)

33679560 .. 33681492

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGTCATTGGCACGCAAAACCAGAATAATGACACGTGTCATCTTCCTTACCCAATTTGGGTTAGTTACCCAATCACTCACTTCCAATCCCATTTCGAACGCGTCCACCTCTTTCTACAACCCTCTCTCCAATGTCTCCTTCCAGGCCTTTCTTCAACCAGTTCTGAGCCCTGCAATTCATGCGTTTTGTTCGAACCCCAGCGGCGCAGCGGGAGTTGGGTCTGTAGGCGCAGTACCCAGCATGCAGAATCCGGAGGATATATCCTACCTGACGCAGCGTGAAGCTGCTGAGATCGATGAGATCCTCATGGGTCCTCTCGGCTTCAGCGTCGACCAGTTAATGGAATTGGCTGGTTTGAGCGTGGCCACTTCCATTGCAGAGGTCTATAAACCAAGTGAGTATAATCGAGTCCTTGTGATTTGTGGCCCTGGAAACAATGGTGGTGATGGTCTCGTGGCTGCTCGTCACCTGTATCACTTTGGTTATAAGCTGTCTGTTTGTTATCCAAAGCGTACTGCTAAGCCTCTTTATGCTGGTCTTGTTACGCAACTGGAATCACTGTCAGTCCCCTTCATCTCAGTGGAAGATCTGCCGTTGGACTTGTCAAAGGACTTTGACATTATTGTAGATGCAATGTTCGGTTTCTCATTCCATGGTTCCCCAAGGCCTCCCTTTGATAACCTGATCCAAAAGCTTGTTTGTGTAAATAAATATCGATCAAACTCGCGAAAAGTCTTCTGTTATTGTCTCCGTAGATATTCCATCTGGGTGGCATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004733 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006081 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006739 GO:0006753 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0016491 GO:0016638 GO:0016641 GO:0016853 GO:0016854 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0031974 GO:0031981 GO:0034356 GO:0034641 GO:0034654 GO:0042364 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046184 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0052856 GO:0052857 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 ko01120 map00750 map01100 map01120

Pfam Domains

Protein Families

PNP_phzG_C Putative_PNPOx YjeF_N

Protein Analysis

261

Amino Acids

28.48

Weight (kDa)

8.13

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YjeF_N	PF03853	112 - 233	3.2e-25	YjeF-related protein N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49970 AT5G49970
fragaria_vesca	FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940 FvH4_5g35940
malus_domestica	MD08G1191800.v1.1 MD15G1380600.v1.1
prunus_persica	Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1 Prupe.1G526800_v2.0.a1
pyrus_communis	pycom08g16530 pycom15g34090
rosa_chinensis	RchiOBHm_Chr7g0237681
rosa_laevigata	RLG00000000977
rosa_multiflora	Rmu_co8471315.1_g000001 Rmu_sc0007826.1_g000003
rosa_roxburghii	Rroxscaffold_3G00223890
rosa_rugosa	Rorug07G0306200 Rorug07G0306300 Rorug07G0306400 Rorug07G0306500
rosa_samantha	Rh7AG462900 Rh7BG433000 Rh7CG479900 Rh7DG448900
rosa_wichuraiana	Rw7G038290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	2 cut(s)	104, 730
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	2 cut(s)	204, 212
AclWI	GGATC	2 cut(s)	298, 682
AcoI	YGGCCR	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	310
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	237, 517
AfiI	CCNNNNNNNGG	2 cut(s)	60, 343
AflIII	ACRYGT	3 cut(s)	35, 37, 102
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	144, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	287, 493, 697
AluI	AGCT	3 cut(s)	287, 493, 697
Alw26I	GTCTC	3 cut(s)	142, 458, 755
AlwI	GGATC	2 cut(s)	298, 682
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	4 cut(s)	147, 366, 427, 668
ApeKI	GCWGC	4 cut(s)	209, 277, 287, 461
AspLEI	GCGC	2 cut(s)	209, 233
AspS9I	GGNCC	2 cut(s)	314, 428
AsuHPI	GGTGA	2 cut(s)	458, 461
AsuII	TTCGAA	2 cut(s)	98, 194
AvaII	GGWCC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	455
BbrPI	CACGTG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	730
BbvI	GCAGC	4 cut(s)	221, 274, 289, 448
BccI	CCATC	2 cut(s)	443, 773
BceAI	ACGGC	1 cut(s)	580
BciT130I	CCWGG	2 cut(s)	146, 432
BcoDI	GTCTC	3 cut(s)	142, 458, 755
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	5 cut(s)	205, 210, 278, 288, 462
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	5 cut(s)	206, 211, 279, 289, 463
Bme1390I	CCNGG	2 cut(s)	146, 432
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	314, 428
BmiI	GGNNCC	2 cut(s)	315, 661
BmrFI	CCNGG	2 cut(s)	146, 432
BmsI	GCATC	1 cut(s)	622
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	730
Bpu1102I	GCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	2 cut(s)	98, 194
Bsa29I	ATCGAT	2 cut(s)	297, 718
BsaAI	YACGTR	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	430, 655, 665
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 343
Bse1I	ACTGG	3 cut(s)	161, 337, 558
Bse3DI	GCAATG	2 cut(s)	375, 642
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	146, 432
BseCI	ATCGAT	2 cut(s)	297, 718
BseDI	CCNNGG	3 cut(s)	430, 655, 665
BseLI	CCNNNNNNNGG	2 cut(s)	60, 343
BseMI	GCAATG	2 cut(s)	375, 642
BseMII	CTCAG	3 cut(s)	158, 282, 594
BseNI	ACTGG	3 cut(s)	161, 337, 558
BseXI	GCAGC	4 cut(s)	221, 274, 289, 448
BseYI	CCCAGC	2 cut(s)	200, 239
Bsh1236I	CGCG	2 cut(s)	104, 730
BshFI	GGCC	4 cut(s)	149, 368, 429, 670
BshVI	ATCGAT	2 cut(s)	297, 718
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	60, 343
BsmAI	GTCTC	3 cut(s)	142, 458, 755
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	4 cut(s)	149, 368, 429, 670
Bso31I	GGTCTC	1 cut(s)	458
Bsp119I	TTCGAA	2 cut(s)	98, 194
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	5 cut(s)	294, 303, 589, 687, 719
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	655
Bsp68I	TCGCGA	1 cut(s)	730
BspACI	CCGC	2 cut(s)	204, 212
BspANI	GGCC	4 cut(s)	149, 368, 429, 670
BspCNI	CTCAG	3 cut(s)	159, 283, 593
BspDI	ATCGAT	2 cut(s)	297, 718
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	104, 730
BspLI	GGNNCC	2 cut(s)	315, 661
BspPI	GGATC	2 cut(s)	298, 682
BspT104I	TTCGAA	2 cut(s)	98, 194
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	375, 642
BsrI	ACTGG	3 cut(s)	161, 337, 558
BssECI	CCNNGG	3 cut(s)	430, 655, 665
BssMI	GATC	5 cut(s)	294, 303, 589, 687, 719
BssSI	CACGAG	1 cut(s)	455
BssT1I	CCWWGG	2 cut(s)	655, 665
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	146, 432
Bst4CI	ACNGT	1 cut(s)	564
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	38
BstBI	TTCGAA	2 cut(s)	98, 194
BstC8I	GCNNGC	2 cut(s)	16, 245
BstDEI	CTNAG	4 cut(s)	167, 291, 522, 580
BstDSI	CCRYGG	1 cut(s)	655
BstFNI	CGCG	2 cut(s)	104, 730
BstHHI	GCGC	2 cut(s)	209, 233
BstKTI	GATC	5 cut(s)	297, 306, 592, 690, 722
BstMAI	GTCTC	3 cut(s)	142, 458, 755
BstMBI	GATC	5 cut(s)	294, 303, 589, 687, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	2 cut(s)	146, 432
BstNSI	RCATGY	2 cut(s)	247, 780
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	144, 430
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	104, 730
BstV1I	GCAGC	4 cut(s)	221, 274, 289, 448
BstV2I	GAAGAC	1 cut(s)	730
BstX2I	RGATCY	2 cut(s)	303, 589
BstXI	CCANNNNNNTGG	1 cut(s)	772
BstYI	RGATCY	2 cut(s)	303, 589
Bsu15I	ATCGAT	2 cut(s)	297, 718
BsuRI	GGCC	4 cut(s)	149, 368, 429, 670
BsuTUI	ATCGAT	2 cut(s)	297, 718
BtgI	CCRYGG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	560, 588
BtuMI	TCGCGA	1 cut(s)	730
Cac8I	GCNNGC	2 cut(s)	16, 245
CfoI	GCGC	2 cut(s)	209, 233
Cfr13I	GGNCC	2 cut(s)	314, 428
ClaI	ATCGAT	2 cut(s)	297, 718
CseI	GACGC	3 cut(s)	93, 283, 319
Csp6I	GTAC	2 cut(s)	236, 516
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	5 cut(s)	182, 244, 310, 656, 777
CviQI	GTAC	2 cut(s)	236, 516
DdeI	CTNAG	4 cut(s)	167, 291, 522, 580
DpnI	GATC	5 cut(s)	296, 305, 591, 689, 721
DpnII	GATC	5 cut(s)	294, 303, 589, 687, 719
EaeI	YGGCCR	1 cut(s)	366
Eco130I	CCWWGG	2 cut(s)	655, 665
Eco147I	AGGCCT	2 cut(s)	149, 670
Eco24I	GRGCYC	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	144, 430
EcoT14I	CCWWGG	2 cut(s)	655, 665
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	655, 665
FaeI	CATG	5 cut(s)	185, 247, 313, 659, 780
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	5 cut(s)	181, 243, 309, 655, 776
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	5 cut(s)	205, 210, 278, 288, 462
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	205, 210, 278, 288, 462
GlaI	GCGC	2 cut(s)	208, 232
GluI	GCNGC	5 cut(s)	205, 210, 278, 288, 462
GsaI	CCCAGC	2 cut(s)	204, 243
HaeIII	GGCC	4 cut(s)	149, 368, 429, 670
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	3 cut(s)	93, 283, 319
HhaI	GCGC	2 cut(s)	209, 233
Hin1II	CATG	5 cut(s)	185, 247, 313, 659, 780
Hin6I	GCGC	2 cut(s)	207, 231
HinP1I	GCGC	2 cut(s)	207, 231
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	250, 411, 557
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	458, 461
Hpy166II	GTNNAC	2 cut(s)	108, 334
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	254, 729
Hpy8I	GTNNAC	2 cut(s)	108, 334
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	2 cut(s)	151, 583
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	176, 247, 380, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	4 cut(s)	167, 291, 522, 580
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	5 cut(s)	185, 247, 313, 659, 780
HspAI	GCGC	2 cut(s)	207, 231
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	294, 303, 589, 687, 719
Lsp1109I	GCAGC	4 cut(s)	221, 274, 289, 448
LweI	GCATC	1 cut(s)	622
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	3 cut(s)	67, 467, 544
MalI	GATC	5 cut(s)	296, 305, 591, 689, 721
MboI	GATC	5 cut(s)	294, 303, 589, 687, 719
MboII	GAAGA	4 cut(s)	37, 146, 599, 730
MflI	RGATCY	2 cut(s)	303, 589
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	3 cut(s)	56, 177, 347
MluI	ACGCGT	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	121, 135, 250, 317, 327, 376, 537, 681
Mox20I	TGGCCA	1 cut(s)	368
MroI	TCCGGA	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	1 cut(s)	341
MslI	CAYNNNNRTG	2 cut(s)	581, 770
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	204, 212
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	146, 432
MvaI	CCWGG	2 cut(s)	146, 432
MvnI	CGCG	2 cut(s)	104, 730
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	655
NdeII	GATC	5 cut(s)	294, 303, 589, 687, 719
NlaIII	CATG	5 cut(s)	185, 247, 313, 659, 780
NlaIV	GGNNCC	2 cut(s)	315, 661
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	467
NruI	TCGCGA	1 cut(s)	730
NspI	RCATGY	2 cut(s)	247, 780
NspV	TTCGAA	2 cut(s)	98, 194
PaeI	GCATGC	1 cut(s)	247
PceI	AGGCCT	2 cut(s)	149, 670
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	250, 557
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	5 cut(s)	206, 211, 279, 289, 463
PleI	GAGTC	1 cut(s)	419
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	38
PsiI	TTATAA	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	144, 430
PspCI	CACGTG	1 cut(s)	38
PspFI	CCCAGC	2 cut(s)	200, 239
PspGI	CCWGG	2 cut(s)	144, 430
PspN4I	GGNNCC	2 cut(s)	315, 661
PspPI	GGNCC	2 cut(s)	314, 428
PspPPI	RGGWCCY	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	303, 589
RruI	TCGCGA	1 cut(s)	730
RsaI	GTAC	2 cut(s)	237, 517
RsaNI	GTAC	2 cut(s)	236, 516
RseI	CAYNNNNRTG	2 cut(s)	581, 770
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	5 cut(s)	205, 210, 278, 288, 462
Sau3AI	GATC	5 cut(s)	294, 303, 589, 687, 719
Sau96I	GGNCC	2 cut(s)	314, 428
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	2 cut(s)	146, 432
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	40, 113, 273, 289, 387, 474, 495, 687, 699
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	2 cut(s)	98, 194
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	581, 770
SphI	GCATGC	1 cut(s)	247
Sse9I	AATT	3 cut(s)	56, 177, 347
SseBI	AGGCCT	2 cut(s)	149, 670
SsiI	CCGC	2 cut(s)	204, 212
StuI	AGGCCT	2 cut(s)	149, 670
StyD4I	CCNGG	2 cut(s)	144, 430
StyI	CCWWGG	2 cut(s)	655, 665
TaaI	ACNGT	1 cut(s)	564
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	6 cut(s)	98, 194, 297, 333, 409, 718
TasI	AATT	3 cut(s)	56, 177, 347
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	2 cut(s)	250, 557
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	567, 588
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	4 cut(s)	209, 277, 287, 461
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	170, 565
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	567, 588
Van91I	CCANNNNNTGG	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	2 cut(s)	247, 780
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.