Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005981

Physical Location & Seq

Genomic Coordinates Reverse (-)

34415652 .. 34418046

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34630.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAGTTCGAATTCGGATGTGGTACGCGCGTTGGAGTCGGCGCTGGGGGTTTCGTTCGGTGGTTCGGTGACGGACACGGTGGTGGTGATCGCGACGACTTCAATTGCGCTGATAATTGGGGTTTTGGTATTGGTGTGGAGGAGATCGTCGGATCGGAGCCGGGAGGTGAAGCGGCTGGTGTTGCCCAAGCCGCTTGCTGTGGAGGAAGAGGAAGACGAGTTTGAGGTTGCGGCGGGGAAGACTCGGGTCACCATCTTCTATGGAACTCAGACTGGTACAGCTGAGGGATTCGCTAAGGCTTTGGCTGAGGAGATTAAGGCTAGATATGAGAAAGCTGCTGTGAAGGTTGTCGACCTGGATGACTATGCTGAGGATGATGATAAATATGAAGAAAAACTGAAGAAAGAGACTTTGGCATTTTTTATGTTGGCCACTTATGGAGATGGGGAGCCAACTGATAATGCAGTAAGATTTTACAAATGGTTTACGGAGGGAAAAGATAGGGGTGATTGGCTTCAACATCTAAGATATGGCGTTTTTGCTCTGGGTAACCGACAATATGAACATTTCAATAAGGTAGGAAAAGTGGTTGATGATAAACTTAGTGAAGAAGGTGCAAAGCGTCTTGTTCCTGTTGGCTTAGGTGATGATGACCAGTGCATCGAGGATGATTTTTCTGCTTGGAGGGAATCATTGTGGCCTGAGTTGGATCGATCGGAGATGAAGATGATACAAATTCTGCGGCTACTCCATATACAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

255

Amino Acids

28.68

Weight (kDa)

4.85

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24520 AT4G24520
fragaria_vesca	FvH4_5g34830 FvH4_5g34830 FvH4_5g34830 FvH4_5g34830 FvH4_5g34830
malus_domestica	MD08G1199100.v1.1 MD15G1386100.v1.1
prunus_persica	Prupe.1G532800_v2.0.a1 Prupe.1G532800_v2.0.a1 Prupe.1G532800_v2.0.a1
pyrus_communis	pycom08g17290 pycom15g34630
rosa_chinensis	RchiOBHm_Chr7g0235511
rosa_laevigata	RLG00000001153
rosa_multiflora	Rmu_sc0002617.1_g000018 Rmu_sc0002892.1_g000021 Rmu_sc0039003.1_g000003 Rmu_sc0042677.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225940
rosa_rugosa	Rorug07G0291400
rosa_samantha	Rh7AG446500 Rh7BG418200 Rh7CG466500 Rh7DG435200
rosa_wichuraiana	Rw7G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	3 cut(s)	27, 29, 92
AciI	CCGC	5 cut(s)	172, 191, 230, 233, 742
AclWI	GGATC	2 cut(s)	159, 717
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	10, 735
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	24, 277
AgsI	TTSAA	3 cut(s)	102, 518, 571
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	281, 335, 760
AluI	AGCT	3 cut(s)	281, 335, 760
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	159, 717
Ama87I	CYCGRG	1 cut(s)	243
AoxI	GGCC	2 cut(s)	429, 698
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	10, 735
AspLEI	GCGC	3 cut(s)	29, 43, 109
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	6 cut(s)	79, 97, 178, 241, 518, 656
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	14, 47
BalI	TGGCCA	1 cut(s)	431
BbsI	GAAGAC	2 cut(s)	219, 245
BbvCI	CCTCAGC	3 cut(s)	282, 306, 369
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	260, 437
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	5 cut(s)	173, 191, 231, 336, 743
BlsI	GCNGC	5 cut(s)	174, 192, 232, 337, 744
Bme1390I	CCNGG	2 cut(s)	161, 356
BmeT110I	CYCGRG	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	158, 450
BmrFI	CCNGG	2 cut(s)	161, 356
BmsI	GCATC	1 cut(s)	669
BoxI	GACNNNNGTC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	219, 245
Bpu10I	CCTNAGC	5 cut(s)	282, 294, 306, 369, 640
Bpu14I	TTCGAA	1 cut(s)	8
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	712
Bse1I	ACTGG	2 cut(s)	277, 655
BseBI	CCWGG	1 cut(s)	356
BseCI	ATCGAT	1 cut(s)	712
BseGI	GGATG	4 cut(s)	22, 364, 379, 673
BseMII	CTCAG	5 cut(s)	273, 281, 297, 360, 693
BseNI	ACTGG	2 cut(s)	277, 655
BseRI	GAGGAG	2 cut(s)	154, 323
BseXI	GCAGC	1 cut(s)	322
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	3 cut(s)	27, 29, 92
Bsh1285I	CGRYCG	1 cut(s)	716
BshFI	GGCC	2 cut(s)	431, 700
BshVI	ATCGAT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	716
BsiHKCI	CYCGRG	1 cut(s)	243
BsiSI	CCGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	431, 700
BsoBI	CYCGRG	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	87, 143, 151, 709, 713
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	5 cut(s)	172, 191, 230, 233, 742
BspANI	GGCC	2 cut(s)	431, 700
BspCNI	CTCAG	5 cut(s)	274, 280, 298, 361, 694
BspDI	ATCGAT	1 cut(s)	712
BspFNI	CGCG	3 cut(s)	27, 29, 92
BspLI	GGNNCC	2 cut(s)	158, 450
BspPI	GGATC	2 cut(s)	159, 717
BspT104I	TTCGAA	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	277, 655
BssMI	GATC	5 cut(s)	87, 143, 151, 709, 713
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	9 cut(s)	267, 282, 294, 306, 369, 524, 602, 640, 702
BstEII	GGTNACC	2 cut(s)	247, 548
BstF5I	GGATG	4 cut(s)	22, 364, 379, 673
BstFNI	CGCG	3 cut(s)	27, 29, 92
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	29, 43, 109
BstKTI	GATC	5 cut(s)	90, 146, 154, 712, 716
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	5 cut(s)	87, 143, 151, 709, 713
BstMCI	CGRYCG	1 cut(s)	716
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 190
BstNI	CCWGG	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	245
BstPI	GGTNACC	2 cut(s)	247, 548
BstSCI	CCNGG	2 cut(s)	159, 354
BstUI	CGCG	3 cut(s)	27, 29, 92
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	2 cut(s)	219, 245
Bsu15I	ATCGAT	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	431, 700
BsuTUI	ATCGAT	1 cut(s)	712
BtsCI	GGATG	4 cut(s)	22, 364, 379, 673
BtsIMutI	CAGTG	1 cut(s)	662
BtuMI	TCGCGA	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	3 cut(s)	29, 43, 109
ClaI	ATCGAT	1 cut(s)	712
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	23, 276
CviQI	GTAC	2 cut(s)	23, 276
DdeI	CTNAG	9 cut(s)	267, 282, 294, 306, 369, 524, 602, 640, 702
DpnI	GATC	5 cut(s)	89, 145, 153, 711, 715
DpnII	GATC	5 cut(s)	87, 143, 151, 709, 713
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	243
Eco91I	GGTNACC	2 cut(s)	247, 548
EcoO65I	GGTNACC	2 cut(s)	247, 548
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	354
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	5 cut(s)	173, 191, 231, 336, 743
FokI	GGATG	4 cut(s)	29, 371, 386, 680
Fsp4HI	GCNGC	5 cut(s)	173, 191, 231, 336, 743
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	28, 42, 108
GluI	GCNGC	5 cut(s)	173, 191, 231, 336, 743
GsaI	CCCAGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	431, 700
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	611
HhaI	GCGC	3 cut(s)	29, 43, 109
Hin6I	GCGC	3 cut(s)	27, 41, 107
HinP1I	GCGC	3 cut(s)	27, 41, 107
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	4 cut(s)	35, 241, 288, 689
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	6 cut(s)	79, 97, 178, 241, 518, 656
Hpy166II	GTNNAC	2 cut(s)	352, 486
Hpy188I	TCNGA	5 cut(s)	16, 151, 156, 270, 718
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	352, 486
Hpy99I	CGWCG	2 cut(s)	97, 151
HpyAV	CCTTC	2 cut(s)	337, 605
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	464, 617, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 190
HpyF3I	CTNAG	9 cut(s)	267, 282, 294, 306, 369, 524, 602, 640, 702
HspAI	GCGC	3 cut(s)	27, 41, 107
Kzo9I	GATC	5 cut(s)	87, 143, 151, 709, 713
LmnI	GCTCC	2 cut(s)	156, 448
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	67, 247, 548
MalI	GATC	5 cut(s)	89, 145, 153, 711, 715
MboI	GATC	5 cut(s)	87, 143, 151, 709, 713
MboII	GAAGA	8 cut(s)	218, 224, 247, 250, 401, 412, 620, 736
MfeI	CAATTG	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	4 cut(s)	10, 102, 114, 735
MluNI	TGGCCA	1 cut(s)	431
MlyI	GAGTC	2 cut(s)	44, 235
MmeI	TCCRAC	3 cut(s)	12, 129, 687
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	281, 760
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	161, 356
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	3 cut(s)	27, 29, 92
MwoI	GCNNNNNNNGC	2 cut(s)	181, 190
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	87, 143, 151, 709, 713
NlaIV	GGNNCC	2 cut(s)	158, 450
NmuCI	GTSAC	2 cut(s)	67, 247
NruI	TCGCGA	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	288, 689
PkrI	GCNGC	5 cut(s)	174, 192, 232, 337, 744
Ple19I	CGATCG	1 cut(s)	716
PleI	GAGTC	2 cut(s)	43, 235
PpsI	GAGTC	2 cut(s)	43, 235
PshAI	GACNNNNGTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	354
PspEI	GGTNACC	2 cut(s)	247, 548
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	158, 450
PvuI	CGATCG	1 cut(s)	716
PvuII	CAGCTG	2 cut(s)	281, 760
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	2 cut(s)	24, 277
RsaNI	GTAC	2 cut(s)	23, 276
RseI	CAYNNNNRTG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	5 cut(s)	173, 191, 231, 336, 743
Sau3AI	GATC	5 cut(s)	87, 143, 151, 709, 713
SchI	GAGTC	2 cut(s)	44, 235
ScrFI	CCNGG	2 cut(s)	161, 356
SfaNI	GCATC	1 cut(s)	669
SfuI	TTCGAA	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	10, 102, 114, 735
SsiI	CCGC	5 cut(s)	172, 191, 230, 233, 742
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	159, 354
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	8, 351, 663, 712
TasI	AATT	4 cut(s)	10, 102, 114, 735
TauI	GCSGC	4 cut(s)	175, 193, 233, 745
TfiI	GAWTC	2 cut(s)	288, 689
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	2 cut(s)	67, 247
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	2 cut(s)	67, 247
TspDTI	ATGAA	3 cut(s)	402, 576, 737
TspGWI	ACGGA	2 cut(s)	86, 503
TspRI	CASTG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	10, 735
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.