Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

28414896 .. 28417760

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0291400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACTCCCTTCGCTCGGCAATTGAAGGATGTGATGGAGTATTTCATGTTGCCAGTCCCGCTCCCTCCGGCAGTGTGCCAAATCCTGAGGCAAATTGAGTTAATTGAACCTGCTGTTAAGGGGACACTTAATGTACTTAAAGCATCACTTGAAACAAAAGTCAAGCGAGTTGTTTCTGTGTCCTCTATTGCTGCTGTGGCCGCGAATCCTACATTGGCTGAAGGTCAAGTGTTGGATGAGTCTTGTTGGTCAGATAAGGAATACTGCAGAAATACTGAGAACTGGTATTGCCTTTCAAAAACTGAAGCAGAATCTGAGGCTCTGCAGTTTGCAAAAACAACCGGGATTGATCTTGTGACTGTTTGTCCTACACTTATAATTGGCCCAATTCTGCAGTCGACTGTAAATGCAAGTACCTTCATCTTTATCAAGCTTTTGAAGGAAGGGAAGGAGTCACTGGAAAACAGGCCTCAGAAGATAGTTGACGTACGGGATTTAGCTGAAGCACTTCTTATGGCATATGAGAAGCCGGAGGCTGAAGGAAGATACATATGCATGTCCCACAATGTTAAGAATGGGGATCTAGTTGAGAAGCTGAGGCGCCTTTATCCTAATTACAATTATCCGAAGAACTTTGTTGAAGTAGGCAAAGACAGACAGGTGAGCTCAGAGAAATTGCAAAGGCTAGGTTGGAGTTACCGGTCATTGGACGATACTCTCATTGACTCTGTTGAAAGCTACCGGGAGGCTGGACTATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

254

Amino Acids

28.64

Weight (kDa)

5.36

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	31 - 180	8.9e-12	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	35 - 137	5.1e-06	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	600
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	59, 201
AclWI	GGATC	1 cut(s)	588
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	4 cut(s)	240, 324, 522, 558
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	3 cut(s)	135, 415, 489
AfiI	CCNNNNNNNGG	2 cut(s)	15, 706
AgeI	ACCGGT	1 cut(s)	699
AgsI	TTSAA	7 cut(s)	25, 107, 152, 297, 439, 641, 734
AhdI	GACNNNNNGTC	1 cut(s)	363
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	5 cut(s)	433, 500, 595, 666, 738
AluI	AGCT	5 cut(s)	433, 500, 595, 666, 738
Alw21I	GWGCWC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	588
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	198, 382, 467
ApeKI	GCWGC	1 cut(s)	191
AsiGI	ACCGGT	1 cut(s)	699
Asp700I	GAANNNNTTC	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	2 cut(s)	343, 743
AsuHPI	GGTGA	1 cut(s)	673
AxyI	CCTNAGG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	668
BbvCI	CCTCAGC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	28
BcnI	CCSGG	2 cut(s)	343, 743
BfaI	CTAG	2 cut(s)	584, 686
BfmI	CTRYAG	3 cut(s)	265, 323, 392
BfoI	RGCGCY	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	2 cut(s)	192, 201
BlsI	GCNGC	2 cut(s)	193, 202
Bme1390I	CCNGG	2 cut(s)	343, 743
BmeRI	GACNNNNNGTC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	2 cut(s)	343, 743
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	596
BpuMI	CCSGG	2 cut(s)	343, 743
BsaHI	GRCGYC	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 706
Bse118I	RCCGGY	1 cut(s)	699
Bse1I	ACTGG	3 cut(s)	53, 287, 462
Bse21I	CCTNAGG	1 cut(s)	86
BseGI	GGATG	2 cut(s)	34, 241
BseLI	CCNNNNNNNGG	2 cut(s)	15, 706
BseMII	CTCAG	6 cut(s)	77, 267, 306, 485, 587, 681
BseNI	ACTGG	3 cut(s)	53, 287, 462
BseXI	GCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	3 cut(s)	200, 384, 469
BshNI	GGYRCC	1 cut(s)	600
BshTI	ACCGGT	1 cut(s)	699
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	5 cut(s)	68, 342, 530, 700, 742
BsiWI	CGTACG	1 cut(s)	487
BslFI	GGGAC	3 cut(s)	41, 136, 544
BslI	CCNNNNNNNGG	2 cut(s)	15, 706
BsmFI	GGGAC	3 cut(s)	41, 136, 544
BsnI	GGCC	3 cut(s)	200, 384, 469
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	2 cut(s)	349, 580
BspACI	CCGC	2 cut(s)	59, 201
BspANI	GGCC	3 cut(s)	200, 384, 469
BspCNI	CTCAG	6 cut(s)	78, 268, 307, 484, 588, 680
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	3 cut(s)	269, 327, 396
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	600
BsrBI	CCGCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	699
BsrI	ACTGG	3 cut(s)	53, 287, 462
BssAI	RCCGGY	1 cut(s)	699
BssMI	GATC	2 cut(s)	349, 580
BssNI	GRCGYC	1 cut(s)	601
Bst4CI	ACNGT	2 cut(s)	361, 403
BstACI	GRCGYC	1 cut(s)	601
BstDEI	CTNAG	6 cut(s)	86, 276, 315, 471, 596, 667
BstF5I	GGATG	2 cut(s)	34, 241
BstFNI	CGCG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	2 cut(s)	352, 583
BstMBI	GATC	2 cut(s)	349, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 197, 200
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	341, 741
BstSFI	CTRYAG	3 cut(s)	265, 323, 392
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	200, 384, 469
BtsCI	GGATG	2 cut(s)	34, 241
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 455
BveI	ACCTGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	134, 414, 488
CspAI	ACCGGT	1 cut(s)	699
CviAII	CATG	2 cut(s)	46, 556
CviQI	GTAC	3 cut(s)	134, 414, 488
DdeI	CTNAG	6 cut(s)	86, 276, 315, 471, 596, 667
DinI	GGCGCC	1 cut(s)	602
DpnI	GATC	2 cut(s)	351, 582
DpnII	GATC	2 cut(s)	349, 580
DriI	GACNNNNNGTC	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	666
Eco57I	CTGAAG	4 cut(s)	240, 324, 522, 558
Eco81I	CCTNAGG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	557
EcoT38I	GRGCYC	1 cut(s)	668
EgeI	GGCGCC	1 cut(s)	602
EheI	GGCGCC	1 cut(s)	602
FaeI	CATG	2 cut(s)	49, 559
FaiI	YATR	8 cut(s)	47, 377, 515, 520, 522, 551, 553, 557
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 495, 527
FaqI	GGGAC	3 cut(s)	41, 136, 544
FatI	CATG	2 cut(s)	45, 555
FauI	CCCGC	1 cut(s)	66
FauNDI	CATATG	2 cut(s)	520, 551
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	2 cut(s)	192, 201
FokI	GGATG	2 cut(s)	41, 248
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	2 cut(s)	192, 201
FspBI	CTAG	2 cut(s)	584, 686
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	2 cut(s)	192, 201
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	3 cut(s)	200, 384, 469
HapII	CCGG	5 cut(s)	68, 342, 530, 700, 742
HhaI	GCGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	601
Hin1II	CATG	2 cut(s)	49, 559
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	2 cut(s)	399, 484
HindII	GTYRAC	2 cut(s)	399, 484
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	6 cut(s)	4, 205, 239, 311, 452, 725
HpaII	CCGG	5 cut(s)	68, 342, 530, 700, 742
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	2 cut(s)	399, 484
Hpy188I	TCNGA	5 cut(s)	253, 316, 474, 627, 670
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	399, 484
HpyAV	CCTTC	8 cut(s)	19, 19, 215, 427, 433, 437, 442, 533
HpyCH4III	ACNGT	2 cut(s)	361, 403
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	7 cut(s)	267, 325, 332, 394, 410, 555, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 197, 200
HpyF3I	CTNAG	6 cut(s)	86, 276, 315, 471, 596, 667
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	601
Hsp92II	CATG	2 cut(s)	49, 559
HspAI	GCGC	1 cut(s)	601
KasI	GGCGCC	1 cut(s)	600
Kzo9I	GATC	2 cut(s)	349, 580
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	584, 686
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	3 cut(s)	355, 453, 695
MalI	GATC	2 cut(s)	351, 582
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	2 cut(s)	349, 580
MboII	GAAGA	3 cut(s)	487, 555, 640
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	8 cut(s)	20, 93, 102, 378, 387, 613, 619, 674
Mly113I	GGCGCC	1 cut(s)	601
MlyI	GAGTC	3 cut(s)	248, 461, 719
MmeI	TCCRAC	2 cut(s)	213, 671
MnlI	CCTC	8 cut(s)	75, 81, 193, 310, 480, 526, 591, 739
Mph1103I	ATGCAT	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	507
MseI	TTAA	5 cut(s)	101, 117, 129, 138, 570
MslI	CAYNNNNRTG	1 cut(s)	554
MspI	CCGG	5 cut(s)	68, 342, 530, 700, 742
MspR9I	CCNGG	2 cut(s)	343, 743
MunI	CAATTG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	58, 197, 200
NarI	GGCGCC	1 cut(s)	601
NciI	CCSGG	2 cut(s)	343, 743
NdeI	CATATG	2 cut(s)	520, 551
NdeII	GATC	2 cut(s)	349, 580
NlaIII	CATG	2 cut(s)	49, 559
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	2 cut(s)	355, 453
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	205, 311
Pfl23II	CGTACG	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	699
PkrI	GCNGC	2 cut(s)	193, 202
PleI	GAGTC	3 cut(s)	247, 460, 719
PluTI	GGCGCC	1 cut(s)	604
PpsI	GAGTC	3 cut(s)	247, 460, 719
PsiI	TTATAA	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	668
PspLI	CGTACG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	3 cut(s)	269, 327, 396
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	3 cut(s)	135, 415, 489
RsaNI	GTAC	3 cut(s)	134, 414, 488
RseI	CAYNNNNRTG	1 cut(s)	554
SacI	GAGCTC	1 cut(s)	668
SalI	GTCGAC	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	101, 117, 129, 138, 570
SatI	GCNGC	2 cut(s)	192, 201
Sau3AI	GATC	2 cut(s)	349, 580
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	3 cut(s)	248, 461, 719
ScrFI	CCNGG	2 cut(s)	343, 743
SduI	GDGCHC	1 cut(s)	668
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	3 cut(s)	265, 323, 392
SfoI	GGCGCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	554
Sse9I	AATT	8 cut(s)	20, 93, 102, 378, 387, 613, 619, 674
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	2 cut(s)	59, 201
SspDI	GGCGCC	1 cut(s)	600
SspMI	CTAG	2 cut(s)	584, 686
SstI	GAGCTC	1 cut(s)	668
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	341, 741
TaaI	ACNGT	2 cut(s)	361, 403
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	398
TasI	AATT	8 cut(s)	20, 93, 102, 378, 387, 613, 619, 674
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	205, 311
Tru1I	TTAA	5 cut(s)	101, 117, 129, 138, 570
Tru9I	TTAA	5 cut(s)	101, 117, 129, 138, 570
TscAI	CASTG	2 cut(s)	78, 462
TseFI	GTSAC	2 cut(s)	355, 453
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	2 cut(s)	355, 453
TspDTI	ATGAA	2 cut(s)	34, 409
TspRI	CASTG	2 cut(s)	78, 462
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	507
XspI	CTAG	2 cut(s)	584, 686
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.