Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

69491 .. 74841

Gene Structure 5351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atgggtgagaaccctaaggaggagaagaagggtttcatcaccgaagaagataccgccactctgttacagaggtacacagcgacgacgatactggcattgctgcaggaagtggcacacttgttgcagtcggagaagatcgattgggataagttggtggccaatactacaactgggattacaaatgctagagagtttcagatgctttggcgacatttggcttatagggaacctttgcctgacaaattcgatgatggagctcggcctcaggatgtagatagtgattacgaatatgaagtggaagttgctcctcctgttagcggtgaagcttcaacagaggctgcagcatgtgtgaagagatggggtattgttaagaagcggcaaaaaaagttgggtgtgggagaaggaggcacaccgtgcattaaaaaagaggcattgctggcagctcaccaggcaataacccattttttagataatgggccgaatagagcgtctattacagtgggcactgtgggaacaaatgcaaacggcacatctgctgaaacaaatgcgaacagtaggtctggtgtaacaaatggaatacgcaactctgggctgcatactactactgctgaaggccttaatgcaaaaaaaccaaatcggataggatcattcggttcgactccaaaaggtcgagttacctccaagaaaaccttgccaaagtctaatatgaatccagatatcataagagcaactgcagttgctgctggggcacgcattgtcacgcagtcagatgctgaactgcttaaggctgctgctcaagcaaagaacactatccatatcatgcctcaaacagggggttctatcaagtcattgacacctggcggcttgtccattaaatcagagcctcatcctactgtgcatcatattcgtactggcccagctgcaacactgccttccacccatccacccactagacaccctgggtccttaaaagttgtatcccagacaagtcaacaagctttgaagattgacacatccagaaagatcactggggttaacagtagccctggtgctgaagtcttacgaaagcaggtccaaaatgaagtactccctggcagtggacaggttcaagaaggtaaggtagagtcaccaaagcagaaagctgagtcagaaagtttattaaccaatgctcagaatcttgctggttcattacacactaagaaagatgggagtaatgataaagcagtaacaggtgaagagagacggggtagtataggaggaggtgatgatccatcagcagtaaatggtgaagaccaaaacacaacactgaaacggacaacagatgtttctgaccatgatcttaagcaaggaggaggcagccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

454

Amino Acids

48.17

Weight (kDa)

9.05

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1060
AciI	CCGC	4 cut(s)	54, 318, 376, 861
AclWI	GGATC	2 cut(s)	652, 1262
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	630, 1074
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	74, 910, 1086
AfiI	CCNNNNNNNGG	4 cut(s)	19, 317, 830, 1097
AflII	CTTAAG	2 cut(s)	782, 1340
AgsI	TTSAA	3 cut(s)	330, 1003, 1109
AjnI	CCWGG	5 cut(s)	447, 856, 958, 1045, 1090
AluBI	AGCT	6 cut(s)	257, 326, 443, 920, 998, 1142
AluI	AGCT	6 cut(s)	257, 326, 443, 920, 998, 1142
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	1234
AlwI	GGATC	2 cut(s)	652, 1262
AlwNI	CAGNNNCTG	3 cut(s)	338, 740, 773
AoxI	GGCC	5 cut(s)	156, 260, 476, 613, 913
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	4 cut(s)	473, 505, 542, 574
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	476, 914, 963, 1072
AsuHPI	GGTGA	8 cut(s)	17, 31, 332, 437, 1119, 1244, 1274, 1298
AvaII	GGWCC	2 cut(s)	963, 1072
AxyI	CCTNAGG	2 cut(s)	15, 264
BaeGI	GKGCMC	2 cut(s)	506, 751
BalI	TGGCCA	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	1296
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	9 cut(s)	87, 325, 353, 452, 579, 727, 775, 778, 907
BccI	CCATC	5 cut(s)	245, 351, 948, 1199, 1279
BceAI	ACGGC	1 cut(s)	541
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	5 cut(s)	449, 858, 960, 1047, 1092
BciVI	GTATCC	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	1234
BfaI	CTAG	2 cut(s)	186, 951
BfmI	CTRYAG	3 cut(s)	101, 339, 732
BfrI	CTTAAG	2 cut(s)	782, 1340
BfuAI	ACCTGC	1 cut(s)	1060
BfuI	GTATCC	1 cut(s)	988
BmcAI	AGTACT	1 cut(s)	1086
Bme1390I	CCNGG	5 cut(s)	449, 858, 960, 1047, 1092
Bme18I	GGWCC	2 cut(s)	963, 1072
BmgT120I	GGNCC	4 cut(s)	476, 914, 963, 1072
BmiI	GGNNCC	2 cut(s)	228, 964
BmrFI	CCNGG	5 cut(s)	449, 858, 960, 1047, 1092
BmrI	ACTGGG	2 cut(s)	180, 1038
BmsI	GCATC	3 cut(s)	189, 760, 907
BmuI	ACTGGG	2 cut(s)	180, 1038
BpiI	GAAGAC	1 cut(s)	1296
BpuEI	CTTGAG	1 cut(s)	780
Bsa29I	ATCGAT	1 cut(s)	138
BsaJI	CCNNGG	4 cut(s)	958, 959, 1045, 1090
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 317, 830, 1097
Bse1I	ACTGG	4 cut(s)	96, 175, 916, 1033
Bse21I	CCTNAGG	2 cut(s)	15, 264
Bse3DI	GCAATG	2 cut(s)	95, 431
BseBI	CCWGG	5 cut(s)	449, 858, 960, 1047, 1092
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	4 cut(s)	958, 959, 1045, 1090
BseGI	GGATG	4 cut(s)	274, 886, 940, 1013
BseLI	CCNNNNNNNGG	4 cut(s)	19, 317, 830, 1097
BseMI	GCAATG	2 cut(s)	95, 431
BseMII	CTCAG	3 cut(s)	278, 1134, 1184
BseNI	ACTGG	4 cut(s)	96, 175, 916, 1033
BseRI	GAGGAG	4 cut(s)	35, 297, 1272, 1365
BseSI	GKGCMC	2 cut(s)	506, 751
BseXI	GCAGC	9 cut(s)	87, 325, 353, 452, 579, 727, 775, 778, 907
BseYI	CCCAGC	2 cut(s)	743, 916
BshFI	GGCC	5 cut(s)	158, 262, 478, 615, 915
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	259
BslI	CCNNNNNNNGG	4 cut(s)	19, 317, 830, 1097
BsmAI	GTCTC	1 cut(s)	1234
BsmBI	CGTCTC	1 cut(s)	1234
BsnI	GGCC	5 cut(s)	158, 262, 478, 615, 915
Bsp1286I	GDGCHC	3 cut(s)	259, 506, 751
Bsp143I	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
BspACI	CCGC	4 cut(s)	54, 318, 376, 861
BspANI	GGCC	5 cut(s)	158, 262, 478, 615, 915
BspCNI	CTCAG	3 cut(s)	277, 1135, 1183
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	228, 964
BspMAI	CTGCAG	3 cut(s)	105, 343, 736
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	2 cut(s)	652, 1262
BspTI	CTTAAG	2 cut(s)	782, 1340
BsrDI	GCAATG	2 cut(s)	95, 431
BsrI	ACTGG	4 cut(s)	96, 175, 916, 1033
BssECI	CCNNGG	4 cut(s)	958, 959, 1045, 1090
BssMI	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
Bst2UI	CCWGG	5 cut(s)	449, 858, 960, 1047, 1092
Bst4CI	ACNGT	6 cut(s)	414, 499, 508, 554, 895, 1040
Bst6I	CTCTTC	2 cut(s)	347, 1230
BstAFI	CTTAAG	2 cut(s)	782, 1340
BstAPI	GCANNNNNTGC	2 cut(s)	414, 740
BstC8I	GCNNGC	2 cut(s)	438, 751
BstDEI	CTNAG	5 cut(s)	15, 264, 1143, 1170, 1197
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	4 cut(s)	274, 886, 940, 1013
BstKTI	GATC	5 cut(s)	138, 647, 1026, 1270, 1339
BstMAI	GTCTC	1 cut(s)	1234
BstMBI	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
BstMWI	GCNNNNNNNGC	6 cut(s)	414, 437, 449, 740, 746, 797
BstNI	CCWGG	5 cut(s)	449, 858, 960, 1047, 1092
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	5 cut(s)	447, 856, 958, 1045, 1090
BstSFI	CTRYAG	3 cut(s)	101, 339, 732
BstSLI	GKGCMC	2 cut(s)	506, 751
BstV1I	GCAGC	9 cut(s)	87, 325, 353, 452, 579, 727, 775, 778, 907
BstV2I	GAAGAC	1 cut(s)	1296
Bsu15I	ATCGAT	1 cut(s)	138
Bsu36I	CCTNAGG	2 cut(s)	15, 264
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	5 cut(s)	158, 262, 478, 615, 915
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	4 cut(s)	274, 886, 940, 1013
BtsI	GCAGTG	2 cut(s)	926, 1102
BtsIMutI	CAGTG	6 cut(s)	504, 504, 926, 1026, 1102, 1304
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	2 cut(s)	438, 751
CaiI	CAGNNNCTG	3 cut(s)	338, 740, 773
Cfr13I	GGNCC	4 cut(s)	476, 914, 963, 1072
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	3 cut(s)	73, 909, 1085
CviAII	CATG	3 cut(s)	345, 820, 1334
CviQI	GTAC	3 cut(s)	73, 909, 1085
DdeI	CTNAG	5 cut(s)	15, 264, 1143, 1170, 1197
DpnI	GATC	5 cut(s)	137, 646, 1025, 1269, 1338
DpnII	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
DraIII	CACNNNGTG	1 cut(s)	414
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	347, 1230
EarI	CTCTTC	2 cut(s)	347, 1230
Ecl136II	GAGCTC	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	259
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	963, 1072
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	630, 1074
Eco81I	CCTNAGG	2 cut(s)	15, 264
EcoICRI	GAGCTC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	963
EcoRII	CCWGG	5 cut(s)	447, 856, 958, 1045, 1090
EcoRV	GATATC	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	1234
FaeI	CATG	3 cut(s)	348, 823, 1337
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FatI	CATG	3 cut(s)	344, 819, 1333
FokI	GGATG	4 cut(s)	281, 873, 927, 1000
FriOI	GRGCYC	1 cut(s)	259
FspBI	CTAG	2 cut(s)	186, 951
GsaI	CCCAGC	2 cut(s)	747, 920
HaeIII	GGCC	5 cut(s)	158, 262, 478, 615, 915
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	348, 823, 1337
HincII	GTYRAC	2 cut(s)	992, 1036
HindII	GTYRAC	2 cut(s)	992, 1036
HindIII	AAGCTT	2 cut(s)	324, 996
HinfI	GANTC	5 cut(s)	658, 709, 1124, 1145, 1174
HpaI	GTTAAC	1 cut(s)	1036
HphI	GGTGA	8 cut(s)	17, 31, 332, 437, 1119, 1244, 1274, 1298
Hpy166II	GTNNAC	4 cut(s)	75, 992, 1036, 1100
Hpy188I	TCNGA	8 cut(s)	130, 198, 639, 769, 880, 1150, 1173, 1330
Hpy188III	TCNNGA	4 cut(s)	266, 713, 1017, 1109
Hpy8I	GTNNAC	4 cut(s)	75, 992, 1036, 1100
Hpy99I	CGWCG	2 cut(s)	85, 88
HpyAV	CCTTC	5 cut(s)	22, 395, 605, 942, 1106
HpyCH4III	ACNGT	6 cut(s)	414, 499, 508, 554, 895, 1040
HpyF10VI	GCNNNNNNNGC	6 cut(s)	414, 437, 449, 740, 746, 797
HpyF3I	CTNAG	5 cut(s)	15, 264, 1143, 1170, 1197
Hsp92II	CATG	3 cut(s)	348, 823, 1337
KspAI	GTTAAC	1 cut(s)	1036
Kzo9I	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
LmnI	GCTCC	2 cut(s)	254, 310
Lsp1109I	GCAGC	9 cut(s)	87, 325, 353, 452, 579, 727, 775, 778, 907
LweI	GCATC	3 cut(s)	189, 760, 907
MaeI	CTAG	2 cut(s)	186, 951
MaeIII	GTNAC	6 cut(s)	63, 565, 673, 757, 1125, 1225
MalI	GATC	5 cut(s)	137, 646, 1025, 1269, 1338
MboI	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
MboII	GAAGA	8 cut(s)	37, 56, 59, 145, 364, 1015, 1247, 1301
MhlI	GDGCHC	3 cut(s)	259, 506, 751
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	652, 1133, 1154
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	920
MspCI	CTTAAG	2 cut(s)	782, 1340
MspR9I	CCNGG	5 cut(s)	449, 858, 960, 1047, 1092
MvaI	CCWGG	5 cut(s)	449, 858, 960, 1047, 1092
MwoI	GCNNNNNNNGC	6 cut(s)	414, 437, 449, 740, 746, 797
NdeII	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
NlaIII	CATG	3 cut(s)	348, 823, 1337
NlaIV	GGNNCC	2 cut(s)	228, 964
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	757, 1125
NspI	RCATGY	1 cut(s)	348
PasI	CCCWGGG	1 cut(s)	959
PceI	AGGCCT	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	709, 1174
PleI	GAGTC	3 cut(s)	652, 1132, 1153
PpsI	GAGTC	3 cut(s)	652, 1132, 1153
PpuMI	RGGWCCY	1 cut(s)	963
Psp124BI	GAGCTC	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	963
Psp6I	CCWGG	5 cut(s)	447, 856, 958, 1045, 1090
PspFI	CCCAGC	2 cut(s)	743, 916
PspGI	CCWGG	5 cut(s)	447, 856, 958, 1045, 1090
PspN4I	GGNNCC	2 cut(s)	228, 964
PspPI	GGNCC	4 cut(s)	476, 914, 963, 1072
PspPPI	RGGWCCY	1 cut(s)	963
PstI	CTGCAG	3 cut(s)	105, 343, 736
PstNI	CAGNNNCTG	3 cut(s)	338, 740, 773
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	3 cut(s)	74, 910, 1086
RsaNI	GTAC	3 cut(s)	73, 909, 1085
SacI	GAGCTC	1 cut(s)	259
Sau3AI	GATC	5 cut(s)	135, 644, 1023, 1267, 1336
Sau96I	GGNCC	4 cut(s)	476, 914, 963, 1072
ScaI	AGTACT	1 cut(s)	1086
SchI	GAGTC	3 cut(s)	652, 1133, 1154
ScrFI	CCNGG	5 cut(s)	449, 858, 960, 1047, 1092
SduI	GDGCHC	3 cut(s)	259, 506, 751
SfaNI	GCATC	3 cut(s)	189, 760, 907
SfcI	CTRYAG	3 cut(s)	101, 339, 732
SinI	GGWCC	2 cut(s)	963, 1072
SmlI	CTYRAG	3 cut(s)	782, 795, 1340
SmoI	CTYRAG	3 cut(s)	782, 795, 1340
Sse9I	AATT	1 cut(s)	242
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	4 cut(s)	54, 318, 376, 861
SspMI	CTAG	2 cut(s)	186, 951
SstI	GAGCTC	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	5 cut(s)	447, 856, 958, 1045, 1090
TaaI	ACNGT	6 cut(s)	414, 499, 508, 554, 895, 1040
TaqI	TCGA	4 cut(s)	138, 246, 656, 670
TasI	AATT	1 cut(s)	242
TatI	WGTACW	1 cut(s)	1084
TauI	GCSGC	2 cut(s)	379, 864
TfiI	GAWTC	2 cut(s)	709, 1174
TscAI	CASTG	6 cut(s)	504, 511, 933, 1033, 1102, 1311
TseFI	GTSAC	2 cut(s)	757, 1125
Tsp45I	GTSAC	2 cut(s)	757, 1125
TspDTI	ATGAA	5 cut(s)	25, 306, 722, 1095, 1176
TspGWI	ACGGA	1 cut(s)	1327
TspRI	CASTG	6 cut(s)	504, 511, 933, 1033, 1102, 1311
Vha464I	CTTAAG	2 cut(s)	782, 1340
VpaK11BI	GGWCC	2 cut(s)	963, 1072
XagI	CCTNNNNNAGG	1 cut(s)	828
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	186, 951
ZrmI	AGTACT	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.