SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220 |
| fragaria_vesca | FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 |
| malus_domestica | MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1 |
| prunus_persica | Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 |
| pyrus_communis | pycom08g17100 pycom08g17280 pycom15g34620 |
| rosa_chinensis | RchiOBHm_Chr7g0235501 |
| rosa_laevigata | RLG00000001154 |
| rosa_multiflora | Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00225950 |
| rosa_rugosa | Rorug07G0291300 Rorug07G0291400 |
| rosa_samantha | Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900 |
| rosa_wichuraiana | Rw7G037060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 373 |
| AciI | CCGC | 5 cut(s) | 54, 208, 318, 471, 766 |
| AclWI | GGATC | 2 cut(s) | 1042, 1652 |
| AcoI | YGGCCR | 2 cut(s) | 156, 442 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcuI | CTGAAG | 4 cut(s) | 459, 582, 1020, 1464 |
| AdeI | CACNNNGTG | 2 cut(s) | 804, 1250 |
| AfaI | GTAC | 3 cut(s) | 74, 1300, 1476 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 19, 317, 791, 1220, 1487 |
| AflII | CTTAAG | 2 cut(s) | 1172, 1730 |
| AgsI | TTSAA | 4 cut(s) | 330, 712, 1393, 1499 |
| AjnI | CCWGG | 5 cut(s) | 837, 1246, 1348, 1435, 1480 |
| AleI | CACNNNNGTG | 1 cut(s) | 407 |
| AluBI | AGCT | 7 cut(s) | 257, 326, 560, 736, 833, 1388, 1532 |
| AluI | AGCT | 7 cut(s) | 257, 326, 560, 736, 833, 1388, 1532 |
| Alw21I | GWGCWC | 1 cut(s) | 259 |
| Alw26I | GTCTC | 2 cut(s) | 658, 1624 |
| AlwI | GGATC | 2 cut(s) | 1042, 1652 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 338, 1130, 1163 |
| AoxI | GGCC | 7 cut(s) | 111, 156, 260, 442, 866, 1003, 1303 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 932, 964 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 32 |
| AspS9I | GGNCC | 7 cut(s) | 112, 355, 782, 866, 1304, 1353, 1462 |
| AsuC2I | CCSGG | 2 cut(s) | 786, 1307 |
| AsuHPI | GGTGA | 9 cut(s) | 17, 31, 332, 686, 827, 1509, 1634, 1664, 1688 |
| AvaII | GGWCC | 4 cut(s) | 355, 782, 1353, 1462 |
| AxyI | CCTNAGG | 2 cut(s) | 15, 264 |
| BaeGI | GKGCMC | 2 cut(s) | 896, 1141 |
| BalI | TGGCCA | 2 cut(s) | 158, 444 |
| BanII | GRGCYC | 1 cut(s) | 259 |
| BbsI | GAAGAC | 1 cut(s) | 1686 |
| Bbv12I | GWGCWC | 1 cut(s) | 259 |
| BccI | CCATC | 6 cut(s) | 245, 475, 741, 1338, 1589, 1669 |
| BceAI | ACGGC | 1 cut(s) | 931 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1277, 1311 |
| BciT130I | CCWGG | 5 cut(s) | 839, 1248, 1350, 1437, 1482 |
| BciVI | GTATCC | 1 cut(s) | 1378 |
| BcnI | CCSGG | 2 cut(s) | 786, 1307 |
| BcoDI | GTCTC | 2 cut(s) | 658, 1624 |
| BfaI | CTAG | 3 cut(s) | 186, 387, 1341 |
| BfmI | CTRYAG | 4 cut(s) | 101, 339, 546, 1122 |
| BfrI | CTTAAG | 2 cut(s) | 1172, 1730 |
| BfuI | GTATCC | 1 cut(s) | 1378 |
| BmcAI | AGTACT | 1 cut(s) | 1476 |
| Bme1390I | CCNGG | 7 cut(s) | 786, 839, 1248, 1307, 1350, 1437, 1482 |
| Bme18I | GGWCC | 4 cut(s) | 355, 782, 1353, 1462 |
| BmgT120I | GGNCC | 7 cut(s) | 112, 355, 782, 866, 1304, 1353, 1462 |
| BmiI | GGNNCC | 5 cut(s) | 228, 417, 603, 783, 1354 |
| BmrFI | CCNGG | 7 cut(s) | 786, 839, 1248, 1307, 1350, 1437, 1482 |
| BmrI | ACTGGG | 2 cut(s) | 180, 1428 |
| BmsI | GCATC | 5 cut(s) | 189, 562, 887, 1150, 1297 |
| BmuI | ACTGGG | 2 cut(s) | 180, 1428 |
| BpiI | GAAGAC | 1 cut(s) | 1686 |
| BpuEI | CTTGAG | 1 cut(s) | 1170 |
| BpuMI | CCSGG | 2 cut(s) | 786, 1307 |
| Bsa29I | ATCGAT | 1 cut(s) | 138 |
| BsaI | GGTCTC | 1 cut(s) | 658 |
| BsaJI | CCNNGG | 5 cut(s) | 605, 1348, 1349, 1435, 1480 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 510, 540 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 19, 317, 791, 1220, 1487 |
| Bse1I | ACTGG | 7 cut(s) | 96, 175, 445, 503, 654, 1306, 1423 |
| Bse21I | CCTNAGG | 2 cut(s) | 15, 264 |
| Bse3DI | GCAATG | 2 cut(s) | 95, 821 |
| BseBI | CCWGG | 5 cut(s) | 839, 1248, 1350, 1437, 1482 |
| BseCI | ATCGAT | 1 cut(s) | 138 |
| BseDI | CCNNGG | 5 cut(s) | 605, 1348, 1349, 1435, 1480 |
| BseGI | GGATG | 4 cut(s) | 274, 467, 1276, 1330 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 19, 317, 791, 1220, 1487 |
| BseMI | GCAATG | 2 cut(s) | 95, 821 |
| BseMII | CTCAG | 5 cut(s) | 278, 755, 1166, 1524, 1574 |
| BseNI | ACTGG | 7 cut(s) | 96, 175, 445, 503, 654, 1306, 1423 |
| BseRI | GAGGAG | 7 cut(s) | 35, 297, 594, 647, 650, 1662, 1755 |
| BseSI | GKGCMC | 2 cut(s) | 896, 1141 |
| BseYI | CCCAGC | 1 cut(s) | 1133 |
| BshFI | GGCC | 7 cut(s) | 113, 158, 262, 444, 868, 1005, 1305 |
| BshVI | ATCGAT | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 259 |
| BsiSI | CCGG | 2 cut(s) | 785, 1307 |
| BslFI | GGGAC | 1 cut(s) | 731 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 19, 317, 791, 1220, 1487 |
| BsmAI | GTCTC | 2 cut(s) | 658, 1624 |
| BsmBI | CGTCTC | 1 cut(s) | 1624 |
| BsmFI | GGGAC | 1 cut(s) | 731 |
| BsnI | GGCC | 7 cut(s) | 113, 158, 262, 444, 868, 1005, 1305 |
| Bso31I | GGTCTC | 1 cut(s) | 658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 259, 896, 1141 |
| Bsp143I | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| BspACI | CCGC | 5 cut(s) | 54, 208, 318, 471, 766 |
| BspANI | GGCC | 7 cut(s) | 113, 158, 262, 444, 868, 1005, 1305 |
| BspCNI | CTCAG | 5 cut(s) | 277, 754, 1165, 1525, 1573 |
| BspDI | ATCGAT | 1 cut(s) | 138 |
| BspLI | GGNNCC | 5 cut(s) | 228, 417, 603, 783, 1354 |
| BspMAI | CTGCAG | 4 cut(s) | 105, 343, 550, 1126 |
| BspPI | GGATC | 2 cut(s) | 1042, 1652 |
| BspTI | CTTAAG | 2 cut(s) | 1172, 1730 |
| BspTNI | GGTCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 2 cut(s) | 95, 821 |
| BsrI | ACTGG | 7 cut(s) | 96, 175, 445, 503, 654, 1306, 1423 |
| BssECI | CCNNGG | 5 cut(s) | 605, 1348, 1349, 1435, 1480 |
| BssMI | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| Bst2UI | CCWGG | 5 cut(s) | 839, 1248, 1350, 1437, 1482 |
| Bst4CI | ACNGT | 8 cut(s) | 409, 499, 804, 889, 898, 944, 1285, 1430 |
| Bst6I | CTCTTC | 2 cut(s) | 608, 1620 |
| BstAFI | CTTAAG | 2 cut(s) | 1172, 1730 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 804, 1130 |
| BstC8I | GCNNGC | 2 cut(s) | 828, 1141 |
| BstDEI | CTNAG | 7 cut(s) | 15, 264, 741, 1152, 1533, 1560, 1587 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1218 |
| BstF5I | GGATG | 4 cut(s) | 274, 467, 1276, 1330 |
| BstKTI | GATC | 6 cut(s) | 138, 584, 1037, 1416, 1660, 1729 |
| BstMAI | GTCTC | 2 cut(s) | 658, 1624 |
| BstMBI | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 208, 557, 804, 827, 839, 1130, 1136, 1187 |
| BstNI | CCWGG | 5 cut(s) | 839, 1248, 1350, 1437, 1482 |
| BstNSI | RCATGY | 1 cut(s) | 348 |
| BstSCI | CCNGG | 7 cut(s) | 784, 837, 1246, 1305, 1348, 1435, 1480 |
| BstSFI | CTRYAG | 4 cut(s) | 101, 339, 546, 1122 |
| BstSLI | GKGCMC | 2 cut(s) | 896, 1141 |
| BstV2I | GAAGAC | 1 cut(s) | 1686 |
| Bsu15I | ATCGAT | 1 cut(s) | 138 |
| Bsu36I | CCTNAGG | 2 cut(s) | 15, 264 |
| BsuI | GTATCC | 1 cut(s) | 1378 |
| BsuRI | GGCC | 7 cut(s) | 113, 158, 262, 444, 868, 1005, 1305 |
| BsuTUI | ATCGAT | 1 cut(s) | 138 |
| BtsCI | GGATG | 4 cut(s) | 274, 467, 1276, 1330 |
| BtsI | GCAGTG | 1 cut(s) | 1492 |
| BtsIMutI | CAGTG | 5 cut(s) | 894, 894, 1416, 1492, 1694 |
| Cac8I | GCNNGC | 2 cut(s) | 828, 1141 |
| CaiI | CAGNNNCTG | 3 cut(s) | 338, 1130, 1163 |
| Cfr13I | GGNCC | 7 cut(s) | 112, 355, 782, 866, 1304, 1353, 1462 |
| ClaI | ATCGAT | 1 cut(s) | 138 |
| CsiI | ACCWGGT | 1 cut(s) | 1246 |
| Csp6I | GTAC | 3 cut(s) | 73, 1299, 1475 |
| CviAII | CATG | 5 cut(s) | 345, 487, 598, 1210, 1724 |
| CviQI | GTAC | 3 cut(s) | 73, 1299, 1475 |
| DdeI | CTNAG | 7 cut(s) | 15, 264, 741, 1152, 1533, 1560, 1587 |
| DpnI | GATC | 6 cut(s) | 137, 583, 1036, 1415, 1659, 1728 |
| DpnII | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| DraIII | CACNNNGTG | 2 cut(s) | 804, 1250 |
| EaeI | YGGCCR | 2 cut(s) | 156, 442 |
| Eam1104I | CTCTTC | 2 cut(s) | 608, 1620 |
| EarI | CTCTTC | 2 cut(s) | 608, 1620 |
| Ecl136II | GAGCTC | 1 cut(s) | 257 |
| Eco147I | AGGCCT | 1 cut(s) | 1005 |
| Eco24I | GRGCYC | 1 cut(s) | 259 |
| Eco31I | GGTCTC | 1 cut(s) | 658 |
| Eco32I | GATATC | 1 cut(s) | 1108 |
| Eco47I | GGWCC | 4 cut(s) | 355, 782, 1353, 1462 |
| Eco53kI | GAGCTC | 1 cut(s) | 257 |
| Eco57I | CTGAAG | 4 cut(s) | 459, 582, 1020, 1464 |
| Eco81I | CCTNAGG | 2 cut(s) | 15, 264 |
| EcoICRI | GAGCTC | 1 cut(s) | 257 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1218 |
| EcoO109I | RGGNCCY | 2 cut(s) | 355, 1353 |
| EcoRII | CCWGG | 5 cut(s) | 837, 1246, 1348, 1435, 1480 |
| EcoRV | GATATC | 1 cut(s) | 1108 |
| EcoT38I | GRGCYC | 1 cut(s) | 259 |
| Esp3I | CGTCTC | 1 cut(s) | 1624 |
| FaeI | CATG | 5 cut(s) | 348, 490, 601, 1213, 1727 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1064, 1096 |
| FaqI | GGGAC | 1 cut(s) | 731 |
| FatI | CATG | 5 cut(s) | 344, 486, 597, 1209, 1723 |
| FauNDI | CATATG | 1 cut(s) | 460 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| FokI | GGATG | 4 cut(s) | 281, 454, 1263, 1317 |
| FriOI | GRGCYC | 1 cut(s) | 259 |
| FspBI | CTAG | 3 cut(s) | 186, 387, 1341 |
| GsaI | CCCAGC | 1 cut(s) | 1137 |
| HaeIII | GGCC | 7 cut(s) | 113, 158, 262, 444, 868, 1005, 1305 |
| HapII | CCGG | 2 cut(s) | 785, 1307 |
| Hin1II | CATG | 5 cut(s) | 348, 490, 601, 1213, 1727 |
| HincII | GTYRAC | 2 cut(s) | 1382, 1426 |
| HindII | GTYRAC | 2 cut(s) | 1382, 1426 |
| HindIII | AAGCTT | 2 cut(s) | 324, 1386 |
| HinfI | GANTC | 8 cut(s) | 383, 688, 1048, 1099, 1378, 1514, 1535, 1564 |
| HpaI | GTTAAC | 1 cut(s) | 1426 |
| HpaII | CCGG | 2 cut(s) | 785, 1307 |
| HphI | GGTGA | 9 cut(s) | 17, 31, 332, 686, 827, 1509, 1634, 1664, 1688 |
| Hpy166II | GTNNAC | 7 cut(s) | 75, 374, 627, 664, 1382, 1426, 1490 |
| Hpy188III | TCNNGA | 4 cut(s) | 266, 1103, 1407, 1499 |
| Hpy8I | GTNNAC | 7 cut(s) | 75, 374, 627, 664, 1382, 1426, 1490 |
| Hpy99I | CGWCG | 2 cut(s) | 85, 88 |
| HpyAV | CCTTC | 8 cut(s) | 22, 346, 557, 671, 785, 995, 1332, 1496 |
| HpyCH4III | ACNGT | 8 cut(s) | 409, 499, 804, 889, 898, 944, 1285, 1430 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 208, 557, 804, 827, 839, 1130, 1136, 1187 |
| HpyF3I | CTNAG | 7 cut(s) | 15, 264, 741, 1152, 1533, 1560, 1587 |
| Hsp92II | CATG | 5 cut(s) | 348, 490, 601, 1213, 1727 |
| KspAI | GTTAAC | 1 cut(s) | 1426 |
| Kzo9I | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| LmnI | GCTCC | 4 cut(s) | 254, 310, 421, 607 |
| LweI | GCATC | 5 cut(s) | 189, 562, 887, 1150, 1297 |
| MabI | ACCWGGT | 1 cut(s) | 1246 |
| MaeI | CTAG | 3 cut(s) | 186, 387, 1341 |
| MaeIII | GTNAC | 5 cut(s) | 955, 1063, 1147, 1515, 1615 |
| MalI | GATC | 6 cut(s) | 137, 583, 1036, 1415, 1659, 1728 |
| MboI | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| MboII | GAAGA | 9 cut(s) | 37, 56, 59, 145, 622, 625, 1405, 1637, 1691 |
| MhlI | GDGCHC | 3 cut(s) | 259, 896, 1141 |
| MlsI | TGGCCA | 2 cut(s) | 158, 444 |
| MluCI | AATT | 2 cut(s) | 242, 682 |
| MluNI | TGGCCA | 2 cut(s) | 158, 444 |
| MlyI | GAGTC | 5 cut(s) | 682, 1042, 1387, 1523, 1544 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| Mox20I | TGGCCA | 2 cut(s) | 158, 444 |
| MroXI | GAANNNNTTC | 1 cut(s) | 32 |
| MscI | TGGCCA | 2 cut(s) | 158, 444 |
| MslI | CAYNNNNRTG | 2 cut(s) | 396, 407 |
| Msp20I | TGGCCA | 2 cut(s) | 158, 444 |
| MspCI | CTTAAG | 2 cut(s) | 1172, 1730 |
| MspI | CCGG | 2 cut(s) | 785, 1307 |
| MspR9I | CCNGG | 7 cut(s) | 786, 839, 1248, 1307, 1350, 1437, 1482 |
| MvaI | CCWGG | 5 cut(s) | 839, 1248, 1350, 1437, 1482 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 208, 557, 804, 827, 839, 1130, 1136, 1187 |
| NciI | CCSGG | 2 cut(s) | 786, 1307 |
| NdeI | CATATG | 1 cut(s) | 460 |
| NdeII | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| NlaIII | CATG | 5 cut(s) | 348, 490, 601, 1213, 1727 |
| NlaIV | GGNNCC | 5 cut(s) | 228, 417, 603, 783, 1354 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NmuCI | GTSAC | 2 cut(s) | 1147, 1515 |
| NspI | RCATGY | 1 cut(s) | 348 |
| OliI | CACNNNNGTG | 1 cut(s) | 407 |
| PasI | CCCWGGG | 1 cut(s) | 1349 |
| PceI | AGGCCT | 1 cut(s) | 1005 |
| PdmI | GAANNNNTTC | 1 cut(s) | 32 |
| PfeI | GAWTC | 3 cut(s) | 383, 1099, 1564 |
| PfoI | TCCNGGA | 1 cut(s) | 784 |
| PleI | GAGTC | 5 cut(s) | 682, 1042, 1386, 1522, 1543 |
| PpsI | GAGTC | 5 cut(s) | 682, 1042, 1386, 1522, 1543 |
| PpuMI | RGGWCCY | 2 cut(s) | 355, 1353 |
| Psp124BI | GAGCTC | 1 cut(s) | 259 |
| Psp5II | RGGWCCY | 2 cut(s) | 355, 1353 |
| Psp6I | CCWGG | 5 cut(s) | 837, 1246, 1348, 1435, 1480 |
| PspFI | CCCAGC | 1 cut(s) | 1133 |
| PspGI | CCWGG | 5 cut(s) | 837, 1246, 1348, 1435, 1480 |
| PspN4I | GGNNCC | 5 cut(s) | 228, 417, 603, 783, 1354 |
| PspPI | GGNCC | 7 cut(s) | 112, 355, 782, 866, 1304, 1353, 1462 |
| PspPPI | RGGWCCY | 2 cut(s) | 355, 1353 |
| PstI | CTGCAG | 4 cut(s) | 105, 343, 550, 1126 |
| PstNI | CAGNNNCTG | 3 cut(s) | 338, 1130, 1163 |
| RsaI | GTAC | 3 cut(s) | 74, 1300, 1476 |
| RsaNI | GTAC | 3 cut(s) | 73, 1299, 1475 |
| RseI | CAYNNNNRTG | 2 cut(s) | 396, 407 |
| SacI | GAGCTC | 1 cut(s) | 259 |
| Sau3AI | GATC | 6 cut(s) | 135, 581, 1034, 1413, 1657, 1726 |
| Sau96I | GGNCC | 7 cut(s) | 112, 355, 782, 866, 1304, 1353, 1462 |
| ScaI | AGTACT | 1 cut(s) | 1476 |
| SchI | GAGTC | 5 cut(s) | 682, 1042, 1387, 1523, 1544 |
| ScrFI | CCNGG | 7 cut(s) | 786, 839, 1248, 1307, 1350, 1437, 1482 |
| SduI | GDGCHC | 3 cut(s) | 259, 896, 1141 |
| SexAI | ACCWGGT | 1 cut(s) | 1246 |
| SfaNI | GCATC | 5 cut(s) | 189, 562, 887, 1150, 1297 |
| SfcI | CTRYAG | 4 cut(s) | 101, 339, 546, 1122 |
| SinI | GGWCC | 4 cut(s) | 355, 782, 1353, 1462 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 396, 407 |
| SmlI | CTYRAG | 3 cut(s) | 1172, 1185, 1730 |
| SmoI | CTYRAG | 3 cut(s) | 1172, 1185, 1730 |
| Sse9I | AATT | 2 cut(s) | 242, 682 |
| SseBI | AGGCCT | 1 cut(s) | 1005 |
| SsiI | CCGC | 5 cut(s) | 54, 208, 318, 471, 766 |
| SspMI | CTAG | 3 cut(s) | 186, 387, 1341 |
| SstI | GAGCTC | 1 cut(s) | 259 |
| StuI | AGGCCT | 1 cut(s) | 1005 |
| StyD4I | CCNGG | 7 cut(s) | 784, 837, 1246, 1305, 1348, 1435, 1480 |
| TaaI | ACNGT | 8 cut(s) | 409, 499, 804, 889, 898, 944, 1285, 1430 |
| TaqI | TCGA | 4 cut(s) | 138, 246, 1046, 1060 |
| TasI | AATT | 2 cut(s) | 242, 682 |
| TatI | WGTACW | 1 cut(s) | 1474 |
| TauI | GCSGC | 2 cut(s) | 211, 769 |
| TfiI | GAWTC | 3 cut(s) | 383, 1099, 1564 |
| TscAI | CASTG | 5 cut(s) | 894, 901, 1423, 1492, 1701 |
| TseFI | GTSAC | 2 cut(s) | 1147, 1515 |
| Tsp45I | GTSAC | 2 cut(s) | 1147, 1515 |
| TspDTI | ATGAA | 7 cut(s) | 25, 306, 477, 503, 1112, 1485, 1566 |
| TspGWI | ACGGA | 1 cut(s) | 1717 |
| TspRI | CASTG | 5 cut(s) | 894, 901, 1423, 1492, 1701 |
| Vha464I | CTTAAG | 2 cut(s) | 1172, 1730 |
| VpaK11BI | GGWCC | 4 cut(s) | 355, 782, 1353, 1462 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1218 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XceI | RCATGY | 1 cut(s) | 348 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XmnI | GAANNNNTTC | 1 cut(s) | 32 |
| XspI | CTAG | 3 cut(s) | 186, 387, 1341 |
| ZrmI | AGTACT | 1 cut(s) | 1476 |