Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

17252457 .. 17256119

Gene Structure 3663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCCTCCAATTTAGGCCTCGAGTTCACCATGTCGAGACCTTTCTCTCTCGCCTGCAAACGAAGGAGTCAGCTCATTGCAGCCAAGATCGACTTGCGCGACGTCGACCGCCACCGCCTCCGGCTCATCGGCTCCACGCATTCTCAGTTGGCTGGGACAAGCACACACAGCAAGCTTGCTGGAACAAATGCAGCTAGTAACTCTCTGCATTTTACCACTGCTGAAGCTAAACCGCAGTCCCAAGGCCTTAACCCAGTGAAAGCTGAAGCAAAACCGCAGTCCCAGCAAGGCCTTAACCCAGCGAAAACATATCACATAGGATTGTCGGGTTCCACGACAAAAGCTCCAATGATCGCCAAAAACTACAACGAAGCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

127

Amino Acids

13.58

Weight (kDa)

10.14

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	109, 115, 233, 275
AcuI	CTGAAG	2 cut(s)	243, 285
AcyI	GRCGYC	1 cut(s)	102
AluBI	AGCT	7 cut(s)	73, 175, 194, 227, 263, 344, 374
AluI	AGCT	7 cut(s)	73, 175, 194, 227, 263, 344, 374
Alw26I	GTCTC	1 cut(s)	31
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	3, 16, 244, 289
ApeKI	GCWGC	2 cut(s)	80, 191
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspLEI	GCGC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	92, 203
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	81, 192
BlsI	GCNGC	2 cut(s)	82, 193
BmeT110I	CYCGRG	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	133, 331
BmrI	ACTGGG	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	92, 203
BseYI	CCCAGC	3 cut(s)	152, 282, 298
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	4 cut(s)	5, 18, 246, 291
BsiEI	CGRYCG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	3 cut(s)	169, 223, 265
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	3 cut(s)	169, 223, 265
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	5, 18, 246, 291
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	87, 351
BspACI	CCGC	4 cut(s)	109, 115, 233, 275
BspANI	GGCC	4 cut(s)	5, 18, 246, 291
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	133, 331
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	87, 351
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	241
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	55, 173, 177
BstDEI	CTNAG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	90, 354
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	87, 351
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 283
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	92, 203
BsuRI	GGCC	4 cut(s)	5, 18, 246, 291
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	2 cut(s)	216, 261
Cac8I	GCNNGC	3 cut(s)	55, 173, 177
CfoI	GCGC	1 cut(s)	99
CviAII	CATG	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	89, 353
DpnII	GATC	2 cut(s)	87, 351
Eco130I	CCWWGG	1 cut(s)	241
Eco147I	AGGCCT	3 cut(s)	18, 246, 291
Eco31I	GGTCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	243, 285
Eco88I	CYCGRG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 310, 317
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	3 cut(s)	169, 223, 265
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	81, 192
Fsp4HI	GCNGC	2 cut(s)	81, 192
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	81, 192
GsaI	CCCAGC	3 cut(s)	156, 286, 302
HaeIII	GGCC	4 cut(s)	5, 18, 246, 291
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	173, 372
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	27, 106
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	2 cut(s)	27, 106
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	1 cut(s)	57
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	57, 80, 191, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 283
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	87, 351
LmnI	GCTCC	2 cut(s)	137, 349
LpnPI	CCDG	7 cut(s)	67, 134, 138, 165, 267, 296, 312
Lsp1109I	GCAGC	2 cut(s)	92, 203
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	89, 353
MboI	GATC	2 cut(s)	87, 351
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	16, 29, 128
MseI	TTAA	2 cut(s)	249, 294
MspI	CCGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	139
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	168, 283
NdeII	GATC	2 cut(s)	87, 351
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	133, 331
PaeR7I	CTCGAG	1 cut(s)	20
PceI	AGGCCT	3 cut(s)	18, 246, 291
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 332
PctI	GAATGC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	82, 193
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PspFI	CCCAGC	3 cut(s)	152, 282, 298
PspN4I	GGNNCC	2 cut(s)	133, 331
PspXI	VCTCGAGB	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	249, 294
SatI	GCNGC	2 cut(s)	81, 192
Sau3AI	GATC	2 cut(s)	87, 351
SchI	GAGTC	1 cut(s)	76
SetI	ASST	9 cut(s)	43, 75, 105, 177, 196, 229, 265, 346, 376
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	10
SseBI	AGGCCT	3 cut(s)	18, 246, 291
SsiI	CCGC	4 cut(s)	109, 115, 233, 275
SspMI	CTAG	1 cut(s)	195
StuI	AGGCCT	3 cut(s)	18, 246, 291
StyI	CCWWGG	1 cut(s)	241
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	21, 35, 90, 105
TasI	AATT	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	249, 294
Tru9I	TTAA	2 cut(s)	249, 294
TscAI	CASTG	2 cut(s)	223, 261
TseI	GCWGC	2 cut(s)	80, 191
TspRI	CASTG	2 cut(s)	223, 261
XhoI	CTCGAG	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.