Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

34402641 .. 34404337

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTGCACTAATGCCTTTTGCTCCTACTATTTTTGTGGGTTTATATTACAGAGGTGGAAAAAAATTAGGCAGAACAATCTAGACTTGAATGTTGGAGGCGGCTCAAGTAATAAACTTTCAGAAGCACAGGAGGCAGCTCGTCATTCATTGTCCATAGCCCTGAATATGCCTAACATCACAGCTAATACAATTGGCACCGCTGGGACAAGTACACACAGCAAGCTTGCTGGAACAAATGCAACTAGCAACTCTGTGCATTGTACTACTGCTGAAGCAAAACCGCAGTCCCAGCAAGGCCTTAACCCAGTGAAAACATATCAAACAGGATTGTCGGGCTCCACAACAAAAGCTCCAGTGATCGCCAAAAAAACTATACCGAAGCTTACTGTTAGTATGGTAAGAGCCGCTGCGGTTGCTGCTGGGGCTCGCATTGCTTTTCCTTCAGATGCTGCATCACTTCTCAAGGCTGCTCAGGCGAAGAATGCTGTCCGTATCATGCCTACAAGTGGTTCTTCTACCCAATCTGTTAAACCTGGCAGCATGTCTACCCACTCAGAACTTCCTCCTAATGTACATATAATGCGTAGCAGCTCGGCTGCTATACCACCTTCCATCCCTTCATCCACTGCTGCCACACCTGGCACTACACGCCCTCGGCCTTCAAAAGTTCTTCCTCAGGCAAGTCAGCACACTCCAACTAGTGACGCAATGTTATCCAGACAGACCAATGGTGTTAGCTGTAACCTGGATGCTGAGCCGGGCTCTGCTCCGACAGATCAGGTCCAAGATGGAGCAGTGATCTCTAGGGATGGACCGAATGACCGAGTTCAAAAGGATAAATCACCTGACCAGAAAGCTCAGTCAAAAAATTTGTCAACGAATGCTGAAAATCCCGTTGATTCACTGAAGATCGAAAGGGATGAAACTGATGGTAAAGCTGTCACAGGTGTAAAAGCTGAAGAGAGAAAAAGTGCAAAAGATAATGAGATTCCGTGTTCATCTGTTAATGTAGGAGGCAGTGATCCATCTGCAGTTGACAGTTGTGAAACCGAAGCGCAAGTGAGAAGCACACAGATCTTCTCACCATTGCAACAGATGGATGCAAGGGAAAACAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

374

Amino Acids

39.07

Weight (kDa)

9.21

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	5 cut(s)	99, 198, 281, 405, 410
AclWI	GGATC	1 cut(s)	1016
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	4 cut(s)	291, 426, 926, 978
AfaI	GTAC	3 cut(s)	211, 262, 573
AfiI	CCNNNNNNNGG	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	88, 663, 830
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	3 cut(s)	532, 637, 744
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	1016
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	295, 656
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	9 cut(s)	134, 407, 416, 449, 467, 537, 588, 596, 629
ApoI	RAATTY	1 cut(s)	868
ArsI	GACNNNNNNTTYG	4 cut(s)	269, 301, 857, 889
AspLEI	GCGC	1 cut(s)	1057
AspS9I	GGNCC	2 cut(s)	781, 812
AsuC2I	CCSGG	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	834, 1074
AvaII	GGWCC	2 cut(s)	781, 812
AxyI	CCTNAGG	1 cut(s)	675
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	3 cut(s)	338, 427, 764
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	9 cut(s)	146, 394, 403, 436, 454, 549, 583, 600, 616
BccI	CCATC	6 cut(s)	620, 782, 803, 923, 1033, 1090
BciT130I	CCWGG	3 cut(s)	534, 639, 746
BcnI	CCSGG	1 cut(s)	759
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	4 cut(s)	80, 243, 699, 804
BfmI	CTRYAG	1 cut(s)	1029
BglII	AGATCT	1 cut(s)	1074
BlpI	GCTNAGC	1 cut(s)	753
Bme1390I	CCNGG	4 cut(s)	534, 639, 746, 759
Bme18I	GGWCC	2 cut(s)	781, 812
BmgT120I	GGNCC	2 cut(s)	781, 812
BmiI	GGNNCC	2 cut(s)	196, 337
BmrFI	CCNGG	4 cut(s)	534, 639, 746, 759
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	4 cut(s)	436, 461, 739, 1090
BmuI	ACTGGG	1 cut(s)	299
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpmI	CTGGAG	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	2 cut(s)	88, 446
BpuMI	CCSGG	1 cut(s)	759
BsaJI	CCNNGG	1 cut(s)	653
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	305, 353
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	3 cut(s)	429, 714, 1085
BseBI	CCWGG	3 cut(s)	534, 639, 746
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	6 cut(s)	612, 620, 754, 814, 925, 1105
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	3 cut(s)	429, 714, 1085
BseMII	CTCAG	5 cut(s)	485, 567, 689, 744, 872
BseNI	ACTGG	2 cut(s)	305, 353
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	9 cut(s)	146, 394, 403, 436, 454, 549, 583, 600, 616
BseYI	CCCAGC	3 cut(s)	200, 288, 419
BshFI	GGCC	2 cut(s)	297, 658
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	758
BslFI	GGGAC	2 cut(s)	217, 271
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	217, 271
BsmI	GAATGC	2 cut(s)	487, 886
BsnI	GGCC	2 cut(s)	297, 658
Bsp1286I	GDGCHC	4 cut(s)	8, 338, 427, 764
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	5 cut(s)	99, 198, 281, 405, 410
BspANI	GGCC	2 cut(s)	297, 658
BspCNI	CTCAG	5 cut(s)	484, 566, 688, 745, 871
BspLI	GGNNCC	2 cut(s)	196, 337
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	1 cut(s)	1016
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	3 cut(s)	429, 714, 1085
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	305, 353
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
Bst2UI	CCWGG	3 cut(s)	534, 639, 746
Bst4CI	ACNGT	2 cut(s)	388, 1040
Bst6I	CTCTTC	1 cut(s)	954
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	3 cut(s)	221, 225, 427
BstDEI	CTNAG	5 cut(s)	471, 553, 675, 753, 858
BstF5I	GGATG	6 cut(s)	612, 620, 754, 814, 925, 1105
BstHHI	GCGC	1 cut(s)	1057
BstKTI	GATC	6 cut(s)	360, 778, 801, 912, 1024, 1077
BstMBI	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
BstMWI	GCNNNNNNNGC	9 cut(s)	131, 289, 413, 416, 422, 431, 473, 482, 648
BstNI	CCWGG	3 cut(s)	534, 639, 746
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	4 cut(s)	532, 637, 744, 757
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	9 cut(s)	146, 394, 403, 436, 454, 549, 583, 600, 616
BstX2I	RGATCY	1 cut(s)	1074
BstYI	RGATCY	1 cut(s)	1074
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	297, 658
BtsCI	GGATG	6 cut(s)	612, 620, 754, 814, 925, 1105
BtsI	GCAGTG	3 cut(s)	624, 801, 1024
BtsIMutI	CAGTG	6 cut(s)	312, 360, 624, 801, 902, 1024
Cac8I	GCNNGC	3 cut(s)	221, 225, 427
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	1 cut(s)	1057
Cfr13I	GGNCC	2 cut(s)	781, 812
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	210, 261, 572
CviAII	CATG	2 cut(s)	496, 541
CviQI	GTAC	3 cut(s)	210, 261, 572
DdeI	CTNAG	5 cut(s)	471, 553, 675, 753, 858
DpnI	GATC	6 cut(s)	359, 777, 800, 911, 1023, 1076
DpnII	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
Eam1104I	CTCTTC	1 cut(s)	954
EarI	CTCTTC	1 cut(s)	954
Eco147I	AGGCCT	1 cut(s)	297
Eco24I	GRGCYC	3 cut(s)	338, 427, 764
Eco47I	GGWCC	2 cut(s)	781, 812
Eco57I	CTGAAG	4 cut(s)	291, 426, 926, 978
Eco81I	CCTNAGG	1 cut(s)	675
EcoRII	CCWGG	3 cut(s)	532, 637, 744
EcoT38I	GRGCYC	3 cut(s)	338, 427, 764
FaeI	CATG	2 cut(s)	499, 544
FalI	AAGNNNNNCTT	2 cut(s)	496, 528
FaqI	GGGAC	2 cut(s)	217, 271
FatI	CATG	2 cut(s)	495, 540
FblI	GTMKAC	1 cut(s)	545
FokI	GGATG	6 cut(s)	599, 607, 761, 821, 932, 1112
FriOI	GRGCYC	3 cut(s)	338, 427, 764
FspBI	CTAG	4 cut(s)	80, 243, 699, 804
GlaI	GCGC	1 cut(s)	1056
GsaI	CCCAGC	3 cut(s)	204, 292, 423
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	297, 658
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	1057
Hin1II	CATG	2 cut(s)	499, 544
Hin6I	GCGC	1 cut(s)	1055
HinP1I	GCGC	1 cut(s)	1055
HincII	GTYRAC	2 cut(s)	876, 1036
HindII	GTYRAC	2 cut(s)	876, 1036
HindIII	AAGCTT	2 cut(s)	221, 380
HinfI	GANTC	2 cut(s)	899, 988
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	2 cut(s)	834, 1074
Hpy166II	GTNNAC	5 cut(s)	6, 212, 546, 876, 1036
Hpy188I	TCNGA	4 cut(s)	121, 445, 556, 771
Hpy188III	TCNNGA	2 cut(s)	80, 717
Hpy8I	GTNNAC	5 cut(s)	6, 212, 546, 876, 1036
HpyAV	CCTTC	4 cut(s)	450, 618, 627, 669
HpyCH4III	ACNGT	2 cut(s)	388, 1040
HpyCH4V	TGCA	8 cut(s)	6, 239, 256, 452, 974, 1031, 1090, 1103
HpyF10VI	GCNNNNNNNGC	9 cut(s)	131, 289, 413, 416, 422, 431, 473, 482, 648
HpyF3I	CTNAG	5 cut(s)	471, 553, 675, 753, 858
Hsp92II	CATG	2 cut(s)	499, 544
HspAI	GCGC	1 cut(s)	1055
Kzo9I	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
LmnI	GCTCC	5 cut(s)	26, 341, 355, 772, 791
Lsp1109I	GCAGC	9 cut(s)	146, 394, 403, 436, 454, 549, 583, 600, 616
LweI	GCATC	4 cut(s)	436, 461, 739, 1090
MaeI	CTAG	4 cut(s)	80, 243, 699, 804
MaeIII	GTNAC	3 cut(s)	701, 740, 940
MalI	GATC	6 cut(s)	359, 777, 800, 911, 1023, 1076
MboI	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
MboII	GAAGA	6 cut(s)	490, 504, 662, 919, 971, 1069
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	1074
MhlI	GDGCHC	4 cut(s)	8, 338, 427, 764
MluCI	AATT	3 cut(s)	63, 189, 868
MmeI	TCCRAC	3 cut(s)	73, 719, 794
MnlI	CCTC	7 cut(s)	45, 89, 124, 573, 663, 684, 1007
MseI	TTAA	4 cut(s)	300, 528, 1005, 1120
MspA1I	CMGCKG	2 cut(s)	200, 407
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	4 cut(s)	534, 639, 746, 759
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	2 cut(s)	487, 886
MvaI	CCWGG	3 cut(s)	534, 639, 746
MwoI	GCNNNNNNNGC	9 cut(s)	131, 289, 413, 416, 422, 431, 473, 482, 648
NciI	CCSGG	1 cut(s)	759
NdeII	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
NlaIII	CATG	2 cut(s)	499, 544
NlaIV	GGNNCC	2 cut(s)	196, 337
NmeAIII	GCCGAG	2 cut(s)	572, 634
NmuCI	GTSAC	2 cut(s)	701, 940
NspI	RCATGY	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	297
PctI	GAATGC	2 cut(s)	487, 886
PfeI	GAWTC	2 cut(s)	899, 988
Psp6I	CCWGG	3 cut(s)	532, 637, 744
PspFI	CCCAGC	3 cut(s)	200, 288, 419
PspGI	CCWGG	3 cut(s)	532, 637, 744
PspN4I	GGNNCC	2 cut(s)	196, 337
PspPI	GGNCC	2 cut(s)	781, 812
PstI	CTGCAG	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	1074
RsaI	GTAC	3 cut(s)	211, 262, 573
RsaNI	GTAC	3 cut(s)	210, 261, 572
SaqAI	TTAA	4 cut(s)	300, 528, 1005, 1120
Sau3AI	GATC	6 cut(s)	357, 775, 798, 909, 1021, 1074
Sau96I	GGNCC	2 cut(s)	781, 812
ScrFI	CCNGG	4 cut(s)	534, 639, 746, 759
SduI	GDGCHC	4 cut(s)	8, 338, 427, 764
SfaNI	GCATC	4 cut(s)	436, 461, 739, 1090
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	2 cut(s)	781, 812
SmlI	CTYRAG	2 cut(s)	103, 461
SmoI	CTYRAG	2 cut(s)	103, 461
SpeI	ACTAGT	1 cut(s)	698
Sse9I	AATT	3 cut(s)	63, 189, 868
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	5 cut(s)	99, 198, 281, 405, 410
SspMI	CTAG	4 cut(s)	80, 243, 699, 804
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	4 cut(s)	532, 637, 744, 757
TaaI	ACNGT	2 cut(s)	388, 1040
TaqI	TCGA	1 cut(s)	912
TaqII	GACCGA	2 cut(s)	829, 837
TasI	AATT	3 cut(s)	63, 189, 868
TatI	WGTACW	3 cut(s)	209, 260, 571
TauI	GCSGC	2 cut(s)	102, 407
TfiI	GAWTC	2 cut(s)	899, 988
Tru1I	TTAA	4 cut(s)	300, 528, 1005, 1120
Tru9I	TTAA	4 cut(s)	300, 528, 1005, 1120
TscAI	CASTG	6 cut(s)	312, 360, 631, 801, 909, 1024
TseFI	GTSAC	2 cut(s)	701, 940
TseI	GCWGC	9 cut(s)	134, 407, 416, 449, 467, 537, 588, 596, 629
Tsp45I	GTSAC	2 cut(s)	701, 940
TspDTI	ATGAA	4 cut(s)	135, 609, 936, 987
TspGWI	ACGGA	2 cut(s)	479, 981
TspRI	CASTG	6 cut(s)	312, 360, 631, 801, 909, 1024
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	2 cut(s)	781, 812
XapI	RAATTY	1 cut(s)	868
XbaI	TCTAGA	1 cut(s)	79
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	545
XspI	CTAG	4 cut(s)	80, 243, 699, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.