MD15G1386000.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002451
Physical Location & Seq
Reverse (-)
47682489 .. 47687779
5291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1386000.v1.1.491

Sequence Viewer

Length: 756 bp
ATGCTTGAGAAAGCCAAGGACCCTAAGAAGGGCTTTATCACCGAAGAAGATACCGCCACTCTCTTACAAAGGTATGCGCCGACGACTGTGCTGGCTCTGCTGCAGGAAGTGGCGAACTCACCTGATGGGAAGATCGATTGGAATCGGTTGGTGGCCAAGACTTCAACTGGAATTTCTAATGCCAGAGAGTATCAGATGCTTTGGCGCCATTTAGCGTATCGTGAAGCTCTGCTTGACAAATTAGACAATGGGGCTCAACCTTTGGATGATGATAGTGATTTAGAATACGAAGTGGAATCTTTTCCTGCTGTTAGTGCTGAAGCTTCAACAGAAGCTGCTGCATGCGCGAAGGTTCTAATTTCATCTGGTTTATCAAGTGATGCAAGTCATCAGAATGGTTTAACTGTTGAGGGTCCGTTATCAATGAATTTACCCAATGGCCAGTCATCTAGATCTCATCAAAATTCACAAGCAGCATGTTCAATGCAAGGGAAGAACATTACAGTTCCAATTTCGGTTCTGAAAAATCCCCTCCCTGCAGTGGCAGCATCTACAGTGGAAACTATTGAAGGAGATGATGCATTAGGAAATGGCATGGCTCCTCGAAAAAGAAGAAAGAAGTGGTCTGAGGCTGAAGATTTGGAGCTGATTGCTGCTGTCCAGAAATATGGGGAAGGAAATTGGGCAAATATCTTACGAGGAGATTTCAAAGGGGACAGAACACCTAGTCAGCTAGCTCAGTGCATTCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

252

Amino Acids

27.17

Weight (kDa)

5.03

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 205 - 244 1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 204
AccII CGCG 1 cut(s) 347
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 153, 439
AcsI RAATTY 3 cut(s) 171, 427, 463
AcuI CTGAAG 2 cut(s) 339, 654
AcyI GRCGYC 1 cut(s) 205
AfiI CCNNNNNNNGG 3 cut(s) 28, 29, 541
AgsI TTSAA 6 cut(s) 165, 327, 483, 569, 709, 749
AluBI AGCT 6 cut(s) 227, 323, 335, 646, 733, 737
AluI AGCT 6 cut(s) 227, 323, 335, 646, 733, 737
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 2 cut(s) 153, 439
ApeKI GCWGC 6 cut(s) 100, 335, 338, 473, 545, 653
ApoI RAATTY 3 cut(s) 171, 427, 463
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 3 cut(s) 79, 207, 347
AspS9I GGNCC 2 cut(s) 19, 413
AsuHPI GGTGA 2 cut(s) 31, 111
AsuNHI GCTAGC 1 cut(s) 733
AvaII GGWCC 2 cut(s) 19, 413
BalI TGGCCA 2 cut(s) 155, 441
BanI GGYRCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 6 cut(s) 87, 322, 325, 485, 557, 640
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfaI CTAG 3 cut(s) 450, 726, 734
BfmI CTRYAG 3 cut(s) 101, 537, 552
BfoI RGCGCY 1 cut(s) 208
BglII AGATCT 1 cut(s) 452
BisI GCNGC 6 cut(s) 101, 336, 339, 474, 546, 654
BlsI GCNGC 6 cut(s) 102, 337, 340, 475, 547, 655
Bme18I GGWCC 2 cut(s) 19, 413
BmgT120I GGNCC 2 cut(s) 19, 413
BmiI GGNNCC 4 cut(s) 21, 206, 414, 600
BmsI GCATC 4 cut(s) 186, 370, 557, 568
BmtI GCTAGC 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 29, 541
Bse1I ACTGG 2 cut(s) 172, 442
Bse8I GATNNNNATC 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 28, 29, 541
BseMII CTCAG 2 cut(s) 618, 752
BseNI ACTGG 2 cut(s) 172, 442
BseRI GAGGAG 2 cut(s) 591, 714
BseXI GCAGC 6 cut(s) 87, 322, 325, 485, 557, 640
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 155, 441
BshNI GGYRCC 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 135
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 28, 29, 541
BsmFI GGGAC 1 cut(s) 728
BsmI GAATGC 1 cut(s) 744
BsnI GGCC 2 cut(s) 155, 441
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 132, 452
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 155, 441
BspCNI CTCAG 2 cut(s) 619, 751
BspDI ATCGAT 1 cut(s) 135
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 4 cut(s) 21, 206, 414, 600
BspMAI CTGCAG 2 cut(s) 105, 541
BspOI GCTAGC 1 cut(s) 737
BspT107I GGYRCC 1 cut(s) 204
BsrI ACTGG 2 cut(s) 172, 442
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 132, 452
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 4 cut(s) 88, 406, 505, 556
BstACI GRCGYC 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 93, 343, 735
BstDEI CTNAG 3 cut(s) 24, 627, 738
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 3 cut(s) 79, 207, 347
BstKTI GATC 2 cut(s) 135, 455
BstMBI GATC 2 cut(s) 132, 452
BstMWI GCNNNNNNNGC 4 cut(s) 97, 314, 344, 545
BstNSI RCATGY 2 cut(s) 345, 480
BstSFI CTRYAG 3 cut(s) 101, 537, 552
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 6 cut(s) 87, 322, 325, 485, 557, 640
BstX2I RGATCY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 668
BstYI RGATCY 1 cut(s) 452
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 2 cut(s) 155, 441
BsuTUI ATCGAT 1 cut(s) 135
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 546, 561, 746
Cac8I GCNNGC 3 cut(s) 93, 343, 735
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 3 cut(s) 79, 207, 347
Cfr13I GGNCC 2 cut(s) 19, 413
ClaI ATCGAT 1 cut(s) 135
CviAII CATG 3 cut(s) 342, 477, 595
DdeI CTNAG 3 cut(s) 24, 627, 738
DinI GGCGCC 1 cut(s) 206
DpnI GATC 2 cut(s) 134, 454
DpnII GATC 2 cut(s) 132, 452
EaeI YGGCCR 2 cut(s) 153, 439
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 19, 413
Eco57I CTGAAG 2 cut(s) 339, 654
EcoO109I RGGNCCY 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 256
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 3 cut(s) 345, 480, 598
FaiI YATR 5 cut(s) 75, 343, 478, 596, 669
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 216, 248
FaqI GGGAC 1 cut(s) 728
FatI CATG 3 cut(s) 341, 476, 594
Fnu4HI GCNGC 6 cut(s) 101, 336, 339, 474, 546, 654
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 6 cut(s) 101, 336, 339, 474, 546, 654
FspBI CTAG 3 cut(s) 450, 726, 734
GlaI GCGC 3 cut(s) 78, 206, 346
GluI GCNGC 6 cut(s) 101, 336, 339, 474, 546, 654
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 2 cut(s) 155, 441
HhaI GCGC 3 cut(s) 79, 207, 347
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 3 cut(s) 345, 480, 598
Hin6I GCGC 3 cut(s) 77, 205, 345
HinP1I GCGC 3 cut(s) 77, 205, 345
HindIII AAGCTT 1 cut(s) 321
HinfI GANTC 2 cut(s) 142, 296
HphI GGTGA 2 cut(s) 31, 111
Hpy188I TCNGA 4 cut(s) 195, 393, 522, 628
Hpy188III TCNNGA 3 cut(s) 221, 450, 661
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 4 cut(s) 22, 343, 563, 668
HpyCH4III ACNGT 4 cut(s) 88, 406, 505, 556
HpyCH4V TGCA 7 cut(s) 103, 341, 383, 487, 539, 581, 744
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 314, 344, 545
HpyF3I CTNAG 3 cut(s) 24, 627, 738
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 3 cut(s) 345, 480, 598
HspAI GCGC 3 cut(s) 77, 205, 345
KasI GGCGCC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 132, 452
LmnI GCTCC 2 cut(s) 604, 643
Lsp1109I GCAGC 6 cut(s) 87, 322, 325, 485, 557, 640
LweI GCATC 4 cut(s) 186, 370, 557, 568
MaeI CTAG 3 cut(s) 450, 726, 734
MalI GATC 2 cut(s) 134, 454
MboI GATC 2 cut(s) 132, 452
MboII GAAGA 6 cut(s) 56, 59, 142, 505, 624, 647
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 256
MlsI TGGCCA 2 cut(s) 155, 441
MluCI AATT 8 cut(s) 171, 239, 357, 427, 463, 510, 679, 751
MluNI TGGCCA 2 cut(s) 155, 441
Mly113I GGCGCC 1 cut(s) 205
MnlI CCTC 5 cut(s) 403, 542, 612, 622, 692
Mox20I TGGCCA 2 cut(s) 155, 441
Mph1103I ATGCAT 1 cut(s) 583
MroXI GAANNNNTTC 1 cut(s) 300
MscI TGGCCA 2 cut(s) 155, 441
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 2 cut(s) 155, 441
Mva1269I GAATGC 1 cut(s) 744
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 4 cut(s) 97, 314, 344, 545
NarI GGCGCC 1 cut(s) 205
NdeII GATC 2 cut(s) 132, 452
NheI GCTAGC 1 cut(s) 733
NlaIII CATG 3 cut(s) 345, 480, 598
NlaIV GGNNCC 4 cut(s) 21, 206, 414, 600
NsiI ATGCAT 1 cut(s) 583
NspI RCATGY 2 cut(s) 345, 480
PaeI GCATGC 1 cut(s) 345
PctI GAATGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 142, 296
PkrI GCNGC 6 cut(s) 102, 337, 340, 475, 547, 655
PluTI GGCGCC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
PspN4I GGNNCC 4 cut(s) 21, 206, 414, 600
PspPI GGNCC 2 cut(s) 19, 413
PspPPI RGGWCCY 1 cut(s) 19
PstI CTGCAG 2 cut(s) 105, 541
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 452
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 6 cut(s) 101, 336, 339, 474, 546, 654
Sau3AI GATC 2 cut(s) 132, 452
Sau96I GGNCC 2 cut(s) 19, 413
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 4 cut(s) 186, 370, 557, 568
SfcI CTRYAG 3 cut(s) 101, 537, 552
SfoI GGCGCC 1 cut(s) 206
SinI GGWCC 2 cut(s) 19, 413
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SphI GCATGC 1 cut(s) 345
Sse9I AATT 8 cut(s) 171, 239, 357, 427, 463, 510, 679, 751
SsiI CCGC 1 cut(s) 54
SspDI GGCGCC 1 cut(s) 204
SspMI CTAG 3 cut(s) 450, 726, 734
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 4 cut(s) 88, 406, 505, 556
TaqI TCGA 2 cut(s) 135, 604
TasI AATT 8 cut(s) 171, 239, 357, 427, 463, 510, 679, 751
TfiI GAWTC 2 cut(s) 142, 296
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 546, 561, 746
TseI GCWGC 6 cut(s) 100, 335, 338, 473, 545, 653
TspDTI ATGAA 2 cut(s) 351, 440
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 3 cut(s) 546, 561, 746
VpaK11BI GGWCC 2 cut(s) 19, 413
XapI RAATTY 3 cut(s) 171, 427, 463
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 2 cut(s) 345, 480
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 450, 726, 734
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.