FvH4_4g17970
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002451
Physical Location & Seq
Forward (+)
21931941 .. 21932560
620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17970.t1

Sequence Viewer

Length: 381 bp
ATGGATGAGAACAACAAGGAGAAGAAGGGTTTCATCACCGAAGAAGATGTCGCCACTCTCTTACAGAGGTACACGGCAACAACGATACTGGCACTGCTCCAGGAAGTAGCACACCTATCGCAGTCAGAGAGGATCGGTTGGGATTGGTTGGTGGCCAAGACTACTACAGGGATCACAAATGCCAGAGATGACTACGAGTATAATGTGGAAGTCGCTCCTCCTGTTACTGTCCAAACTTCAACAGAGGCCGCAGCATGTGGGAAAGTCCTTATAGCTTCTAGTTTACCATGCGACCCAAGTCATCTGAATGCAAAAGCCGGAGGAGATCATGCAAATAAACAGGCTATGACTCCTCAGAGGAAAAGGCAGAAGGCGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

127

Amino Acids

13.78

Weight (kDa)

5.89

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 249, 374
AclWI GGATC 2 cut(s) 140, 179
AcoI YGGCCR 1 cut(s) 153
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 2 cut(s) 140, 179
AoxI GGCC 2 cut(s) 153, 246
ApeKI GCWGC 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp700I GAANNNNTTC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 28
BalI TGGCCA 1 cut(s) 155
BbvI GCAGC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 2 cut(s) 249, 252
BlsI GCNGC 2 cut(s) 250, 253
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 3 cut(s) 207, 336, 342
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 155, 248
BsiSI CCGG 1 cut(s) 318
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 2 cut(s) 155, 248
Bsp143I GATC 3 cut(s) 132, 171, 325
BspACI CCGC 2 cut(s) 249, 374
BspANI GGCC 2 cut(s) 155, 248
BspCNI CTCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 140, 179
BsrI ACTGG 1 cut(s) 93
BssMI GATC 3 cut(s) 132, 171, 325
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 135, 174, 328
BstMBI GATC 3 cut(s) 132, 171, 325
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 258
BstPAI GACNNNNGTC 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 155, 248
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 92
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 255, 288, 329
CviJI RGCY 5 cut(s) 155, 248, 275, 317, 344
CviKI_1 RGCY 5 cut(s) 155, 248, 275, 317, 344
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 354
DpnI GATC 3 cut(s) 134, 173, 327
DpnII GATC 3 cut(s) 132, 171, 325
EaeI YGGCCR 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 3 cut(s) 258, 291, 332
FaiI YATR 6 cut(s) 201, 256, 272, 289, 330, 347
FatI CATG 3 cut(s) 254, 287, 328
Fnu4HI GCNGC 2 cut(s) 249, 252
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 249, 252
FspBI CTAG 1 cut(s) 279
GluI GCNGC 2 cut(s) 249, 252
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 155, 248
HapII CCGG 1 cut(s) 318
Hin1II CATG 3 cut(s) 258, 291, 332
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 72, 284
Hpy188I TCNGA 3 cut(s) 127, 306, 357
Hpy8I GTNNAC 2 cut(s) 72, 284
HpyAV CCTTC 2 cut(s) 19, 364
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 311, 332
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 3 cut(s) 258, 291, 332
Kzo9I GATC 3 cut(s) 132, 171, 325
LmnI GCTCC 2 cut(s) 102, 220
LpnPI CCDG 8 cut(s) 74, 86, 113, 153, 196, 234, 326, 331
Lsp1109I GCAGC 1 cut(s) 263
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 134, 173, 327
MboI GATC 3 cut(s) 132, 171, 325
MboII GAAGA 3 cut(s) 34, 53, 56
MlsI TGGCCA 1 cut(s) 155
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 7 cut(s) 60, 123, 228, 238, 314, 351, 363
Mox20I TGGCCA 1 cut(s) 155
MroXI GAANNNNTTC 1 cut(s) 29
MscI TGGCCA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 313
MvaI CCWGG 1 cut(s) 101
NdeII GATC 3 cut(s) 132, 171, 325
NlaIII CATG 3 cut(s) 258, 291, 332
NspI RCATGY 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PctI GAATGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 2 cut(s) 250, 253
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PshAI GACNNNNGTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 2 cut(s) 249, 252
Sau3AI GATC 3 cut(s) 132, 171, 325
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 101
SetI ASST 3 cut(s) 71, 117, 277
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 306
SsiI CCGC 2 cut(s) 249, 374
SspMI CTAG 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 229
TauI GCSGC 1 cut(s) 251
TscAI CASTG 1 cut(s) 99
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 22
TspRI CASTG 1 cut(s) 99
XceI RCATGY 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.