Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

17423267 .. 17424843

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCTAACATAACAGCTAATACAATTGGCACTGCTGGGACAAGTACACACAGCAAGCTTGCTGGAACAAATGCAACTAGTAACTCTCTGCATTTTACTACTGCTGAAGCTAAACTGCAGTCCCAAAAAGGCCTTAACCCAGTGAAAGCTGAAGCAAAACCGCAGTCCCAGGAATGCCTTAACCCAGCAAAAACATATCAAATGGGATTGTCAGGTTCCACGACAAAAGCTCCAGTGATCGCCAAAAAAACTATACCGAAGCTTACTGATAGTATGGTAAGAGCCGCTGCGGTTGCTGCTGGGGCACGCATTGCTTTTCCTTCGGATGCTGCATCACTTCTCAAGGCTGCTCAGGCAAAGAATGCTGTCCATATCATGCCTACGGTTGGTTCTTCTACCCAATCAGTTAAACCTGGTGGCATGTCTACCCACTCAGAACTTCCTCCTAATGTACATATACTGCATAGCAGCTCGGTTGCTACGCCACTTTCGACCCCTTCATCCACTGCTGCCACACCTAGCACCACACGCCCTCGGTCTTCAAAAGTTCTTCCTCAGGCAAGTCAGCACACTCCAACTAAAGACGCAATGTTATCCAGACAGACCAATGGCGTTAGCTGTAACCTGGATGCTGAGCAGGTCCAAGATGGAGCAGTTATCTCTAGGGATGGACCGAATGACCAAGGTCAAAAGGATAAAAGGGATTCACCTGACCAGAAAGCTGAGTCAAAAAATTTATCAACTAATGCTGAAAAACCTGTTGATACTCTGAAGATTGAAAGTGATGAGACCGATAGTGCTGTCACAGGTGTACAAGCTGAAGAGAGAAAAAGTGCAAAAGATAATGGGCTTCCGCGTTCATCTGTTAATGTAGGAGCCAGTGACCCATCTGTAGTTGATGATTGTGAAAACCGAAGCGCAAGTGAGAAGCAGACAGATCTTGCCATTGAAACAGATGGATGCAAGGGAAAACAGGTCATAAGCAAAGAGGAGGGTGACATTAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

337

Amino Acids

34.93

Weight (kDa)

8.24

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	425
AccII	CGCG	1 cut(s)	856
AciI	CCGC	4 cut(s)	161, 285, 290, 854
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	4 cut(s)	126, 171, 791, 840
AfaI	GTAC	3 cut(s)	46, 453, 813
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	543, 779, 950
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	3 cut(s)	168, 412, 624
Alw26I	GTCTC	1 cut(s)	782
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	6 cut(s)	287, 296, 329, 347, 468, 509
ApoI	RAATTY	1 cut(s)	733
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	2 cut(s)	640, 671
AsuHPI	GGTGA	2 cut(s)	699, 1007
AvaII	GGWCC	2 cut(s)	640, 671
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	274, 283, 316, 334, 480, 496
BccI	CCATC	4 cut(s)	641, 662, 895, 950
BciT130I	CCWGG	3 cut(s)	170, 414, 626
BcoDI	GTCTC	1 cut(s)	782
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	4 cut(s)	78, 519, 663, 1009
BfmI	CTRYAG	2 cut(s)	116, 891
BfuAI	ACCTGC	1 cut(s)	628
BglII	AGATCT	2 cut(s)	937, 1005
BisI	GCNGC	7 cut(s)	285, 288, 297, 330, 348, 469, 510
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	7 cut(s)	286, 289, 298, 331, 349, 470, 511
Bme1390I	CCNGG	3 cut(s)	170, 414, 626
Bme18I	GGWCC	2 cut(s)	640, 671
BmgT120I	GGNCC	2 cut(s)	640, 671
BmiI	GGNNCC	2 cut(s)	217, 877
BmrFI	CCNGG	3 cut(s)	170, 414, 626
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	4 cut(s)	316, 341, 619, 950
BmuI	ACTGGG	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	168, 533, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	3 cut(s)	140, 233, 879
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	2 cut(s)	309, 594
BseBI	CCWGG	3 cut(s)	170, 414, 626
BseDI	CCNNGG	3 cut(s)	168, 533, 682
BseGI	GGATG	5 cut(s)	331, 500, 634, 673, 965
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMI	GCAATG	2 cut(s)	309, 594
BseMII	CTCAG	5 cut(s)	365, 447, 569, 624, 714
BseNI	ACTGG	3 cut(s)	140, 233, 879
BseRI	GAGGAG	1 cut(s)	1004
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	6 cut(s)	274, 283, 316, 334, 480, 496
BseYI	CCCAGC	3 cut(s)	35, 184, 299
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	52, 106, 151
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	782
BsmFI	GGGAC	3 cut(s)	52, 106, 151
BsmI	GAATGC	2 cut(s)	179, 367
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	782
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp1407I	TGTACA	2 cut(s)	451, 811
Bsp143I	GATC	3 cut(s)	237, 937, 1005
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	4 cut(s)	161, 285, 290, 854
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	364, 446, 568, 625, 715
BspFNI	CGCG	1 cut(s)	856
BspLI	GGNNCC	2 cut(s)	217, 877
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	782
BsrDI	GCAATG	2 cut(s)	309, 594
BsrGI	TGTACA	2 cut(s)	451, 811
BsrI	ACTGG	3 cut(s)	140, 233, 879
BssECI	CCNNGG	3 cut(s)	168, 533, 682
BssMI	GATC	3 cut(s)	237, 937, 1005
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	3 cut(s)	170, 414, 626
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	816
BstAPI	GCANNNNNTGC	2 cut(s)	311, 362
BstAUI	TGTACA	2 cut(s)	451, 811
BstC8I	GCNNGC	3 cut(s)	56, 60, 307
BstDEI	CTNAG	5 cut(s)	351, 433, 555, 633, 723
BstF5I	GGATG	5 cut(s)	331, 500, 634, 673, 965
BstFNI	CGCG	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	3 cut(s)	240, 940, 1008
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	3 cut(s)	237, 937, 1005
BstMWI	GCNNNNNNNGC	7 cut(s)	293, 296, 302, 311, 353, 362, 528
BstNI	CCWGG	3 cut(s)	170, 414, 626
BstNSI	RCATGY	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	684
BstSCI	CCNGG	3 cut(s)	168, 412, 624
BstSFI	CTRYAG	2 cut(s)	116, 891
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	6 cut(s)	274, 283, 316, 334, 480, 496
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	937, 1005
BstYI	RGATCY	2 cut(s)	937, 1005
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	331, 500, 634, 673, 965
BtsI	GCAGTG	2 cut(s)	30, 504
BtsIMutI	CAGTG	5 cut(s)	30, 147, 240, 504, 886
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	56, 60, 307
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	2 cut(s)	640, 671
CseI	GACGC	1 cut(s)	593
CsiI	ACCWGGT	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	45, 452, 812
CviAII	CATG	2 cut(s)	376, 421
CviQI	GTAC	3 cut(s)	45, 452, 812
DdeI	CTNAG	5 cut(s)	351, 433, 555, 633, 723
DpnI	GATC	3 cut(s)	239, 939, 1007
DpnII	GATC	3 cut(s)	237, 937, 1005
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	682
Eco147I	AGGCCT	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	782
Eco47I	GGWCC	2 cut(s)	640, 671
Eco57I	CTGAAG	4 cut(s)	126, 171, 791, 840
Eco81I	CCTNAGG	1 cut(s)	555
EcoRII	CCWGG	3 cut(s)	168, 412, 624
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	2 cut(s)	379, 424
FaqI	GGGAC	3 cut(s)	52, 106, 151
FatI	CATG	2 cut(s)	375, 420
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	7 cut(s)	285, 288, 297, 330, 348, 469, 510
FokI	GGATG	5 cut(s)	338, 487, 641, 680, 972
Fsp4HI	GCNGC	7 cut(s)	285, 288, 297, 330, 348, 469, 510
FspBI	CTAG	4 cut(s)	78, 519, 663, 1009
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	7 cut(s)	285, 288, 297, 330, 348, 469, 510
GsaI	CCCAGC	3 cut(s)	39, 188, 303
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	2 cut(s)	379, 424
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	2 cut(s)	56, 260
HinfI	GANTC	2 cut(s)	704, 725
HphI	GGTGA	2 cut(s)	699, 1007
Hpy166II	GTNNAC	3 cut(s)	47, 426, 812
Hpy188I	TCNGA	3 cut(s)	325, 436, 771
Hpy188III	TCNNGA	1 cut(s)	597
Hpy8I	GTNNAC	3 cut(s)	47, 426, 812
HpyAV	CCTTC	2 cut(s)	330, 507
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	7 cut(s)	74, 91, 118, 332, 463, 836, 963
HpyF10VI	GCNNNNNNNGC	7 cut(s)	293, 296, 302, 311, 353, 362, 528
HpyF3I	CTNAG	5 cut(s)	351, 433, 555, 633, 723
Hsp92II	CATG	2 cut(s)	379, 424
HspAI	GCGC	1 cut(s)	918
Kzo9I	GATC	3 cut(s)	237, 937, 1005
LmnI	GCTCC	3 cut(s)	235, 650, 875
Lsp1109I	GCAGC	6 cut(s)	274, 283, 316, 334, 480, 496
LweI	GCATC	4 cut(s)	316, 341, 619, 950
MabI	ACCWGGT	1 cut(s)	412
MaeI	CTAG	4 cut(s)	78, 519, 663, 1009
MaeIII	GTNAC	5 cut(s)	80, 620, 802, 881, 995
MalI	GATC	3 cut(s)	239, 939, 1007
MboI	GATC	3 cut(s)	237, 937, 1005
MboII	GAAGA	5 cut(s)	384, 531, 542, 784, 833
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	2 cut(s)	937, 1005
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	24, 733
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	5 cut(s)	453, 543, 564, 982, 985
MseI	TTAA	5 cut(s)	135, 180, 408, 867, 1002
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	3 cut(s)	170, 414, 626
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	2 cut(s)	179, 367
MvaI	CCWGG	3 cut(s)	170, 414, 626
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	7 cut(s)	293, 296, 302, 311, 353, 362, 528
NdeII	GATC	3 cut(s)	237, 937, 1005
NlaIII	CATG	2 cut(s)	379, 424
NlaIV	GGNNCC	2 cut(s)	217, 877
NmuCI	GTSAC	3 cut(s)	802, 881, 995
NspI	RCATGY	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PctI	GAATGC	2 cut(s)	179, 367
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	7 cut(s)	286, 289, 298, 331, 349, 470, 511
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PshAI	GACNNNNGTC	1 cut(s)	684
Psp6I	CCWGG	3 cut(s)	168, 412, 624
PspFI	CCCAGC	3 cut(s)	35, 184, 299
PspGI	CCWGG	3 cut(s)	168, 412, 624
PspN4I	GGNNCC	2 cut(s)	217, 877
PspPI	GGNCC	2 cut(s)	640, 671
PstI	CTGCAG	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	937, 1005
RsaI	GTAC	3 cut(s)	46, 453, 813
RsaNI	GTAC	3 cut(s)	45, 452, 812
SaqAI	TTAA	5 cut(s)	135, 180, 408, 867, 1002
SatI	GCNGC	7 cut(s)	285, 288, 297, 330, 348, 469, 510
Sau3AI	GATC	3 cut(s)	237, 937, 1005
Sau96I	GGNCC	2 cut(s)	640, 671
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	3 cut(s)	170, 414, 626
SduI	GDGCHC	1 cut(s)	307
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	4 cut(s)	316, 341, 619, 950
SfcI	CTRYAG	2 cut(s)	116, 891
SinI	GGWCC	2 cut(s)	640, 671
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	2 cut(s)	24, 733
SseBI	AGGCCT	1 cut(s)	132
SsiI	CCGC	4 cut(s)	161, 285, 290, 854
SspMI	CTAG	4 cut(s)	78, 519, 663, 1009
StuI	AGGCCT	1 cut(s)	132
StyD4I	CCNGG	3 cut(s)	168, 412, 624
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	1 cut(s)	491
TaqII	GACCGA	3 cut(s)	525, 688, 806
TasI	AATT	2 cut(s)	24, 733
TatI	WGTACW	3 cut(s)	44, 451, 811
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	5 cut(s)	135, 180, 408, 867, 1002
Tru9I	TTAA	5 cut(s)	135, 180, 408, 867, 1002
TscAI	CASTG	5 cut(s)	37, 147, 240, 511, 886
TseFI	GTSAC	3 cut(s)	802, 881, 995
TseI	GCWGC	6 cut(s)	287, 296, 329, 347, 468, 509
Tsp45I	GTSAC	3 cut(s)	802, 881, 995
TspDTI	ATGAA	2 cut(s)	489, 849
TspRI	CASTG	5 cut(s)	37, 147, 240, 511, 886
VpaK11BI	GGWCC	2 cut(s)	640, 671
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	4 cut(s)	78, 519, 663, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.