Rmu_sc0004498.1_g000008
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004498.1
Physical Location & Seq
Reverse (-)
43174 .. 49499
6326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004498.1_g000008.1.cds

Sequence Viewer

Length: 1701 bp
atggggtttcttggcaggtacacagcgacgacgatactggcattgctgcaggaagtggcacacttgttgcagtcggagaagatcgattgggataagttggtggccaatactacaactgggattacaaatgctagagagtttcagatgctttggcgacatttggcttatagggaacctttgcctgacaaattcgatgatggagctcggcctcaggatgtagatagtgattacgaatatgaagtggaagttgctcctcctgttagcggtgaagcttcaacagaggctgcagcatgtgtgaaggtccttatggcttctggtctaccaagtgattctagtcatctgaatggcacaacggtggaggctccattgacaataaatatacctaatggccagtcatctaaaacatatgaaccatctgcttcagcaaaaggcatgaacattacagttccagtttctattcagaaacagaccctccctgcaacgacaactactgcagcagcaaaagctgaaggagatgatgcaaatagatcaactagcaatatcatggctcctcggaagaagagaaagaagtggacagaggaggaggatttggaactggtctctgctgtgaacatatatggtgaaggaaattggactcaaatcgtaaaagcaaacttcaaaggggacagaactgctaatcagctatctcagagatggggtattgttaagaagcggcaaaaaaagttgggtgtgggagaaggaggcacaccgtgcattaaaaaagaggcattgctggcagctcaccaggcaataacccattttttagataatgggccgaatagagcatctattacagtgggcactgtgggaacaaatgcaaacggcacatctgctgaaacaaatgcgaacagtaggtctggtgtaacaaatggaatacgcaactctgggctgcatactactactgctgaaggccttaatgcaaaaaaaccaaatcggataggatcattcggttcgactccaaaaggtcgagttacctccaagaaaaccttgccaaagtctaatatgaatccagatatcataagagcaactgcagttgctgctggggcacgcattgtcacgcagtcagatgctgaactgcttaaggctgctgctcaagcaaagaacactatccatatcatgcctcaaacagggggttctatcaagtcattgacacctggtggcttatccattaaatcagagcctcatcctactgtgcatcatattcgtactggcacggctgcaacactgccttccacccatccacccactagacaccctgggtccttaaaagttgtatcccagacaagtcaacaagctttgaagattgacacatccagaaagatcactggggttaacagtagccctggtgctgaagtcttacgaaagcaggtccaaaatgaagtactccctggcagtggacaggttcaagaaggtaagctagagtcaccaaagcagaaagctgagtcagaaagtttattaaccaatgctcagaatcttgctggttcattacacactaagaaagatgggagtaatgataaagcagtaacaggtgaagagagacggggtagtataggaggaggtgatgatccatcagcagtaaatggtgaagaccaaaacacaacactgaaacggacaacagatgtttctgaccatgatcttaagcaaggaggaggcagccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

59.97

Weight (kDa)

9.28

Isoelectric Point (pI)

33.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 6, 1396
AccI GTMKAC 1 cut(s) 319
AciI CCGC 2 cut(s) 264, 712
AclWI GGATC 2 cut(s) 988, 1598
AcoI YGGCCR 2 cut(s) 102, 388
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 4 cut(s) 405, 528, 966, 1410
AdeI CACNNNGTG 2 cut(s) 750, 1196
AfaI GTAC 3 cut(s) 20, 1246, 1422
AfiI CCNNNNNNNGG 3 cut(s) 263, 1166, 1433
AflII CTTAAG 2 cut(s) 1118, 1676
AgsI TTSAA 4 cut(s) 276, 658, 1339, 1445
AjnI CCWGG 5 cut(s) 783, 1192, 1294, 1381, 1426
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 8 cut(s) 203, 272, 506, 682, 779, 1334, 1456, 1478
AluI AGCT 8 cut(s) 203, 272, 506, 682, 779, 1334, 1456, 1478
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 604, 1570
AlwI GGATC 2 cut(s) 988, 1598
AlwNI CAGNNNCTG 3 cut(s) 284, 1076, 1109
AoxI GGCC 5 cut(s) 102, 206, 388, 812, 949
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AspS9I GGNCC 4 cut(s) 301, 812, 1299, 1408
AsuHPI GGTGA 7 cut(s) 278, 632, 773, 1455, 1580, 1610, 1634
AvaII GGWCC 3 cut(s) 301, 1299, 1408
AxyI CCTNAGG 1 cut(s) 210
BaeGI GKGCMC 2 cut(s) 842, 1087
BalI TGGCCA 2 cut(s) 104, 390
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 1632
Bbv12I GWGCWC 1 cut(s) 205
BccI CCATC 6 cut(s) 191, 421, 687, 1284, 1535, 1615
BceAI ACGGC 2 cut(s) 877, 1269
BcgI CGANNNNNNTGC 2 cut(s) 1223, 1257
BciT130I CCWGG 5 cut(s) 785, 1194, 1296, 1383, 1428
BciVI GTATCC 1 cut(s) 1324
BcoDI GTCTC 2 cut(s) 604, 1570
BfaI CTAG 5 cut(s) 132, 333, 534, 1287, 1457
BfmI CTRYAG 4 cut(s) 47, 285, 492, 1068
BfrI CTTAAG 2 cut(s) 1118, 1676
BfuAI ACCTGC 2 cut(s) 6, 1396
BfuI GTATCC 1 cut(s) 1324
BmcAI AGTACT 1 cut(s) 1422
Bme1390I CCNGG 5 cut(s) 785, 1194, 1296, 1383, 1428
Bme18I GGWCC 3 cut(s) 301, 1299, 1408
BmgT120I GGNCC 4 cut(s) 301, 812, 1299, 1408
BmiI GGNNCC 4 cut(s) 174, 363, 549, 1300
BmrFI CCNGG 5 cut(s) 785, 1194, 1296, 1383, 1428
BmrI ACTGGG 2 cut(s) 126, 1374
BmsI GCATC 5 cut(s) 135, 508, 833, 1096, 1243
BmuI ACTGGG 2 cut(s) 126, 1374
BpiI GAAGAC 1 cut(s) 1632
BpuEI CTTGAG 1 cut(s) 1116
Bsa29I ATCGAT 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 5 cut(s) 551, 1294, 1295, 1381, 1426
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 3 cut(s) 263, 1166, 1433
Bse1I ACTGG 7 cut(s) 42, 121, 391, 449, 600, 1252, 1369
Bse21I CCTNAGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 41, 767
BseBI CCWGG 5 cut(s) 785, 1194, 1296, 1383, 1428
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 5 cut(s) 551, 1294, 1295, 1381, 1426
BseGI GGATG 4 cut(s) 220, 1222, 1276, 1349
BseLI CCNNNNNNNGG 3 cut(s) 263, 1166, 1433
BseMI GCAATG 2 cut(s) 41, 767
BseMII CTCAG 4 cut(s) 224, 701, 1470, 1520
BseNI ACTGG 7 cut(s) 42, 121, 391, 449, 600, 1252, 1369
BseRI GAGGAG 6 cut(s) 243, 540, 593, 596, 1608, 1701
BseSI GKGCMC 2 cut(s) 842, 1087
BseYI CCCAGC 1 cut(s) 1079
BshFI GGCC 5 cut(s) 104, 208, 390, 814, 951
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 205
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 3 cut(s) 263, 1166, 1433
BsmAI GTCTC 2 cut(s) 604, 1570
BsmBI CGTCTC 1 cut(s) 1570
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 5 cut(s) 104, 208, 390, 814, 951
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 3 cut(s) 205, 842, 1087
Bsp143I GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
BspACI CCGC 2 cut(s) 264, 712
BspANI GGCC 5 cut(s) 104, 208, 390, 814, 951
BspCNI CTCAG 4 cut(s) 223, 700, 1471, 1519
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 174, 363, 549, 1300
BspMAI CTGCAG 4 cut(s) 51, 289, 496, 1072
BspMI ACCTGC 2 cut(s) 6, 1396
BspPI GGATC 2 cut(s) 988, 1598
BspTI CTTAAG 2 cut(s) 1118, 1676
BspTNI GGTCTC 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 41, 767
BsrI ACTGG 7 cut(s) 42, 121, 391, 449, 600, 1252, 1369
BssECI CCNNGG 5 cut(s) 551, 1294, 1295, 1381, 1426
BssMI GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
Bst2UI CCWGG 5 cut(s) 785, 1194, 1296, 1383, 1428
Bst4CI ACNGT 8 cut(s) 355, 445, 750, 835, 844, 890, 1231, 1376
Bst6I CTCTTC 2 cut(s) 554, 1566
BstAFI CTTAAG 2 cut(s) 1118, 1676
BstAPI GCANNNNNTGC 2 cut(s) 750, 1076
BstC8I GCNNGC 2 cut(s) 774, 1087
BstDEI CTNAG 5 cut(s) 210, 687, 1479, 1506, 1533
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 4 cut(s) 220, 1222, 1276, 1349
BstKTI GATC 6 cut(s) 84, 530, 983, 1362, 1606, 1675
BstMAI GTCTC 2 cut(s) 604, 1570
BstMBI GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
BstMWI GCNNNNNNNGC 7 cut(s) 503, 750, 773, 785, 1076, 1082, 1133
BstNI CCWGG 5 cut(s) 785, 1194, 1296, 1383, 1428
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 5 cut(s) 783, 1192, 1294, 1381, 1426
BstSFI CTRYAG 4 cut(s) 47, 285, 492, 1068
BstSLI GKGCMC 2 cut(s) 842, 1087
BstV2I GAAGAC 1 cut(s) 1632
Bsu15I ATCGAT 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 210
BsuI GTATCC 1 cut(s) 1324
BsuRI GGCC 5 cut(s) 104, 208, 390, 814, 951
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 4 cut(s) 220, 1222, 1276, 1349
BtsI GCAGTG 2 cut(s) 1262, 1438
BtsIMutI CAGTG 6 cut(s) 840, 840, 1262, 1362, 1438, 1640
BveI ACCTGC 2 cut(s) 6, 1396
Cac8I GCNNGC 2 cut(s) 774, 1087
CaiI CAGNNNCTG 3 cut(s) 284, 1076, 1109
Cfr13I GGNCC 4 cut(s) 301, 812, 1299, 1408
ClaI ATCGAT 1 cut(s) 84
CsiI ACCWGGT 1 cut(s) 1192
Csp6I GTAC 3 cut(s) 19, 1245, 1421
CviAII CATG 5 cut(s) 291, 433, 544, 1156, 1670
CviQI GTAC 3 cut(s) 19, 1245, 1421
DdeI CTNAG 5 cut(s) 210, 687, 1479, 1506, 1533
DpnI GATC 6 cut(s) 83, 529, 982, 1361, 1605, 1674
DpnII GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
DraIII CACNNNGTG 2 cut(s) 750, 1196
EaeI YGGCCR 2 cut(s) 102, 388
Eam1104I CTCTTC 2 cut(s) 554, 1566
EarI CTCTTC 2 cut(s) 554, 1566
Ecl136II GAGCTC 1 cut(s) 203
Eco147I AGGCCT 1 cut(s) 951
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 1054
Eco47I GGWCC 3 cut(s) 301, 1299, 1408
Eco53kI GAGCTC 1 cut(s) 203
Eco57I CTGAAG 4 cut(s) 405, 528, 966, 1410
Eco81I CCTNAGG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoO109I RGGNCCY 2 cut(s) 301, 1299
EcoRII CCWGG 5 cut(s) 783, 1192, 1294, 1381, 1426
EcoRV GATATC 1 cut(s) 1054
EcoT38I GRGCYC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 1570
FaeI CATG 5 cut(s) 294, 436, 547, 1159, 1673
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FaqI GGGAC 1 cut(s) 677
FatI CATG 5 cut(s) 290, 432, 543, 1155, 1669
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 319
FokI GGATG 4 cut(s) 227, 1209, 1263, 1336
FriOI GRGCYC 1 cut(s) 205
FspBI CTAG 5 cut(s) 132, 333, 534, 1287, 1457
GsaI CCCAGC 1 cut(s) 1083
HaeIII GGCC 5 cut(s) 104, 208, 390, 814, 951
Hin1II CATG 5 cut(s) 294, 436, 547, 1159, 1673
HincII GTYRAC 2 cut(s) 1328, 1372
HindII GTYRAC 2 cut(s) 1328, 1372
HindIII AAGCTT 2 cut(s) 270, 1332
HinfI GANTC 7 cut(s) 329, 634, 994, 1045, 1460, 1481, 1510
HpaI GTTAAC 1 cut(s) 1372
HphI GGTGA 7 cut(s) 278, 632, 773, 1455, 1580, 1610, 1634
Hpy166II GTNNAC 7 cut(s) 21, 320, 573, 610, 1328, 1372, 1436
Hpy188III TCNNGA 4 cut(s) 212, 1049, 1353, 1445
Hpy8I GTNNAC 7 cut(s) 21, 320, 573, 610, 1328, 1372, 1436
Hpy99I CGWCG 2 cut(s) 31, 34
HpyAV CCTTC 7 cut(s) 292, 503, 617, 731, 941, 1278, 1442
HpyCH4III ACNGT 8 cut(s) 355, 445, 750, 835, 844, 890, 1231, 1376
HpyF10VI GCNNNNNNNGC 7 cut(s) 503, 750, 773, 785, 1076, 1082, 1133
HpyF3I CTNAG 5 cut(s) 210, 687, 1479, 1506, 1533
Hsp92II CATG 5 cut(s) 294, 436, 547, 1159, 1673
KspAI GTTAAC 1 cut(s) 1372
Kzo9I GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
LmnI GCTCC 4 cut(s) 200, 256, 367, 553
LweI GCATC 5 cut(s) 135, 508, 833, 1096, 1243
MabI ACCWGGT 1 cut(s) 1192
MaeI CTAG 5 cut(s) 132, 333, 534, 1287, 1457
MaeIII GTNAC 5 cut(s) 901, 1009, 1093, 1461, 1561
MalI GATC 6 cut(s) 83, 529, 982, 1361, 1605, 1674
MboI GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
MboII GAAGA 6 cut(s) 91, 568, 571, 1351, 1583, 1637
MhlI GDGCHC 3 cut(s) 205, 842, 1087
MlsI TGGCCA 2 cut(s) 104, 390
MluCI AATT 2 cut(s) 188, 628
MluNI TGGCCA 2 cut(s) 104, 390
MlyI GAGTC 4 cut(s) 628, 988, 1469, 1490
MmeI TCCRAC 1 cut(s) 54
Mox20I TGGCCA 2 cut(s) 104, 390
MscI TGGCCA 2 cut(s) 104, 390
MslI CAYNNNNRTG 2 cut(s) 342, 353
Msp20I TGGCCA 2 cut(s) 104, 390
MspCI CTTAAG 2 cut(s) 1118, 1676
MspR9I CCNGG 5 cut(s) 785, 1194, 1296, 1383, 1428
MvaI CCWGG 5 cut(s) 785, 1194, 1296, 1383, 1428
MwoI GCNNNNNNNGC 7 cut(s) 503, 750, 773, 785, 1076, 1082, 1133
NdeI CATATG 1 cut(s) 406
NdeII GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
NlaIII CATG 5 cut(s) 294, 436, 547, 1159, 1673
NlaIV GGNNCC 4 cut(s) 174, 363, 549, 1300
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 1093, 1461
NspI RCATGY 1 cut(s) 294
OliI CACNNNNGTG 1 cut(s) 353
PasI CCCWGGG 1 cut(s) 1295
PceI AGGCCT 1 cut(s) 951
PfeI GAWTC 3 cut(s) 329, 1045, 1510
PleI GAGTC 4 cut(s) 628, 988, 1468, 1489
PpsI GAGTC 4 cut(s) 628, 988, 1468, 1489
PpuMI RGGWCCY 2 cut(s) 301, 1299
Psp124BI GAGCTC 1 cut(s) 205
Psp5II RGGWCCY 2 cut(s) 301, 1299
Psp6I CCWGG 5 cut(s) 783, 1192, 1294, 1381, 1426
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 5 cut(s) 783, 1192, 1294, 1381, 1426
PspN4I GGNNCC 4 cut(s) 174, 363, 549, 1300
PspPI GGNCC 4 cut(s) 301, 812, 1299, 1408
PspPPI RGGWCCY 2 cut(s) 301, 1299
PstI CTGCAG 4 cut(s) 51, 289, 496, 1072
PstNI CAGNNNCTG 3 cut(s) 284, 1076, 1109
RsaI GTAC 3 cut(s) 20, 1246, 1422
RsaNI GTAC 3 cut(s) 19, 1245, 1421
RseI CAYNNNNRTG 2 cut(s) 342, 353
SacI GAGCTC 1 cut(s) 205
Sau3AI GATC 6 cut(s) 81, 527, 980, 1359, 1603, 1672
Sau96I GGNCC 4 cut(s) 301, 812, 1299, 1408
ScaI AGTACT 1 cut(s) 1422
SchI GAGTC 4 cut(s) 628, 988, 1469, 1490
ScrFI CCNGG 5 cut(s) 785, 1194, 1296, 1383, 1428
SduI GDGCHC 3 cut(s) 205, 842, 1087
SexAI ACCWGGT 1 cut(s) 1192
SfaNI GCATC 5 cut(s) 135, 508, 833, 1096, 1243
SfcI CTRYAG 4 cut(s) 47, 285, 492, 1068
SinI GGWCC 3 cut(s) 301, 1299, 1408
SmiMI CAYNNNNRTG 2 cut(s) 342, 353
SmlI CTYRAG 3 cut(s) 1118, 1131, 1676
SmoI CTYRAG 3 cut(s) 1118, 1131, 1676
Sse9I AATT 2 cut(s) 188, 628
SseBI AGGCCT 1 cut(s) 951
SsiI CCGC 2 cut(s) 264, 712
SspMI CTAG 5 cut(s) 132, 333, 534, 1287, 1457
SstI GAGCTC 1 cut(s) 205
StuI AGGCCT 1 cut(s) 951
StyD4I CCNGG 5 cut(s) 783, 1192, 1294, 1381, 1426
TaaI ACNGT 8 cut(s) 355, 445, 750, 835, 844, 890, 1231, 1376
TaqI TCGA 4 cut(s) 84, 192, 992, 1006
TasI AATT 2 cut(s) 188, 628
TatI WGTACW 1 cut(s) 1420
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 3 cut(s) 329, 1045, 1510
TscAI CASTG 6 cut(s) 840, 847, 1269, 1369, 1438, 1647
TseFI GTSAC 2 cut(s) 1093, 1461
Tsp45I GTSAC 2 cut(s) 1093, 1461
TspDTI ATGAA 6 cut(s) 252, 423, 449, 1058, 1431, 1512
TspGWI ACGGA 1 cut(s) 1663
TspRI CASTG 6 cut(s) 840, 847, 1269, 1369, 1438, 1647
Vha464I CTTAAG 2 cut(s) 1118, 1676
VpaK11BI GGWCC 3 cut(s) 301, 1299, 1408
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 1 cut(s) 188
XceI RCATGY 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 319
XspI CTAG 5 cut(s) 132, 333, 534, 1287, 1457
ZrmI AGTACT 1 cut(s) 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.