Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

47680224 .. 47682340

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1385800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGCAGTTCATTTCAAGCTATGCATGGCGATAGGTGGAAAAATATTAGGAAGAATAATCTAGACTTGAATGTTGGAGGCGGCTCAAGTAGTAAACTTTCAGAAGCACAGTTGGCAGCTCGTCATTCATTGTCCGTAGCCCTGAATATGCCTAACATCACAGCTAATACAATTGGCACCGCTGGGACAAGTACACACAGCAAGCTTGCTGGAACAAATGCAACTAGCAACTCTGTGCATTGTACTACTGCTGAAGCAAAACCGCAGTCCCAGCAAGGCCTTAACCCAGTGAAAACATATCAAACAGGATTGTCGGGTTCCACAACAAAAGCTCCAGTGATCGCCAAAAAGACTATACCGAAGCTTACTGATAGTATGGTAAGAGCCGCTGCGGTCGCTGCTGGGGCACGCATTGCTTTTCCTTCAGATGCTGCATCACTTCTCAAGGCTGCTCAGGCGAAGAATGCTGTCCATATCATGCCTACAAGTGGTTCTTCTACCCAATCTGTTAAACCTGGCGGCATGTCTACCCACTCAGAACTTCCCCCTAATGTACATATAATGCGTAGCAGCTCGGCTGCTACGCCACTTTCCACCCCTTCATCCACTGCTGCCACACCTGGCACCACACGCCCTCGGTCTTCAAAAGTTCTTCCTCAGGCAAGTCAGCACACTCCAACCAGTGACGCAATGTTATCCAGACAGACCAATGGTGTTAGCTGTAACCTGGATGCTGAGCCGGGCTGTGCTCCGACAGATCAGATCCAAGATGGAGCAGTGATCTCTAGGGATGGACCGAATGACCGAGTTCAAAAGGATAAATCACCTGACCAGAAAGCTCACTCAAAAAATTTGTCAACCAATGCTGAAAATCCCGTTGATTCACTGAAGGTCGAAAGTGATGAAACTGATAGTAAAGCTGTCACAGGTGTAAAAGCTGAAGAGAGAAAAAGTGCAAAAGATAATGAGATTCCGTGTTCATCTGCTAATGTAGGAGGCAGTGATCCATCTGCAGTTGACAGTTGTGAAACCGAAGCGCAAGTGAGAAGTACACAGATCTTCTCGCCATTGCAACAGATGGATGCAAGGGAAAACAGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

368

Amino Acids

38.06

Weight (kDa)

9.04

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	176, 623
AccI	GTMKAC	1 cut(s)	527
AciI	CCGC	6 cut(s)	81, 180, 263, 387, 392, 519
AclWI	GGATC	2 cut(s)	757, 998
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	4 cut(s)	273, 408, 908, 960
AfaI	GTAC	4 cut(s)	193, 244, 555, 1051
AfiI	CCNNNNNNNGG	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	17, 70, 645, 812
AjnI	CCWGG	3 cut(s)	514, 619, 726
Alw21I	GWGCWC	1 cut(s)	751
AlwI	GGATC	2 cut(s)	757, 998
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	8 cut(s)	116, 389, 398, 431, 449, 570, 578, 611
ApoI	RAATTY	1 cut(s)	850
ArsI	GACNNNNNNTTYG	4 cut(s)	251, 283, 839, 871
AspLEI	GCGC	1 cut(s)	1039
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	1 cut(s)	816
AvaII	GGWCC	1 cut(s)	794
AxyI	CCTNAGG	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	2 cut(s)	176, 623
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	8 cut(s)	128, 376, 385, 418, 436, 565, 582, 598
BccI	CCATC	4 cut(s)	764, 785, 1015, 1072
BciT130I	CCWGG	3 cut(s)	516, 621, 728
BcnI	CCSGG	1 cut(s)	741
BfaI	CTAG	3 cut(s)	62, 225, 786
BfmI	CTRYAG	1 cut(s)	1011
BglII	AGATCT	1 cut(s)	1056
BlpI	GCTNAGC	1 cut(s)	735
Bme1390I	CCNGG	4 cut(s)	516, 621, 728, 741
Bme18I	GGWCC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	3 cut(s)	178, 319, 625
BmrFI	CCNGG	4 cut(s)	516, 621, 728, 741
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	4 cut(s)	418, 443, 721, 1072
BmuI	ACTGGG	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	633
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	70, 428
BpuMI	CCSGG	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse1I	ACTGG	3 cut(s)	287, 335, 681
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	3 cut(s)	411, 696, 1067
BseBI	CCWGG	3 cut(s)	516, 621, 728
BseDI	CCNNGG	1 cut(s)	635
BseGI	GGATG	4 cut(s)	602, 736, 796, 1087
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMI	GCAATG	3 cut(s)	411, 696, 1067
BseMII	CTCAG	4 cut(s)	467, 549, 671, 726
BseNI	ACTGG	3 cut(s)	287, 335, 681
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	8 cut(s)	128, 376, 385, 418, 436, 565, 582, 598
BseYI	CCCAGC	3 cut(s)	182, 270, 401
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	2 cut(s)	176, 623
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	2 cut(s)	199, 253
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	199, 253
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	409, 751
Bsp1407I	TGTACA	1 cut(s)	553
Bsp143I	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	6 cut(s)	81, 180, 263, 387, 392, 519
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	4 cut(s)	466, 548, 670, 727
BspLI	GGNNCC	3 cut(s)	178, 319, 625
BspMAI	CTGCAG	1 cut(s)	1015
BspPI	GGATC	2 cut(s)	757, 998
BspT107I	GGYRCC	2 cut(s)	176, 623
BsrDI	GCAATG	3 cut(s)	411, 696, 1067
BsrGI	TGTACA	1 cut(s)	553
BsrI	ACTGG	3 cut(s)	287, 335, 681
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
Bst2UI	CCWGG	3 cut(s)	516, 621, 728
Bst4CI	ACNGT	2 cut(s)	111, 1022
Bst6I	CTCTTC	1 cut(s)	936
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	203, 207, 409
BstDEI	CTNAG	4 cut(s)	453, 535, 657, 735
BstF5I	GGATG	4 cut(s)	602, 736, 796, 1087
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	6 cut(s)	342, 760, 765, 783, 1006, 1059
BstMBI	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 271, 395, 398, 404, 413, 455, 464, 630
BstNI	CCWGG	3 cut(s)	516, 621, 728
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	4 cut(s)	514, 619, 726, 739
BstSFI	CTRYAG	1 cut(s)	1011
BstSLI	GKGCMC	1 cut(s)	409
BstV1I	GCAGC	8 cut(s)	128, 376, 385, 418, 436, 565, 582, 598
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	2 cut(s)	762, 1056
BstYI	RGATCY	2 cut(s)	762, 1056
Bsu36I	CCTNAGG	1 cut(s)	657
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	602, 736, 796, 1087
BtsI	GCAGTG	3 cut(s)	606, 783, 1006
BtsIMutI	CAGTG	7 cut(s)	294, 342, 606, 688, 783, 884, 1006
Cac8I	GCNNGC	3 cut(s)	203, 207, 409
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	1039
Cfr13I	GGNCC	1 cut(s)	794
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	4 cut(s)	192, 243, 554, 1050
CviAII	CATG	3 cut(s)	26, 478, 523
CviQI	GTAC	4 cut(s)	192, 243, 554, 1050
DdeI	CTNAG	4 cut(s)	453, 535, 657, 735
DpnI	GATC	6 cut(s)	341, 759, 764, 782, 1005, 1058
DpnII	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco147I	AGGCCT	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	4 cut(s)	273, 408, 908, 960
Eco81I	CCTNAGG	1 cut(s)	657
EcoRII	CCWGG	3 cut(s)	514, 619, 726
EcoT22I	ATGCAT	1 cut(s)	27
FaeI	CATG	3 cut(s)	29, 481, 526
FalI	AAGNNNNNCTT	2 cut(s)	478, 510
FaqI	GGGAC	2 cut(s)	199, 253
FatI	CATG	3 cut(s)	25, 477, 522
FblI	GTMKAC	1 cut(s)	527
FokI	GGATG	4 cut(s)	589, 743, 803, 1094
FspBI	CTAG	3 cut(s)	62, 225, 786
GlaI	GCGC	1 cut(s)	1038
GsaI	CCCAGC	3 cut(s)	186, 274, 405
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	740
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	1039
Hin1II	CATG	3 cut(s)	29, 481, 526
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	2 cut(s)	858, 1018
HindII	GTYRAC	2 cut(s)	858, 1018
HindIII	AAGCTT	2 cut(s)	203, 362
HinfI	GANTC	2 cut(s)	881, 970
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	1 cut(s)	816
Hpy166II	GTNNAC	6 cut(s)	95, 194, 528, 858, 1018, 1052
Hpy188I	TCNGA	5 cut(s)	103, 427, 538, 753, 762
Hpy188III	TCNNGA	2 cut(s)	62, 699
Hpy8I	GTNNAC	6 cut(s)	95, 194, 528, 858, 1018, 1052
HpyAV	CCTTC	3 cut(s)	432, 609, 883
HpyCH4III	ACNGT	2 cut(s)	111, 1022
HpyCH4V	TGCA	8 cut(s)	25, 221, 238, 434, 956, 1013, 1072, 1085
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 271, 395, 398, 404, 413, 455, 464, 630
HpyF3I	CTNAG	4 cut(s)	453, 535, 657, 735
Hsp92II	CATG	3 cut(s)	29, 481, 526
HspAI	GCGC	1 cut(s)	1037
Kzo9I	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
LmnI	GCTCC	3 cut(s)	337, 754, 773
Lsp1109I	GCAGC	8 cut(s)	128, 376, 385, 418, 436, 565, 582, 598
LweI	GCATC	4 cut(s)	418, 443, 721, 1072
MaeI	CTAG	3 cut(s)	62, 225, 786
MaeIII	GTNAC	3 cut(s)	683, 722, 922
MalI	GATC	6 cut(s)	341, 759, 764, 782, 1005, 1058
MboI	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
MboII	GAAGA	7 cut(s)	64, 472, 486, 633, 644, 953, 1051
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	762, 1056
MhlI	GDGCHC	2 cut(s)	409, 751
MluCI	AATT	2 cut(s)	171, 850
MmeI	TCCRAC	3 cut(s)	55, 701, 776
MnlI	CCTC	4 cut(s)	71, 645, 666, 989
Mph1103I	ATGCAT	1 cut(s)	27
MseI	TTAA	2 cut(s)	282, 510
MspA1I	CMGCKG	2 cut(s)	182, 389
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	4 cut(s)	516, 621, 728, 741
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	3 cut(s)	516, 621, 728
MwoI	GCNNNNNNNGC	9 cut(s)	113, 271, 395, 398, 404, 413, 455, 464, 630
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
NlaIII	CATG	3 cut(s)	29, 481, 526
NlaIV	GGNNCC	3 cut(s)	178, 319, 625
NmeAIII	GCCGAG	1 cut(s)	554
NmuCI	GTSAC	2 cut(s)	683, 922
NsiI	ATGCAT	1 cut(s)	27
NspI	RCATGY	1 cut(s)	526
PceI	AGGCCT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	2 cut(s)	881, 970
Psp6I	CCWGG	3 cut(s)	514, 619, 726
PspFI	CCCAGC	3 cut(s)	182, 270, 401
PspGI	CCWGG	3 cut(s)	514, 619, 726
PspN4I	GGNNCC	3 cut(s)	178, 319, 625
PspPI	GGNCC	1 cut(s)	794
PstI	CTGCAG	1 cut(s)	1015
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	2 cut(s)	762, 1056
RsaI	GTAC	4 cut(s)	193, 244, 555, 1051
RsaNI	GTAC	4 cut(s)	192, 243, 554, 1050
SaqAI	TTAA	2 cut(s)	282, 510
Sau3AI	GATC	6 cut(s)	339, 757, 762, 780, 1003, 1056
Sau96I	GGNCC	1 cut(s)	794
ScrFI	CCNGG	4 cut(s)	516, 621, 728, 741
SduI	GDGCHC	2 cut(s)	409, 751
SfaNI	GCATC	4 cut(s)	418, 443, 721, 1072
SfcI	CTRYAG	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	794
SmlI	CTYRAG	2 cut(s)	85, 443
SmoI	CTYRAG	2 cut(s)	85, 443
Sse9I	AATT	2 cut(s)	171, 850
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	6 cut(s)	81, 180, 263, 387, 392, 519
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	3 cut(s)	62, 225, 786
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	514, 619, 726, 739
TaaI	ACNGT	2 cut(s)	111, 1022
TaqI	TCGA	1 cut(s)	894
TaqII	GACCGA	3 cut(s)	627, 811, 819
TasI	AATT	2 cut(s)	171, 850
TatI	WGTACW	4 cut(s)	191, 242, 553, 1049
TauI	GCSGC	3 cut(s)	84, 389, 522
TfiI	GAWTC	2 cut(s)	881, 970
Tru1I	TTAA	2 cut(s)	282, 510
Tru9I	TTAA	2 cut(s)	282, 510
TscAI	CASTG	7 cut(s)	294, 342, 613, 688, 783, 891, 1006
TseFI	GTSAC	2 cut(s)	683, 922
TseI	GCWGC	8 cut(s)	116, 389, 398, 431, 449, 570, 578, 611
Tsp45I	GTSAC	2 cut(s)	683, 922
TspDTI	ATGAA	4 cut(s)	117, 591, 918, 969
TspGWI	ACGGA	2 cut(s)	124, 963
TspRI	CASTG	7 cut(s)	294, 342, 613, 688, 783, 891, 1006
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	1 cut(s)	61
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	3 cut(s)	62, 225, 786
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.