Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002451

Physical Location & Seq

Genomic Coordinates Reverse (-)

28397745 .. 28398068

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0291300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAAGAGCTCGAGCGGATTCAAGCTACAAACTCTCAAGCGGCTGCAATGGTGGCGCGATATCAATTATCGGAGACACCTAGAGGGCATGGTTCAAGACCTGGCCGTGCCCCAAATGTCGAAAGACATAGAGAAGTCCGAGGTCATTTTCTCCTGGAGGATTATTTTGTCGAACGTCCAGTGTACGACGAAGCAGGCTTTCGAAGGAGGTATAGAATGCAAACACATGTCTTCCAACGCATAATGGAGGATCTTTGCAACCTCGATAGTTTTTGGGGGCAAAAATCAGATGCCACTGGAAAAATGGGATTGCTTCCCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

107

Amino Acids

12.53

Weight (kDa)

6.92

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220
fragaria_vesca	FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820
malus_domestica	MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1
prunus_persica	Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1
pyrus_communis	pycom08g17100 pycom08g17280 pycom15g34620
rosa_chinensis	RchiOBHm_Chr7g0235501
rosa_laevigata	RLG00000001154
rosa_multiflora	Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225950
rosa_rugosa	Rorug07G0291300 Rorug07G0291400
rosa_samantha	Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900
rosa_wichuraiana	Rw7G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AccII	CGCG	1 cut(s)	58
AciI	CCGC	2 cut(s)	16, 41
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	103
AfaI	GTAC	1 cut(s)	185
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	23, 96
AjnI	CCWGG	2 cut(s)	100, 153
AluBI	AGCT	2 cut(s)	10, 26
AluI	AGCT	2 cut(s)	10, 26
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	58
AsuII	TTCGAA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	112
BanII	GRGCYC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	102, 155
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	2 cut(s)	42, 45
BlsI	GCNGC	2 cut(s)	43, 46
Bme1390I	CCNGG	2 cut(s)	102, 155
BmeT110I	CYCGRG	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	102, 155
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	179, 301
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	102, 155
BseDI	CCNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	179, 301
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	12, 112
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	2 cut(s)	16, 41
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	258
BspT104I	TTCGAA	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	179, 301
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	102, 155
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	102, 155
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	100, 153
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	186, 294
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	2 cut(s)	89, 227
CviJI	RGCY	5 cut(s)	10, 26, 44, 105, 198
CviKI_1	RGCY	5 cut(s)	10, 26, 44, 105, 198
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	100, 153
EcoRV	GATATC	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	2 cut(s)	92, 230
FaiI	YATR	5 cut(s)	90, 129, 213, 228, 242
FatI	CATG	2 cut(s)	88, 226
Fnu4HI	GCNGC	2 cut(s)	42, 45
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	42, 45
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	42, 45
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	92, 230
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	73, 140, 289
Hpy188III	TCNNGA	2 cut(s)	96, 317
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	3 cut(s)	47, 220, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	92, 230
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	87, 114, 140, 167, 180, 192, 282
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	175
MalI	GATC	1 cut(s)	252
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	17, 223
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	12, 112
MluCI	AATT	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	77, 134, 151, 201, 241, 272
MspR9I	CCNGG	2 cut(s)	102, 155
Mva1269I	GAATGC	1 cut(s)	222
MvaI	CCWGG	2 cut(s)	102, 155
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	92, 230
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	11
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	43, 46
PscI	ACATGT	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	100, 153
PspGI	CCWGG	2 cut(s)	100, 153
PspXI	VCTCGAGB	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	12
SatI	GCNGC	2 cut(s)	42, 45
Sau3AI	GATC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	102, 155
SduI	GDGCHC	2 cut(s)	12, 112
SetI	ASST	8 cut(s)	12, 28, 82, 103, 145, 178, 212, 264
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	11
SfuI	TTCGAA	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	11, 36
SmoI	CTYRAG	2 cut(s)	11, 36
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	16, 41
SspMI	CTAG	1 cut(s)	81
SstI	GAGCTC	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	100, 153
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	5 cut(s)	12, 120, 171, 202, 264
TasI	AATT	1 cut(s)	65
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	2 cut(s)	186, 301
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	2 cut(s)	186, 301
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	11
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.