SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G09710 AT1G58220 AT1G58220 |
| fragaria_vesca | FvH4_4g17970 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 FvH4_5g34820 |
| malus_domestica | MD08G1198900.v1.1 MD15G1385800.v1.1 MD15G1386000.v1.1 |
| prunus_persica | Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532600_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 Prupe.1G532700_v2.0.a1 |
| pyrus_communis | pycom08g17100 pycom08g17280 pycom15g34620 |
| rosa_chinensis | RchiOBHm_Chr7g0235501 |
| rosa_laevigata | RLG00000001154 |
| rosa_multiflora | Rmu_sc0002892.1_g000016 Rmu_sc0004498.1_g000008 Rmu_sc0039003.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00225950 |
| rosa_rugosa | Rorug07G0291300 Rorug07G0291400 |
| rosa_samantha | Rh7AG446400 Rh7BG418100 Rh7CG466300 Rh7DG434900 |
| rosa_wichuraiana | Rw7G037060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1090 |
| AccI | GTMKAC | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 406 |
| AclWI | GGATC | 2 cut(s) | 682, 1292 |
| AcoI | YGGCCR | 1 cut(s) | 82 |
| AcuI | CTGAAG | 4 cut(s) | 99, 222, 660, 1104 |
| AdeI | CACNNNGTG | 2 cut(s) | 444, 890 |
| AfaI | GTAC | 2 cut(s) | 940, 1116 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 860, 1127 |
| AflII | CTTAAG | 2 cut(s) | 812, 1370 |
| AgsI | TTSAA | 3 cut(s) | 352, 1033, 1139 |
| AjnI | CCWGG | 5 cut(s) | 477, 886, 988, 1075, 1120 |
| AleI | CACNNNNGTG | 1 cut(s) | 47 |
| AluBI | AGCT | 5 cut(s) | 200, 376, 473, 1028, 1172 |
| AluI | AGCT | 5 cut(s) | 200, 376, 473, 1028, 1172 |
| Alw26I | GTCTC | 2 cut(s) | 298, 1264 |
| AlwI | GGATC | 2 cut(s) | 682, 1292 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 770, 803 |
| AoxI | GGCC | 4 cut(s) | 82, 506, 643, 943 |
| ApeKI | GCWGC | 8 cut(s) | 188, 191, 470, 622, 770, 818, 821, 950 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 572, 604 |
| AspS9I | GGNCC | 4 cut(s) | 506, 944, 993, 1102 |
| AsuC2I | CCSGG | 1 cut(s) | 947 |
| AsuHPI | GGTGA | 6 cut(s) | 326, 467, 1149, 1274, 1304, 1328 |
| AvaII | GGWCC | 2 cut(s) | 993, 1102 |
| BaeGI | GKGCMC | 2 cut(s) | 536, 781 |
| BalI | TGGCCA | 1 cut(s) | 84 |
| BanII | GRGCYC | 1 cut(s) | 915 |
| BbsI | GAAGAC | 1 cut(s) | 1326 |
| BbvI | GCAGC | 8 cut(s) | 200, 203, 482, 609, 757, 805, 808, 937 |
| BccI | CCATC | 6 cut(s) | 115, 381, 924, 978, 1229, 1309 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 917, 951 |
| BciT130I | CCWGG | 5 cut(s) | 479, 888, 990, 1077, 1122 |
| BciVI | GTATCC | 1 cut(s) | 1018 |
| BcnI | CCSGG | 1 cut(s) | 947 |
| BcoDI | GTCTC | 2 cut(s) | 298, 1264 |
| BfaI | CTAG | 3 cut(s) | 27, 228, 981 |
| BfmI | CTRYAG | 2 cut(s) | 186, 762 |
| BfrI | CTTAAG | 2 cut(s) | 812, 1370 |
| BfuAI | ACCTGC | 1 cut(s) | 1090 |
| BfuI | GTATCC | 1 cut(s) | 1018 |
| BisI | GCNGC | 9 cut(s) | 189, 192, 407, 471, 623, 771, 819, 822, 951 |
| BlsI | GCNGC | 9 cut(s) | 190, 193, 408, 472, 624, 772, 820, 823, 952 |
| BmcAI | AGTACT | 1 cut(s) | 1116 |
| Bme1390I | CCNGG | 6 cut(s) | 479, 888, 947, 990, 1077, 1122 |
| Bme18I | GGWCC | 2 cut(s) | 993, 1102 |
| BmgT120I | GGNCC | 4 cut(s) | 506, 944, 993, 1102 |
| BmiI | GGNNCC | 4 cut(s) | 57, 243, 994, 1388 |
| BmrFI | CCNGG | 6 cut(s) | 479, 888, 947, 990, 1077, 1122 |
| BmrI | ACTGGG | 1 cut(s) | 1068 |
| BmsI | GCATC | 4 cut(s) | 202, 527, 790, 937 |
| BmuI | ACTGGG | 1 cut(s) | 1068 |
| BpiI | GAAGAC | 1 cut(s) | 1326 |
| BpuEI | CTTGAG | 1 cut(s) | 810 |
| BpuMI | CCSGG | 1 cut(s) | 947 |
| BsaI | GGTCTC | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 5 cut(s) | 245, 988, 989, 1075, 1120 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 150, 180 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 860, 1127 |
| Bse1I | ACTGG | 6 cut(s) | 85, 143, 294, 946, 1063, 1390 |
| Bse3DI | GCAATG | 1 cut(s) | 461 |
| BseBI | CCWGG | 5 cut(s) | 479, 888, 990, 1077, 1122 |
| BseDI | CCNNGG | 5 cut(s) | 245, 988, 989, 1075, 1120 |
| BseGI | GGATG | 4 cut(s) | 518, 916, 970, 1043 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 860, 1127 |
| BseMI | GCAATG | 1 cut(s) | 461 |
| BseMII | CTCAG | 4 cut(s) | 395, 806, 1164, 1214 |
| BseNI | ACTGG | 6 cut(s) | 85, 143, 294, 946, 1063, 1390 |
| BseRI | GAGGAG | 5 cut(s) | 234, 287, 290, 1302, 1395 |
| BseSI | GKGCMC | 2 cut(s) | 536, 781 |
| BseXI | GCAGC | 8 cut(s) | 200, 203, 482, 609, 757, 805, 808, 937 |
| BseYI | CCCAGC | 1 cut(s) | 773 |
| BshFI | GGCC | 4 cut(s) | 84, 508, 645, 945 |
| BsiSI | CCGG | 1 cut(s) | 947 |
| BslFI | GGGAC | 1 cut(s) | 371 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 860, 1127 |
| BsmAI | GTCTC | 2 cut(s) | 298, 1264 |
| BsmBI | CGTCTC | 1 cut(s) | 1264 |
| BsmFI | GGGAC | 1 cut(s) | 371 |
| BsnI | GGCC | 4 cut(s) | 84, 508, 645, 945 |
| Bso31I | GGTCTC | 1 cut(s) | 298 |
| Bsp1286I | GDGCHC | 3 cut(s) | 536, 781, 915 |
| Bsp143I | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| BspACI | CCGC | 1 cut(s) | 406 |
| BspANI | GGCC | 4 cut(s) | 84, 508, 645, 945 |
| BspCNI | CTCAG | 4 cut(s) | 394, 805, 1165, 1213 |
| BspLI | GGNNCC | 4 cut(s) | 57, 243, 994, 1388 |
| BspMAI | CTGCAG | 2 cut(s) | 190, 766 |
| BspMI | ACCTGC | 1 cut(s) | 1090 |
| BspPI | GGATC | 2 cut(s) | 682, 1292 |
| BspTI | CTTAAG | 2 cut(s) | 812, 1370 |
| BspTNI | GGTCTC | 1 cut(s) | 298 |
| BsrDI | GCAATG | 1 cut(s) | 461 |
| BsrI | ACTGG | 6 cut(s) | 85, 143, 294, 946, 1063, 1390 |
| BssECI | CCNNGG | 5 cut(s) | 245, 988, 989, 1075, 1120 |
| BssMI | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| Bst2UI | CCWGG | 5 cut(s) | 479, 888, 990, 1077, 1122 |
| Bst4CI | ACNGT | 8 cut(s) | 49, 139, 444, 529, 538, 584, 925, 1070 |
| Bst6I | CTCTTC | 2 cut(s) | 248, 1260 |
| BstAFI | CTTAAG | 2 cut(s) | 812, 1370 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 444, 770 |
| BstC8I | GCNNGC | 2 cut(s) | 468, 781 |
| BstDEI | CTNAG | 5 cut(s) | 381, 792, 1173, 1200, 1227 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 858 |
| BstF5I | GGATG | 4 cut(s) | 518, 916, 970, 1043 |
| BstKTI | GATC | 5 cut(s) | 224, 677, 1056, 1300, 1369 |
| BstMAI | GTCTC | 2 cut(s) | 298, 1264 |
| BstMBI | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 197, 444, 467, 479, 770, 776, 827 |
| BstNI | CCWGG | 5 cut(s) | 479, 888, 990, 1077, 1122 |
| BstSCI | CCNGG | 6 cut(s) | 477, 886, 945, 988, 1075, 1120 |
| BstSFI | CTRYAG | 2 cut(s) | 186, 762 |
| BstSLI | GKGCMC | 2 cut(s) | 536, 781 |
| BstV1I | GCAGC | 8 cut(s) | 200, 203, 482, 609, 757, 805, 808, 937 |
| BstV2I | GAAGAC | 1 cut(s) | 1326 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 529 |
| BsuI | GTATCC | 1 cut(s) | 1018 |
| BsuRI | GGCC | 4 cut(s) | 84, 508, 645, 945 |
| BtsCI | GGATG | 4 cut(s) | 518, 916, 970, 1043 |
| BtsI | GCAGTG | 2 cut(s) | 956, 1132 |
| BtsIMutI | CAGTG | 6 cut(s) | 534, 534, 956, 1056, 1132, 1334 |
| BveI | ACCTGC | 1 cut(s) | 1090 |
| Cac8I | GCNNGC | 2 cut(s) | 468, 781 |
| CaiI | CAGNNNCTG | 2 cut(s) | 770, 803 |
| Cfr13I | GGNCC | 4 cut(s) | 506, 944, 993, 1102 |
| CsiI | ACCWGGT | 1 cut(s) | 886 |
| Csp6I | GTAC | 2 cut(s) | 939, 1115 |
| CviAII | CATG | 4 cut(s) | 127, 238, 850, 1364 |
| CviQI | GTAC | 2 cut(s) | 939, 1115 |
| DdeI | CTNAG | 5 cut(s) | 381, 792, 1173, 1200, 1227 |
| DpnI | GATC | 5 cut(s) | 223, 676, 1055, 1299, 1368 |
| DpnII | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| DraIII | CACNNNGTG | 2 cut(s) | 444, 890 |
| EaeI | YGGCCR | 1 cut(s) | 82 |
| Eam1104I | CTCTTC | 2 cut(s) | 248, 1260 |
| EarI | CTCTTC | 2 cut(s) | 248, 1260 |
| Eco147I | AGGCCT | 1 cut(s) | 645 |
| Eco24I | GRGCYC | 1 cut(s) | 915 |
| Eco31I | GGTCTC | 1 cut(s) | 298 |
| Eco32I | GATATC | 1 cut(s) | 748 |
| Eco47I | GGWCC | 2 cut(s) | 993, 1102 |
| Eco57I | CTGAAG | 4 cut(s) | 99, 222, 660, 1104 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 858 |
| EcoO109I | RGGNCCY | 1 cut(s) | 993 |
| EcoRII | CCWGG | 5 cut(s) | 477, 886, 988, 1075, 1120 |
| EcoRV | GATATC | 1 cut(s) | 748 |
| EcoT38I | GRGCYC | 1 cut(s) | 915 |
| Esp3I | CGTCTC | 1 cut(s) | 1264 |
| FaeI | CATG | 4 cut(s) | 130, 241, 853, 1367 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 704, 736 |
| FaqI | GGGAC | 1 cut(s) | 371 |
| FatI | CATG | 4 cut(s) | 126, 237, 849, 1363 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 9 cut(s) | 189, 192, 407, 471, 623, 771, 819, 822, 951 |
| FokI | GGATG | 4 cut(s) | 505, 903, 957, 1030 |
| FriOI | GRGCYC | 1 cut(s) | 915 |
| Fsp4HI | GCNGC | 9 cut(s) | 189, 192, 407, 471, 623, 771, 819, 822, 951 |
| FspBI | CTAG | 3 cut(s) | 27, 228, 981 |
| GluI | GCNGC | 9 cut(s) | 189, 192, 407, 471, 623, 771, 819, 822, 951 |
| GsaI | CCCAGC | 1 cut(s) | 777 |
| HaeIII | GGCC | 4 cut(s) | 84, 508, 645, 945 |
| HapII | CCGG | 1 cut(s) | 947 |
| Hin1II | CATG | 4 cut(s) | 130, 241, 853, 1367 |
| HincII | GTYRAC | 1 cut(s) | 1022 |
| HindII | GTYRAC | 1 cut(s) | 1022 |
| HindIII | AAGCTT | 1 cut(s) | 1026 |
| HinfI | GANTC | 7 cut(s) | 23, 328, 688, 739, 1154, 1175, 1204 |
| HpaII | CCGG | 1 cut(s) | 947 |
| HphI | GGTGA | 6 cut(s) | 326, 467, 1149, 1274, 1304, 1328 |
| Hpy166II | GTNNAC | 5 cut(s) | 14, 267, 304, 1022, 1130 |
| Hpy188III | TCNNGA | 3 cut(s) | 743, 1047, 1139 |
| Hpy8I | GTNNAC | 5 cut(s) | 14, 267, 304, 1022, 1130 |
| HpyAV | CCTTC | 6 cut(s) | 197, 311, 425, 635, 972, 1136 |
| HpyCH4III | ACNGT | 8 cut(s) | 49, 139, 444, 529, 538, 584, 925, 1070 |
| HpyCH4IV | ACGT | 2 cut(s) | 98, 555 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 197, 444, 467, 479, 770, 776, 827 |
| HpyF3I | CTNAG | 5 cut(s) | 381, 792, 1173, 1200, 1227 |
| HpySE526I | ACGT | 2 cut(s) | 98, 555 |
| Hsp92II | CATG | 4 cut(s) | 130, 241, 853, 1367 |
| Kzo9I | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| LmnI | GCTCC | 3 cut(s) | 61, 247, 1386 |
| Lsp1109I | GCAGC | 8 cut(s) | 200, 203, 482, 609, 757, 805, 808, 937 |
| LweI | GCATC | 4 cut(s) | 202, 527, 790, 937 |
| MabI | ACCWGGT | 1 cut(s) | 886 |
| MaeI | CTAG | 3 cut(s) | 27, 228, 981 |
| MaeII | ACGT | 2 cut(s) | 98, 555 |
| MaeIII | GTNAC | 6 cut(s) | 556, 595, 703, 787, 1155, 1255 |
| MalI | GATC | 5 cut(s) | 223, 676, 1055, 1299, 1368 |
| MboI | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| MboII | GAAGA | 5 cut(s) | 262, 265, 1045, 1277, 1331 |
| MhlI | GDGCHC | 3 cut(s) | 536, 781, 915 |
| MlsI | TGGCCA | 1 cut(s) | 84 |
| MluCI | AATT | 1 cut(s) | 322 |
| MluNI | TGGCCA | 1 cut(s) | 84 |
| MlyI | GAGTC | 4 cut(s) | 322, 682, 1163, 1184 |
| Mox20I | TGGCCA | 1 cut(s) | 84 |
| MscI | TGGCCA | 1 cut(s) | 84 |
| MseI | TTAA | 9 cut(s) | 399, 450, 648, 813, 903, 998, 1065, 1190, 1371 |
| MslI | CAYNNNNRTG | 3 cut(s) | 36, 47, 527 |
| Msp20I | TGGCCA | 1 cut(s) | 84 |
| MspCI | CTTAAG | 2 cut(s) | 812, 1370 |
| MspI | CCGG | 1 cut(s) | 947 |
| MspR9I | CCNGG | 6 cut(s) | 479, 888, 947, 990, 1077, 1122 |
| MvaI | CCWGG | 5 cut(s) | 479, 888, 990, 1077, 1122 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 197, 444, 467, 479, 770, 776, 827 |
| NciI | CCSGG | 1 cut(s) | 947 |
| NdeII | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| NlaIII | CATG | 4 cut(s) | 130, 241, 853, 1367 |
| NlaIV | GGNNCC | 4 cut(s) | 57, 243, 994, 1388 |
| NmuCI | GTSAC | 3 cut(s) | 556, 787, 1155 |
| OliI | CACNNNNGTG | 1 cut(s) | 47 |
| PasI | CCCWGGG | 1 cut(s) | 989 |
| PceI | AGGCCT | 1 cut(s) | 645 |
| PfeI | GAWTC | 3 cut(s) | 23, 739, 1204 |
| PkrI | GCNGC | 9 cut(s) | 190, 193, 408, 472, 624, 772, 820, 823, 952 |
| PleI | GAGTC | 4 cut(s) | 322, 682, 1162, 1183 |
| PpsI | GAGTC | 4 cut(s) | 322, 682, 1162, 1183 |
| PpuMI | RGGWCCY | 1 cut(s) | 993 |
| Psp5II | RGGWCCY | 1 cut(s) | 993 |
| Psp6I | CCWGG | 5 cut(s) | 477, 886, 988, 1075, 1120 |
| PspFI | CCCAGC | 1 cut(s) | 773 |
| PspGI | CCWGG | 5 cut(s) | 477, 886, 988, 1075, 1120 |
| PspN4I | GGNNCC | 4 cut(s) | 57, 243, 994, 1388 |
| PspPI | GGNCC | 4 cut(s) | 506, 944, 993, 1102 |
| PspPPI | RGGWCCY | 1 cut(s) | 993 |
| PstI | CTGCAG | 2 cut(s) | 190, 766 |
| PstNI | CAGNNNCTG | 2 cut(s) | 770, 803 |
| RsaI | GTAC | 2 cut(s) | 940, 1116 |
| RsaNI | GTAC | 2 cut(s) | 939, 1115 |
| RseI | CAYNNNNRTG | 3 cut(s) | 36, 47, 527 |
| SaqAI | TTAA | 9 cut(s) | 399, 450, 648, 813, 903, 998, 1065, 1190, 1371 |
| SatI | GCNGC | 9 cut(s) | 189, 192, 407, 471, 623, 771, 819, 822, 951 |
| Sau3AI | GATC | 5 cut(s) | 221, 674, 1053, 1297, 1366 |
| Sau96I | GGNCC | 4 cut(s) | 506, 944, 993, 1102 |
| ScaI | AGTACT | 1 cut(s) | 1116 |
| SchI | GAGTC | 4 cut(s) | 322, 682, 1163, 1184 |
| ScrFI | CCNGG | 6 cut(s) | 479, 888, 947, 990, 1077, 1122 |
| SduI | GDGCHC | 3 cut(s) | 536, 781, 915 |
| SexAI | ACCWGGT | 1 cut(s) | 886 |
| SfaNI | GCATC | 4 cut(s) | 202, 527, 790, 937 |
| SfcI | CTRYAG | 2 cut(s) | 186, 762 |
| SinI | GGWCC | 2 cut(s) | 993, 1102 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 36, 47, 527 |
| SmlI | CTYRAG | 3 cut(s) | 812, 825, 1370 |
| SmoI | CTYRAG | 3 cut(s) | 812, 825, 1370 |
| Sse9I | AATT | 1 cut(s) | 322 |
| SseBI | AGGCCT | 1 cut(s) | 645 |
| SsiI | CCGC | 1 cut(s) | 406 |
| SspMI | CTAG | 3 cut(s) | 27, 228, 981 |
| StuI | AGGCCT | 1 cut(s) | 645 |
| StyD4I | CCNGG | 6 cut(s) | 477, 886, 945, 988, 1075, 1120 |
| TaaI | ACNGT | 8 cut(s) | 49, 139, 444, 529, 538, 584, 925, 1070 |
| TaiI | ACGT | 2 cut(s) | 101, 558 |
| TaqI | TCGA | 2 cut(s) | 686, 700 |
| TasI | AATT | 1 cut(s) | 322 |
| TatI | WGTACW | 1 cut(s) | 1114 |
| TauI | GCSGC | 1 cut(s) | 409 |
| TfiI | GAWTC | 3 cut(s) | 23, 739, 1204 |
| Tru1I | TTAA | 9 cut(s) | 399, 450, 648, 813, 903, 998, 1065, 1190, 1371 |
| Tru9I | TTAA | 9 cut(s) | 399, 450, 648, 813, 903, 998, 1065, 1190, 1371 |
| TscAI | CASTG | 6 cut(s) | 534, 541, 963, 1063, 1132, 1341 |
| TseFI | GTSAC | 3 cut(s) | 556, 787, 1155 |
| TseI | GCWGC | 8 cut(s) | 188, 191, 470, 622, 770, 818, 821, 950 |
| Tsp45I | GTSAC | 3 cut(s) | 556, 787, 1155 |
| TspDTI | ATGAA | 5 cut(s) | 117, 143, 752, 1125, 1206 |
| TspGWI | ACGGA | 1 cut(s) | 1357 |
| TspRI | CASTG | 6 cut(s) | 534, 541, 963, 1063, 1132, 1341 |
| Vha464I | CTTAAG | 2 cut(s) | 812, 1370 |
| VpaK11BI | GGWCC | 2 cut(s) | 993, 1102 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 858 |
| XmiI | GTMKAC | 1 cut(s) | 13 |
| XspI | CTAG | 3 cut(s) | 27, 228, 981 |
| ZrmI | AGTACT | 1 cut(s) | 1116 |