Rh7AG446400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
60616564 .. 60623014
6451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG446400.1

Sequence Viewer

Length: 1395 bp
ATGGCTTCTGGTCTACCAAGTGATTCTAGTCATCTGAATGGCACAACGGTGGAGGCTCCATTGACAATAAATATACCTAATGGCCAGTCATCTAAAACGTATGAACCATCTGCTTCAGCAAAAGGCATGAACATTACAGTTCCAGTTTCTATTCAGAAACAGACCCTCCCTGCAACGACAACTACTGCAGCAGCAAAAGCTGAAGGAGATGATGCAAATAGATCAACTAGCAATATCATGGCTCCTCGGAAGAAGAGAAAGAAGTGGACAGAGGAGGAGGATTTGGAACTGGTCTCTGCTGTGAACATATATGGTGAAGGAAATTGGACTCAAATCGTAAAAGCAAACTTCAAAGGGGACAGAACTGCTAATCAGCTATCTCAGAGATGGGGTATTGTTAAGAAGCGGCAAAAAAAGTTGGGTGTGGGAGAAGGAGGCACACCGTGCATTAAAAAAGAGGCATTGCTGGCAGCTCACCAGGCAATAACCCATTTTTTAGATAATGGGCCTAATAGAGCATCCATTACAGTGGGCACTGTGGGAACAAATGCAAACGTCACATCTGCTGAAACAAATGCGAACAGTAGGTCTGGTGTAACAAATGGAATACGCAACTTTGGGCTGCATACTACTACTGCTGAAGGCCTTAATGCAAAAAAACCAAATCGGATAGGATCATTCGGTTCGACTCCAAAAGGTCGAGTTACCTCCAAGAAAACCTTGCCAAAGTCTAATATGAATCCAGATATCATAAGAGCAACTGCAGTTGCTGCTGGGGCACGCATTGTCACTCAGTCAGATGCTGAACTGCTTAAGGCTGCTGCTCAAGCAAAGAACACTATCCATATCATGCCTCAAACAGGGGGTTCTATCAAGTCATTGACACCTGGTGGCTTGTCCATTAAATCAGAGCCCCATCCTACTGTGCATCATATTCGTACTGGCCCGGCTGCAACACTGCCTTCCACCCATCCACCCACTAGACACCCTGGGTCCTTAAAAGTTGTATCCCAGACAAGTCAACAAGCTTTGAAGATTGACACATCCAGAAAGATCACTGGGCTTAACAGTAGCCCTGGTGCTGAAGTCTTACGAAAGCAGGTCCAAAATGAAGTACTCCCTGGCAGTGGACAGGTTCAAGAAGGTAAGGTAGAGTCACCAAAGCAGAAAGCTGAGTCAGAAAGTTTATTAACCAATGCTCAGAATCTTGCTGGTTCATTACACACTAAGAAAGATGGGAGTAATGATAAAGCAGTAACAGGTGAAGAGAGACGGGGTAGTATAGGAGGAGGTGATGATCCATCAGCAGTAAATGGTGAAGACCAAAACACAACACTGAAACGGACAACAGATGTTTCTGACCATGATCTTAAGCAAGGAGGAGGGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

48.68

Weight (kDa)

9.82

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 86 - 130 8.8e-10 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 89 - 130 4.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1090
AccI GTMKAC 1 cut(s) 13
AciI CCGC 1 cut(s) 406
AclWI GGATC 2 cut(s) 682, 1292
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 4 cut(s) 99, 222, 660, 1104
AdeI CACNNNGTG 2 cut(s) 444, 890
AfaI GTAC 2 cut(s) 940, 1116
AfiI CCNNNNNNNGG 2 cut(s) 860, 1127
AflII CTTAAG 2 cut(s) 812, 1370
AgsI TTSAA 3 cut(s) 352, 1033, 1139
AjnI CCWGG 5 cut(s) 477, 886, 988, 1075, 1120
AleI CACNNNNGTG 1 cut(s) 47
AluBI AGCT 5 cut(s) 200, 376, 473, 1028, 1172
AluI AGCT 5 cut(s) 200, 376, 473, 1028, 1172
Alw26I GTCTC 2 cut(s) 298, 1264
AlwI GGATC 2 cut(s) 682, 1292
AlwNI CAGNNNCTG 2 cut(s) 770, 803
AoxI GGCC 4 cut(s) 82, 506, 643, 943
ApeKI GCWGC 8 cut(s) 188, 191, 470, 622, 770, 818, 821, 950
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AspS9I GGNCC 4 cut(s) 506, 944, 993, 1102
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 6 cut(s) 326, 467, 1149, 1274, 1304, 1328
AvaII GGWCC 2 cut(s) 993, 1102
BaeGI GKGCMC 2 cut(s) 536, 781
BalI TGGCCA 1 cut(s) 84
BanII GRGCYC 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 1326
BbvI GCAGC 8 cut(s) 200, 203, 482, 609, 757, 805, 808, 937
BccI CCATC 6 cut(s) 115, 381, 924, 978, 1229, 1309
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 5 cut(s) 479, 888, 990, 1077, 1122
BciVI GTATCC 1 cut(s) 1018
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 2 cut(s) 298, 1264
BfaI CTAG 3 cut(s) 27, 228, 981
BfmI CTRYAG 2 cut(s) 186, 762
BfrI CTTAAG 2 cut(s) 812, 1370
BfuAI ACCTGC 1 cut(s) 1090
BfuI GTATCC 1 cut(s) 1018
BisI GCNGC 9 cut(s) 189, 192, 407, 471, 623, 771, 819, 822, 951
BlsI GCNGC 9 cut(s) 190, 193, 408, 472, 624, 772, 820, 823, 952
BmcAI AGTACT 1 cut(s) 1116
Bme1390I CCNGG 6 cut(s) 479, 888, 947, 990, 1077, 1122
Bme18I GGWCC 2 cut(s) 993, 1102
BmgT120I GGNCC 4 cut(s) 506, 944, 993, 1102
BmiI GGNNCC 4 cut(s) 57, 243, 994, 1388
BmrFI CCNGG 6 cut(s) 479, 888, 947, 990, 1077, 1122
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 4 cut(s) 202, 527, 790, 937
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 1326
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 947
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 5 cut(s) 245, 988, 989, 1075, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 1127
Bse1I ACTGG 6 cut(s) 85, 143, 294, 946, 1063, 1390
Bse3DI GCAATG 1 cut(s) 461
BseBI CCWGG 5 cut(s) 479, 888, 990, 1077, 1122
BseDI CCNNGG 5 cut(s) 245, 988, 989, 1075, 1120
BseGI GGATG 4 cut(s) 518, 916, 970, 1043
BseLI CCNNNNNNNGG 2 cut(s) 860, 1127
BseMI GCAATG 1 cut(s) 461
BseMII CTCAG 4 cut(s) 395, 806, 1164, 1214
BseNI ACTGG 6 cut(s) 85, 143, 294, 946, 1063, 1390
BseRI GAGGAG 5 cut(s) 234, 287, 290, 1302, 1395
BseSI GKGCMC 2 cut(s) 536, 781
BseXI GCAGC 8 cut(s) 200, 203, 482, 609, 757, 805, 808, 937
BseYI CCCAGC 1 cut(s) 773
BshFI GGCC 4 cut(s) 84, 508, 645, 945
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 860, 1127
BsmAI GTCTC 2 cut(s) 298, 1264
BsmBI CGTCTC 1 cut(s) 1264
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 4 cut(s) 84, 508, 645, 945
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 536, 781, 915
Bsp143I GATC 5 cut(s) 221, 674, 1053, 1297, 1366
BspACI CCGC 1 cut(s) 406
BspANI GGCC 4 cut(s) 84, 508, 645, 945
BspCNI CTCAG 4 cut(s) 394, 805, 1165, 1213
BspLI GGNNCC 4 cut(s) 57, 243, 994, 1388
BspMAI CTGCAG 2 cut(s) 190, 766
BspMI ACCTGC 1 cut(s) 1090
BspPI GGATC 2 cut(s) 682, 1292
BspTI CTTAAG 2 cut(s) 812, 1370
BspTNI GGTCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 461
BsrI ACTGG 6 cut(s) 85, 143, 294, 946, 1063, 1390
BssECI CCNNGG 5 cut(s) 245, 988, 989, 1075, 1120
BssMI GATC 5 cut(s) 221, 674, 1053, 1297, 1366
Bst2UI CCWGG 5 cut(s) 479, 888, 990, 1077, 1122
Bst4CI ACNGT 8 cut(s) 49, 139, 444, 529, 538, 584, 925, 1070
Bst6I CTCTTC 2 cut(s) 248, 1260
BstAFI CTTAAG 2 cut(s) 812, 1370
BstAPI GCANNNNNTGC 2 cut(s) 444, 770
BstC8I GCNNGC 2 cut(s) 468, 781
BstDEI CTNAG 5 cut(s) 381, 792, 1173, 1200, 1227
BstENI CCTNNNNNAGG 1 cut(s) 858
BstF5I GGATG 4 cut(s) 518, 916, 970, 1043
BstKTI GATC 5 cut(s) 224, 677, 1056, 1300, 1369
BstMAI GTCTC 2 cut(s) 298, 1264
BstMBI GATC 5 cut(s) 221, 674, 1053, 1297, 1366
BstMWI GCNNNNNNNGC 7 cut(s) 197, 444, 467, 479, 770, 776, 827
BstNI CCWGG 5 cut(s) 479, 888, 990, 1077, 1122
BstSCI CCNGG 6 cut(s) 477, 886, 945, 988, 1075, 1120
BstSFI CTRYAG 2 cut(s) 186, 762
BstSLI GKGCMC 2 cut(s) 536, 781
BstV1I GCAGC 8 cut(s) 200, 203, 482, 609, 757, 805, 808, 937
BstV2I GAAGAC 1 cut(s) 1326
BstXI CCANNNNNNTGG 1 cut(s) 529
BsuI GTATCC 1 cut(s) 1018
BsuRI GGCC 4 cut(s) 84, 508, 645, 945
BtsCI GGATG 4 cut(s) 518, 916, 970, 1043
BtsI GCAGTG 2 cut(s) 956, 1132
BtsIMutI CAGTG 6 cut(s) 534, 534, 956, 1056, 1132, 1334
BveI ACCTGC 1 cut(s) 1090
Cac8I GCNNGC 2 cut(s) 468, 781
CaiI CAGNNNCTG 2 cut(s) 770, 803
Cfr13I GGNCC 4 cut(s) 506, 944, 993, 1102
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 2 cut(s) 939, 1115
CviAII CATG 4 cut(s) 127, 238, 850, 1364
CviQI GTAC 2 cut(s) 939, 1115
DdeI CTNAG 5 cut(s) 381, 792, 1173, 1200, 1227
DpnI GATC 5 cut(s) 223, 676, 1055, 1299, 1368
DpnII GATC 5 cut(s) 221, 674, 1053, 1297, 1366
DraIII CACNNNGTG 2 cut(s) 444, 890
EaeI YGGCCR 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 248, 1260
EarI CTCTTC 2 cut(s) 248, 1260
Eco147I AGGCCT 1 cut(s) 645
Eco24I GRGCYC 1 cut(s) 915
Eco31I GGTCTC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 993, 1102
Eco57I CTGAAG 4 cut(s) 99, 222, 660, 1104
EcoNI CCTNNNNNAGG 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 993
EcoRII CCWGG 5 cut(s) 477, 886, 988, 1075, 1120
EcoRV GATATC 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 1264
FaeI CATG 4 cut(s) 130, 241, 853, 1367
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 126, 237, 849, 1363
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 9 cut(s) 189, 192, 407, 471, 623, 771, 819, 822, 951
FokI GGATG 4 cut(s) 505, 903, 957, 1030
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 9 cut(s) 189, 192, 407, 471, 623, 771, 819, 822, 951
FspBI CTAG 3 cut(s) 27, 228, 981
GluI GCNGC 9 cut(s) 189, 192, 407, 471, 623, 771, 819, 822, 951
GsaI CCCAGC 1 cut(s) 777
HaeIII GGCC 4 cut(s) 84, 508, 645, 945
HapII CCGG 1 cut(s) 947
Hin1II CATG 4 cut(s) 130, 241, 853, 1367
HincII GTYRAC 1 cut(s) 1022
HindII GTYRAC 1 cut(s) 1022
HindIII AAGCTT 1 cut(s) 1026
HinfI GANTC 7 cut(s) 23, 328, 688, 739, 1154, 1175, 1204
HpaII CCGG 1 cut(s) 947
HphI GGTGA 6 cut(s) 326, 467, 1149, 1274, 1304, 1328
Hpy166II GTNNAC 5 cut(s) 14, 267, 304, 1022, 1130
Hpy188III TCNNGA 3 cut(s) 743, 1047, 1139
Hpy8I GTNNAC 5 cut(s) 14, 267, 304, 1022, 1130
HpyAV CCTTC 6 cut(s) 197, 311, 425, 635, 972, 1136
HpyCH4III ACNGT 8 cut(s) 49, 139, 444, 529, 538, 584, 925, 1070
HpyCH4IV ACGT 2 cut(s) 98, 555
HpyF10VI GCNNNNNNNGC 7 cut(s) 197, 444, 467, 479, 770, 776, 827
HpyF3I CTNAG 5 cut(s) 381, 792, 1173, 1200, 1227
HpySE526I ACGT 2 cut(s) 98, 555
Hsp92II CATG 4 cut(s) 130, 241, 853, 1367
Kzo9I GATC 5 cut(s) 221, 674, 1053, 1297, 1366
LmnI GCTCC 3 cut(s) 61, 247, 1386
Lsp1109I GCAGC 8 cut(s) 200, 203, 482, 609, 757, 805, 808, 937
LweI GCATC 4 cut(s) 202, 527, 790, 937
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 3 cut(s) 27, 228, 981
MaeII ACGT 2 cut(s) 98, 555
MaeIII GTNAC 6 cut(s) 556, 595, 703, 787, 1155, 1255
MalI GATC 5 cut(s) 223, 676, 1055, 1299, 1368
MboI GATC 5 cut(s) 221, 674, 1053, 1297, 1366
MboII GAAGA 5 cut(s) 262, 265, 1045, 1277, 1331
MhlI GDGCHC 3 cut(s) 536, 781, 915
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 322
MluNI TGGCCA 1 cut(s) 84
MlyI GAGTC 4 cut(s) 322, 682, 1163, 1184
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 9 cut(s) 399, 450, 648, 813, 903, 998, 1065, 1190, 1371
MslI CAYNNNNRTG 3 cut(s) 36, 47, 527
Msp20I TGGCCA 1 cut(s) 84
MspCI CTTAAG 2 cut(s) 812, 1370
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 6 cut(s) 479, 888, 947, 990, 1077, 1122
MvaI CCWGG 5 cut(s) 479, 888, 990, 1077, 1122
MwoI GCNNNNNNNGC 7 cut(s) 197, 444, 467, 479, 770, 776, 827
NciI CCSGG 1 cut(s) 947
NdeII GATC 5 cut(s) 221, 674, 1053, 1297, 1366
NlaIII CATG 4 cut(s) 130, 241, 853, 1367
NlaIV GGNNCC 4 cut(s) 57, 243, 994, 1388
NmuCI GTSAC 3 cut(s) 556, 787, 1155
OliI CACNNNNGTG 1 cut(s) 47
PasI CCCWGGG 1 cut(s) 989
PceI AGGCCT 1 cut(s) 645
PfeI GAWTC 3 cut(s) 23, 739, 1204
PkrI GCNGC 9 cut(s) 190, 193, 408, 472, 624, 772, 820, 823, 952
PleI GAGTC 4 cut(s) 322, 682, 1162, 1183
PpsI GAGTC 4 cut(s) 322, 682, 1162, 1183
PpuMI RGGWCCY 1 cut(s) 993
Psp5II RGGWCCY 1 cut(s) 993
Psp6I CCWGG 5 cut(s) 477, 886, 988, 1075, 1120
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 5 cut(s) 477, 886, 988, 1075, 1120
PspN4I GGNNCC 4 cut(s) 57, 243, 994, 1388
PspPI GGNCC 4 cut(s) 506, 944, 993, 1102
PspPPI RGGWCCY 1 cut(s) 993
PstI CTGCAG 2 cut(s) 190, 766
PstNI CAGNNNCTG 2 cut(s) 770, 803
RsaI GTAC 2 cut(s) 940, 1116
RsaNI GTAC 2 cut(s) 939, 1115
RseI CAYNNNNRTG 3 cut(s) 36, 47, 527
SaqAI TTAA 9 cut(s) 399, 450, 648, 813, 903, 998, 1065, 1190, 1371
SatI GCNGC 9 cut(s) 189, 192, 407, 471, 623, 771, 819, 822, 951
Sau3AI GATC 5 cut(s) 221, 674, 1053, 1297, 1366
Sau96I GGNCC 4 cut(s) 506, 944, 993, 1102
ScaI AGTACT 1 cut(s) 1116
SchI GAGTC 4 cut(s) 322, 682, 1163, 1184
ScrFI CCNGG 6 cut(s) 479, 888, 947, 990, 1077, 1122
SduI GDGCHC 3 cut(s) 536, 781, 915
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 4 cut(s) 202, 527, 790, 937
SfcI CTRYAG 2 cut(s) 186, 762
SinI GGWCC 2 cut(s) 993, 1102
SmiMI CAYNNNNRTG 3 cut(s) 36, 47, 527
SmlI CTYRAG 3 cut(s) 812, 825, 1370
SmoI CTYRAG 3 cut(s) 812, 825, 1370
Sse9I AATT 1 cut(s) 322
SseBI AGGCCT 1 cut(s) 645
SsiI CCGC 1 cut(s) 406
SspMI CTAG 3 cut(s) 27, 228, 981
StuI AGGCCT 1 cut(s) 645
StyD4I CCNGG 6 cut(s) 477, 886, 945, 988, 1075, 1120
TaaI ACNGT 8 cut(s) 49, 139, 444, 529, 538, 584, 925, 1070
TaiI ACGT 2 cut(s) 101, 558
TaqI TCGA 2 cut(s) 686, 700
TasI AATT 1 cut(s) 322
TatI WGTACW 1 cut(s) 1114
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 3 cut(s) 23, 739, 1204
Tru1I TTAA 9 cut(s) 399, 450, 648, 813, 903, 998, 1065, 1190, 1371
Tru9I TTAA 9 cut(s) 399, 450, 648, 813, 903, 998, 1065, 1190, 1371
TscAI CASTG 6 cut(s) 534, 541, 963, 1063, 1132, 1341
TseFI GTSAC 3 cut(s) 556, 787, 1155
TseI GCWGC 8 cut(s) 188, 191, 470, 622, 770, 818, 821, 950
Tsp45I GTSAC 3 cut(s) 556, 787, 1155
TspDTI ATGAA 5 cut(s) 117, 143, 752, 1125, 1206
TspGWI ACGGA 1 cut(s) 1357
TspRI CASTG 6 cut(s) 534, 541, 963, 1063, 1132, 1341
Vha464I CTTAAG 2 cut(s) 812, 1370
VpaK11BI GGWCC 2 cut(s) 993, 1102
XagI CCTNNNNNAGG 1 cut(s) 858
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 3 cut(s) 27, 228, 981
ZrmI AGTACT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.