FvH4_5g34820
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
25480424 .. 25487565
7142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34820.t2

Sequence Viewer

Length: 1713 bp
ATGATGATAGATGATAACAACAACGCTAAGGATGGGAAGAAGGGCTTCATCACCGAAGAAGACACCGCCACTCTCTTACAGAGGTACTCGGCGGCGACGATACTGGCATTGCTGCAGGAAGTGGCACACTTGATGCAGTCGGAGAAGATCAACTATGATGAGTTGGTGGCCAAGACTACGACTGGGATCACAAATGCTAGAGAGTATCAGATGCTTTGGCGACATCTGGCTTATAGGGAGCCTTTGCCTGACAAATTTGACGACGGAGAAGCTCTTATGAGAAACTTGGAATATAATGATGTTCATGGAGATCTATCAATCTTGCTGAAGTTTCTGGTCCCAGAGTTTAGTGCATGCCATATAAATGATGTAGACAGTGACTACGAATATGATGTGGAAGTTGCTCCTCCTGTTACTGCTGATGCTTCAACAGAGGCTGCAGCATGTGTGAAGGTCCTTATGGCTTCTGGTTTACCAAGTGATTCCAGTCATCTGAACGGTACAACGGTGGAGGCTCCATTGACAATAAATATACCTAATGGCCAGTCATCTAAAGCACATGAACCATCTATTTCAGCAAGAGGCGTGAACATTACAGTTCCGGTTTCTATTCAGAAACAGACCTTTCCTGCAACAACAACTACTGCAGTAGCGAAAGTTGAAGGAGATGATGCAAATAAAGCAGCTAGCAATACCATGGCTCCTCGGAGGAAAAGAAAAAAGTGGTCAGAGGAGGAGGATTTGGAACTGATATCTGCTGTGAACATATATGGTGAAGGAAATTGGACCCAAATTGTAAAAGCAAACTTCAAAGGGGATAGAACTGCTAATCAGTTATCTCAGAGATGGGGTATTGTTAAGAAGCGACAGAGAAAGTCGGGTCCGGGAGAAGGAGATAAAGGCACACAGTCCGTTAAAAAGGAGGCATTGCTGGCAGCTCACCAGGCAATAACCCATTTTTTGGATAGTGGGTCGAACAGAACACTTATTACAGTGGGCACTGGTGGAACAAATGTAAACATCAATACTGCTGAAACAAATGCAAACAATGAGTCTGGTGTAACAAATGGAATACACAACTCTGGGCTGCAGACTACTACTGCTGAAGGCCTTAATGCAAAAAAGACGAATCGGATGGGATCATTCGGTCCGACTCCTAAAGGTCGAATTACCTCCAAGAAAACCTTGCCAAAGTCTAATATGAATTTAGATCCCTTAAGTGCAACTGCGGTTGCTGCTGGGGCACGCATTGTCTCTCAGTCAGATGCTGAACTGCTCAAGGCTGCTGCTCAAGCAAAGAACGCTATACATATCATGCCTCAAACAGGGGGTTCTATCAAATCATCTACCGTGCATCACATTCGTACTAACCCCGCTGCGACACTACCTTCCACCCATCCAACCACTAGACACCCTGGGTCTGTAAAAGCTGTACCCCAGACAAGTCAGCAAGCTTTAAATATTGACACATCCAGAAACATCACTGGGGTTAACAGTAGCCCAGCTGCTGAAGTCTTACCAAAGCCGGTCCAAATTGGGGAACATCTCTCTGGGAGTGAACAGATTCAAGAAGGTAAAGTGGAGTCACCAAAGCAGACAGCTGTGTCAGAAAGTTTATTAACCGATGCTCAGAATCCTGCTGCTTCATTGGACACTAAGAAAGATGAGAGTAATGATAAAGCCATTACAGGTGATGAGAGAAAGGTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

571

Amino Acids

61.03

Weight (kDa)

6.45

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 210 - 254 2e-09 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 213 - 263 1.9e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1603
AccB7I CCANNNNNTGG 1 cut(s) 961
AccI GTMKAC 1 cut(s) 372
AciI CCGC 4 cut(s) 66, 92, 1229, 1374
AclWI GGATC 3 cut(s) 194, 1147, 1205
AcoI YGGCCR 2 cut(s) 168, 541
AcsI RAATTY 2 cut(s) 254, 1204
AcuI CTGAAG 3 cut(s) 347, 1125, 1530
AfaI GTAC 4 cut(s) 86, 502, 1366, 1434
AfiI CCNNNNNNNGG 4 cut(s) 890, 961, 1325, 1537
AflII CTTAAG 1 cut(s) 1216
AgsI TTSAA 4 cut(s) 429, 662, 811, 1568
AjnI CCWGG 2 cut(s) 942, 1414
AluBI AGCT 7 cut(s) 272, 686, 938, 1430, 1454, 1505, 1601
AluI AGCT 7 cut(s) 272, 686, 938, 1430, 1454, 1505, 1601
Alw26I GTCTC 1 cut(s) 1258
AlwI GGATC 3 cut(s) 194, 1147, 1205
AlwNI CAGNNNCTG 3 cut(s) 437, 1268, 1508
AoxI GGCC 3 cut(s) 168, 541, 1108
ApoI RAATTY 2 cut(s) 254, 1204
ArsI GACNNNNNNTTYG 2 cut(s) 1037, 1069
Asp700I GAANNNNTTC 2 cut(s) 44, 1563
AspS9I GGNCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
AsuC2I CCSGG 1 cut(s) 885
AsuHPI GGTGA 5 cut(s) 43, 785, 932, 1578, 1703
AsuNHI GCTAGC 1 cut(s) 686
AvaII GGWCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
BaeGI GKGCMC 2 cut(s) 1001, 1246
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BalI TGGCCA 2 cut(s) 170, 543
BbsI GAAGAC 1 cut(s) 66
BccI CCATC 5 cut(s) 26, 574, 840, 1129, 1404
BcgI CGANNNNNNTGC 2 cut(s) 1343, 1377
BciT130I CCWGG 2 cut(s) 944, 1416
BcnI CCSGG 1 cut(s) 885
BcoDI GTCTC 1 cut(s) 1258
BfaI CTAG 3 cut(s) 198, 687, 1407
BfmI CTRYAG 4 cut(s) 113, 438, 645, 1088
BfrI CTTAAG 1 cut(s) 1216
BglII AGATCT 1 cut(s) 310
Bme1390I CCNGG 3 cut(s) 885, 944, 1416
Bme18I GGWCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
BmgT120I GGNCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
BmiI GGNNCC 6 cut(s) 240, 339, 516, 702, 788, 882
BmrFI CCNGG 3 cut(s) 885, 944, 1416
BmrI ACTGGG 2 cut(s) 192, 1494
BmsI GCATC 7 cut(s) 123, 201, 412, 661, 1255, 1363, 1615
BmtI GCTAGC 1 cut(s) 690
BmuI ACTGGG 2 cut(s) 192, 1494
BpiI GAAGAC 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 2 cut(s) 1262, 1275
BpuMI CCSGG 1 cut(s) 885
BsaJI CCNNGG 4 cut(s) 696, 704, 1414, 1415
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 4 cut(s) 890, 961, 1325, 1537
Bse118I RCCGGY 1 cut(s) 1525
Bse1I ACTGG 6 cut(s) 108, 187, 486, 544, 1006, 1489
Bse3DI GCAATG 2 cut(s) 107, 926
BseBI CCWGG 2 cut(s) 944, 1416
BseDI CCNNGG 4 cut(s) 696, 704, 1414, 1415
BseGI GGATG 4 cut(s) 37, 1140, 1396, 1469
BseLI CCNNNNNNNGG 4 cut(s) 890, 961, 1325, 1537
BseMI GCAATG 2 cut(s) 107, 926
BseMII CTCAG 3 cut(s) 854, 1271, 1643
BseNI ACTGG 6 cut(s) 108, 187, 486, 544, 1006, 1489
BseRI GAGGAG 4 cut(s) 396, 693, 746, 749
BseSI GKGCMC 2 cut(s) 1001, 1246
BseYI CCCAGC 2 cut(s) 1238, 1501
BshFI GGCC 3 cut(s) 170, 543, 1110
BsiSI CCGG 3 cut(s) 602, 884, 1526
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 4 cut(s) 890, 961, 1325, 1537
BsmAI GTCTC 1 cut(s) 1258
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 3 cut(s) 170, 543, 1110
Bsp1286I GDGCHC 2 cut(s) 1001, 1246
Bsp143I GATC 5 cut(s) 147, 186, 310, 1139, 1210
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 4 cut(s) 66, 92, 1229, 1374
BspANI GGCC 3 cut(s) 170, 543, 1110
BspCNI CTCAG 3 cut(s) 853, 1270, 1642
BspLI GGNNCC 6 cut(s) 240, 339, 516, 702, 788, 882
BspMAI CTGCAG 4 cut(s) 117, 442, 649, 1092
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 3 cut(s) 194, 1147, 1205
BspTI CTTAAG 1 cut(s) 1216
BsrDI GCAATG 2 cut(s) 107, 926
BsrFI RCCGGY 1 cut(s) 1525
BsrI ACTGG 6 cut(s) 108, 187, 486, 544, 1006, 1489
BssAI RCCGGY 1 cut(s) 1525
BssECI CCNNGG 4 cut(s) 696, 704, 1414, 1415
BssMI GATC 5 cut(s) 147, 186, 310, 1139, 1210
BssT1I CCWWGG 1 cut(s) 696
Bst2UI CCWGG 2 cut(s) 944, 1416
Bst4CI ACNGT 8 cut(s) 377, 500, 508, 598, 909, 994, 1351, 1496
BstAFI CTTAAG 1 cut(s) 1216
BstC8I GCNNGC 5 cut(s) 355, 688, 933, 1246, 1452
BstDEI CTNAG 5 cut(s) 27, 840, 1257, 1629, 1656
BstDSI CCRYGG 1 cut(s) 696
BstENI CCTNNNNNAGG 1 cut(s) 1323
BstF5I GGATG 4 cut(s) 37, 1140, 1396, 1469
BstKTI GATC 5 cut(s) 150, 189, 313, 1142, 1213
BstMAI GTCTC 1 cut(s) 1258
BstMBI GATC 5 cut(s) 147, 186, 310, 1139, 1210
BstMWI GCNNNNNNNGC 7 cut(s) 680, 932, 944, 1235, 1241, 1292, 1301
BstNI CCWGG 2 cut(s) 944, 1416
BstNSI RCATGY 2 cut(s) 357, 447
BstSCI CCNGG 3 cut(s) 883, 942, 1414
BstSFI CTRYAG 4 cut(s) 113, 438, 645, 1088
BstSLI GKGCMC 2 cut(s) 1001, 1246
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 310, 1210
BstYI RGATCY 2 cut(s) 310, 1210
BsuRI GGCC 3 cut(s) 170, 543, 1110
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 4 cut(s) 37, 1140, 1396, 1469
BtsIMutI CAGTG 4 cut(s) 382, 999, 999, 1482
Cac8I GCNNGC 5 cut(s) 355, 688, 933, 1246, 1452
CaiI CAGNNNCTG 3 cut(s) 437, 1268, 1508
Cfr10I RCCGGY 1 cut(s) 1525
Cfr13I GGNCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
CpoI CGGWCCG 1 cut(s) 1148
Csp6I GTAC 4 cut(s) 85, 501, 1365, 1433
CspI CGGWCCG 1 cut(s) 1148
CviAII CATG 6 cut(s) 305, 354, 444, 560, 697, 1315
CviQI GTAC 4 cut(s) 85, 501, 1365, 1433
DdeI CTNAG 5 cut(s) 27, 840, 1257, 1629, 1656
DpnI GATC 5 cut(s) 149, 188, 312, 1141, 1212
DpnII GATC 5 cut(s) 147, 186, 310, 1139, 1210
DraI TTTAAA 1 cut(s) 1458
DrdI GACNNNNNNGTC 1 cut(s) 1603
DseDI GACNNNNNNGTC 1 cut(s) 1603
EaeI YGGCCR 2 cut(s) 168, 541
Eco130I CCWWGG 1 cut(s) 696
Eco147I AGGCCT 1 cut(s) 1110
Eco32I GATATC 1 cut(s) 753
Eco47I GGWCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
Eco57I CTGAAG 3 cut(s) 347, 1125, 1530
EcoNI CCTNNNNNAGG 1 cut(s) 1323
EcoO109I RGGNCCY 1 cut(s) 454
EcoRII CCWGG 2 cut(s) 942, 1414
EcoRV GATATC 1 cut(s) 753
EcoT14I CCWWGG 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 6 cut(s) 308, 357, 447, 563, 700, 1318
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 1169, 1201
FaqI GGGAC 1 cut(s) 323
FatI CATG 6 cut(s) 304, 353, 443, 559, 696, 1314
FauI CCCGC 1 cut(s) 1381
FblI GTMKAC 1 cut(s) 372
FokI GGATG 4 cut(s) 44, 1147, 1383, 1456
FspBI CTAG 3 cut(s) 198, 687, 1407
GsaI CCCAGC 2 cut(s) 1242, 1505
HaeIII GGCC 3 cut(s) 170, 543, 1110
HapII CCGG 3 cut(s) 602, 884, 1526
Hin1II CATG 6 cut(s) 308, 357, 447, 563, 700, 1318
HincII GTYRAC 1 cut(s) 1492
HindII GTYRAC 1 cut(s) 1492
HindIII AAGCTT 1 cut(s) 1452
HinfI GANTC 7 cut(s) 482, 1052, 1129, 1153, 1564, 1583, 1633
HpaI GTTAAC 1 cut(s) 1492
HpaII CCGG 3 cut(s) 602, 884, 1526
HphI GGTGA 5 cut(s) 43, 785, 932, 1578, 1703
Hpy166II GTNNAC 7 cut(s) 373, 473, 589, 763, 1018, 1492, 1559
Hpy188III TCNNGA 2 cut(s) 1473, 1568
Hpy8I GTNNAC 7 cut(s) 373, 473, 589, 763, 1018, 1492, 1559
Hpy99I CGWCG 2 cut(s) 100, 266
HpyAV CCTTC 8 cut(s) 34, 445, 656, 770, 884, 1100, 1398, 1565
HpyCH4III ACNGT 8 cut(s) 377, 500, 508, 598, 909, 994, 1351, 1496
HpyF10VI GCNNNNNNNGC 7 cut(s) 680, 932, 944, 1235, 1241, 1292, 1301
HpyF3I CTNAG 5 cut(s) 27, 840, 1257, 1629, 1656
Hsp92II CATG 6 cut(s) 308, 357, 447, 563, 700, 1318
KspAI GTTAAC 1 cut(s) 1492
Kzo9I GATC 5 cut(s) 147, 186, 310, 1139, 1210
LmnI GCTCC 4 cut(s) 238, 409, 520, 706
LweI GCATC 7 cut(s) 123, 201, 412, 661, 1255, 1363, 1615
MaeI CTAG 3 cut(s) 198, 687, 1407
MaeIII GTNAC 4 cut(s) 377, 412, 1060, 1584
MalI GATC 5 cut(s) 149, 188, 312, 1141, 1212
MboI GATC 5 cut(s) 147, 186, 310, 1139, 1210
MboII GAAGA 4 cut(s) 49, 68, 71, 157
MflI RGATCY 2 cut(s) 310, 1210
MhlI GDGCHC 2 cut(s) 1001, 1246
MlsI TGGCCA 2 cut(s) 170, 543
MluCI AATT 6 cut(s) 254, 781, 792, 1167, 1204, 1533
MluNI TGGCCA 2 cut(s) 170, 543
MlyI GAGTC 3 cut(s) 1061, 1147, 1592
MmeI TCCRAC 3 cut(s) 120, 1175, 1424
Mox20I TGGCCA 2 cut(s) 170, 543
MroXI GAANNNNTTC 2 cut(s) 44, 1563
MscI TGGCCA 2 cut(s) 170, 543
MseI TTAA 7 cut(s) 858, 915, 1113, 1217, 1457, 1491, 1619
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 2 cut(s) 170, 543
MspA1I CMGCKG 3 cut(s) 1376, 1505, 1601
MspCI CTTAAG 1 cut(s) 1216
MspI CCGG 3 cut(s) 602, 884, 1526
MspR9I CCNGG 3 cut(s) 885, 944, 1416
MvaI CCWGG 2 cut(s) 944, 1416
MwoI GCNNNNNNNGC 7 cut(s) 680, 932, 944, 1235, 1241, 1292, 1301
NciI CCSGG 1 cut(s) 885
NcoI CCATGG 1 cut(s) 696
NdeII GATC 5 cut(s) 147, 186, 310, 1139, 1210
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 6 cut(s) 308, 357, 447, 563, 700, 1318
NlaIV GGNNCC 6 cut(s) 240, 339, 516, 702, 788, 882
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 377, 1584
NspI RCATGY 2 cut(s) 357, 447
PaeI GCATGC 1 cut(s) 357
PasI CCCWGGG 1 cut(s) 1415
PceI AGGCCT 1 cut(s) 1110
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 44, 1563
PfeI GAWTC 4 cut(s) 482, 1129, 1564, 1633
PflMI CCANNNNNTGG 1 cut(s) 961
PfoI TCCNGGA 1 cut(s) 883
PleI GAGTC 3 cut(s) 1060, 1147, 1591
PpsI GAGTC 3 cut(s) 1060, 1147, 1591
PpuMI RGGWCCY 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 942, 1414
PspFI CCCAGC 2 cut(s) 1238, 1501
PspGI CCWGG 2 cut(s) 942, 1414
PspN4I GGNNCC 6 cut(s) 240, 339, 516, 702, 788, 882
PspPI GGNCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
PspPPI RGGWCCY 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 973, 1005
PstI CTGCAG 4 cut(s) 117, 442, 649, 1092
PstNI CAGNNNCTG 3 cut(s) 437, 1268, 1508
PsuI RGATCY 2 cut(s) 310, 1210
PvuII CAGCTG 2 cut(s) 1505, 1601
RsaI GTAC 4 cut(s) 86, 502, 1366, 1434
RsaNI GTAC 4 cut(s) 85, 501, 1365, 1433
RseI CAYNNNNRTG 1 cut(s) 363
Rsr2I CGGWCCG 1 cut(s) 1148
RsrII CGGWCCG 1 cut(s) 1148
SaqAI TTAA 7 cut(s) 858, 915, 1113, 1217, 1457, 1491, 1619
Sau3AI GATC 5 cut(s) 147, 186, 310, 1139, 1210
Sau96I GGNCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
SchI GAGTC 3 cut(s) 1061, 1147, 1592
ScrFI CCNGG 3 cut(s) 885, 944, 1416
SduI GDGCHC 2 cut(s) 1001, 1246
SfaNI GCATC 7 cut(s) 123, 201, 412, 661, 1255, 1363, 1615
SfcI CTRYAG 4 cut(s) 113, 438, 645, 1088
SinI GGWCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 3 cut(s) 1216, 1277, 1290
SmoI CTYRAG 3 cut(s) 1216, 1277, 1290
SphI GCATGC 1 cut(s) 357
Sse9I AATT 6 cut(s) 254, 781, 792, 1167, 1204, 1533
SseBI AGGCCT 1 cut(s) 1110
SsiI CCGC 4 cut(s) 66, 92, 1229, 1374
SspI AATATT 1 cut(s) 1462
SspMI CTAG 3 cut(s) 198, 687, 1407
StuI AGGCCT 1 cut(s) 1110
StyD4I CCNGG 3 cut(s) 883, 942, 1414
StyI CCWWGG 1 cut(s) 696
TaaI ACNGT 8 cut(s) 377, 500, 508, 598, 909, 994, 1351, 1496
TaqI TCGA 2 cut(s) 974, 1165
TaqII GACCGA 1 cut(s) 1136
TasI AATT 6 cut(s) 254, 781, 792, 1167, 1204, 1533
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 4 cut(s) 482, 1129, 1564, 1633
Tru1I TTAA 7 cut(s) 858, 915, 1113, 1217, 1457, 1491, 1619
Tru9I TTAA 7 cut(s) 858, 915, 1113, 1217, 1457, 1491, 1619
TscAI CASTG 4 cut(s) 382, 999, 1006, 1489
TseFI GTSAC 2 cut(s) 377, 1584
Tsp45I GTSAC 2 cut(s) 377, 1584
TspDTI ATGAA 5 cut(s) 37, 293, 576, 1217, 1635
TspGWI ACGGA 2 cut(s) 279, 901
TspRI CASTG 4 cut(s) 382, 999, 1006, 1489
Van91I CCANNNNNTGG 1 cut(s) 961
Vha464I CTTAAG 1 cut(s) 1216
VpaK11BI GGWCC 6 cut(s) 337, 454, 786, 881, 1148, 1528
XagI CCTNNNNNAGG 1 cut(s) 1323
XapI RAATTY 2 cut(s) 254, 1204
XceI RCATGY 2 cut(s) 357, 447
XmiI GTMKAC 1 cut(s) 372
XmnI GAANNNNTTC 2 cut(s) 44, 1563
XspI CTAG 3 cut(s) 198, 687, 1407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.