Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002617.1

Orthogroup ID

OG0005981

Physical Location & Seq

Genomic Coordinates Forward (+)

82500 .. 84514

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002617.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atgatcaaatttattttcttttgtcccagatatgaaaccggagaccacgtgggtgtttatgcagataattgtgatgacacagttgaagaagctgcaaagttgttgggtcaacctttagatttgctgttctccattcataccgacaataatgatggcacatcacttggaagctcattgccgcctccttttcctggtccttgcacactcaaaacagcattggcacgttatgctgatctattgaacccacctaggaaggctgctctaattgctttggctgcacatgcagttgaacctagtgaggcagaaagactcaagttcttatcatcacctcaggggaaggatgagtactcaaaatgggttgttggaagtcagagaagtcttctagaggtgatggctgaattcccatcagcaaagcctccactaggcgtgttttttgctgcagttgcccctcgcttgcagcctcgttactattcaatttcgtcatcaccaaggtttgccccacatcgtgttcatgtgacctgtgctttggtttatggtccaactccgactggcagaattcacaaaggagtgtcttcattctggatgaagaatgcagttcctctagagaaaagccagaactgtagctgggctcctatttttattaggcaatctaatttcaagttacctgctgaccattcagttccaattgtcatggtggggcctggtacaggcttagcacctttccgaggatttctacaggaaagattagccctcaaagaggaaggtgctcaacttggtcctgcatttctcttctttggttgtagaaatcgacaaatggatttcatttatgaagatgagttgaataattttgtgcaacaaggtgcactatcagagttaatcgttgcattctcacgggagggaccatcaaaggagtatgttcaacataagatgatggagaaagcagcgtacatgtggaacctaatatcgcaagggggatacttctacgtatgtggtgatgccaagggtatggcgagagatgttcatcggacgttgcataccattgtccagcaagaggaaaaagtagactcgtcaaaggcagagtctatagtgaaaaaactccagatggatggacgatacctcagggatgtctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

377

Amino Acids

42.02

Weight (kDa)

8.08

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005981)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24520 AT4G24520
fragaria_vesca	FvH4_5g34830 FvH4_5g34830 FvH4_5g34830 FvH4_5g34830 FvH4_5g34830
malus_domestica	MD08G1199100.v1.1 MD15G1386100.v1.1
prunus_persica	Prupe.1G532800_v2.0.a1 Prupe.1G532800_v2.0.a1 Prupe.1G532800_v2.0.a1
pyrus_communis	pycom08g17290 pycom15g34630
rosa_chinensis	RchiOBHm_Chr7g0235511
rosa_laevigata	RLG00000001153
rosa_multiflora	Rmu_sc0002617.1_g000018 Rmu_sc0002892.1_g000021 Rmu_sc0039003.1_g000003 Rmu_sc0042677.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225940
rosa_rugosa	Rorug07G0291400
rosa_samantha	Rh7AG446500 Rh7BG418200 Rh7CG466500 Rh7DG435200
rosa_wichuraiana	Rw7G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	1062
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	3 cut(s)	8, 398, 555
AcvI	CACGTG	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	347, 706, 947
AfiI	CCNNNNNNNGG	6 cut(s)	191, 422, 707, 725, 757, 1051
AflIII	ACRYGT	1 cut(s)	948
AgsI	TTSAA	7 cut(s)	86, 241, 290, 474, 658, 841, 920
AjnI	CCWGG	2 cut(s)	190, 700
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	3 cut(s)	92, 171, 624
AluI	AGCT	3 cut(s)	92, 171, 624
Alw21I	GWGCWC	2 cut(s)	769, 865
Alw26I	GTCTC	1 cut(s)	36
Alw44I	GTGCAC	1 cut(s)	861
AoxI	GGCC	1 cut(s)	698
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	6 cut(s)	92, 257, 275, 437, 457, 941
ApoI	RAATTY	3 cut(s)	8, 398, 555
ArsI	GACNNNNNNTTYG	4 cut(s)	508, 540, 1064, 1096
AspA2I	CCTAGG	1 cut(s)	248
AspS9I	GGNCC	5 cut(s)	194, 536, 698, 776, 899
AsuHPI	GGTGA	4 cut(s)	318, 400, 477, 1004
AvaII	GGWCC	4 cut(s)	194, 536, 776, 899
AvrII	CCTAGG	1 cut(s)	248
AxyI	CCTNAGG	2 cut(s)	330, 1118
BaeGI	GKGCMC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	631
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	371, 564
Bbv12I	GWGCWC	2 cut(s)	769, 865
BbvI	GCAGC	6 cut(s)	79, 244, 262, 424, 469, 953
BccI	CCATC	7 cut(s)	146, 385, 412, 910, 925, 1096, 1100
BciT130I	CCWGG	2 cut(s)	192, 702
BciVI	GTATCC	1 cut(s)	968
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	5 cut(s)	249, 294, 383, 422, 602
BfmI	CTRYAG	4 cut(s)	438, 619, 734, 1083
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	1 cut(s)	968
BisI	GCNGC	7 cut(s)	93, 179, 258, 276, 438, 458, 942
BlnI	CCTAGG	1 cut(s)	248
BlpI	GCTNAGC	1 cut(s)	712
BlsI	GCNGC	7 cut(s)	94, 180, 259, 277, 439, 459, 943
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	192, 702
Bme18I	GGWCC	4 cut(s)	194, 536, 776, 899
BmgT120I	GGNCC	5 cut(s)	194, 536, 698, 776, 899
BmiI	GGNNCC	4 cut(s)	630, 699, 900, 956
BmrFI	CCNGG	2 cut(s)	192, 702
BmsI	GCATC	1 cut(s)	985
BpiI	GAAGAC	2 cut(s)	371, 564
BpmI	CTGGAG	1 cut(s)	1082
Bpu1102I	GCTNAGC	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	296
BsaAI	YACGTR	2 cut(s)	49, 985
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	248, 488, 724, 999
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	6 cut(s)	191, 422, 707, 725, 757, 1051
Bse1I	ACTGG	1 cut(s)	553
Bse21I	CCTNAGG	2 cut(s)	330, 1118
Bse3DI	GCAATG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	192, 702
BseDI	CCNNGG	4 cut(s)	248, 488, 724, 999
BseGI	GGATG	4 cut(s)	346, 588, 1111, 1129
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	6 cut(s)	191, 422, 707, 725, 757, 1051
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	2 cut(s)	344, 1132
BseNI	ACTGG	1 cut(s)	553
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	6 cut(s)	79, 244, 262, 424, 469, 953
BseYI	CCCAGC	1 cut(s)	624
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	700
BsiHKAI	GWGCWC	2 cut(s)	769, 865
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	9, 912
BslI	CCNNNNNNNGG	6 cut(s)	191, 422, 707, 725, 757, 1051
BsmAI	GTCTC	1 cut(s)	36
BsmFI	GGGAC	2 cut(s)	9, 912
BsmI	GAATGC	2 cut(s)	595, 884
BsnI	GGCC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	631, 769, 865
Bsp143I	GATC	2 cut(s)	3, 232
Bsp1720I	GCTNAGC	1 cut(s)	712
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	2 cut(s)	343, 1131
BspLI	GGNNCC	4 cut(s)	630, 699, 900, 956
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	4 cut(s)	248, 488, 724, 999
BssMI	GATC	2 cut(s)	3, 232
BssT1I	CCWWGG	3 cut(s)	248, 488, 999
Bst2UI	CCWGG	2 cut(s)	192, 702
Bst4CI	ACNGT	2 cut(s)	82, 620
Bst6I	CTCTTC	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	2 cut(s)	49, 985
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	330, 712, 1118
BstENI	CCTNNNNNAGG	4 cut(s)	420, 705, 723, 755
BstF5I	GGATG	4 cut(s)	346, 588, 1111, 1129
BstKTI	GATC	2 cut(s)	6, 235
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	2 cut(s)	3, 232
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 266, 275, 281, 443
BstNI	CCWGG	2 cut(s)	192, 702
BstNSI	RCATGY	2 cut(s)	284, 952
BstSCI	CCNGG	2 cut(s)	190, 700
BstSFI	CTRYAG	4 cut(s)	438, 619, 734, 1083
BstSLI	GKGCMC	1 cut(s)	865
BstSNI	TACGTA	1 cut(s)	985
BstV1I	GCAGC	6 cut(s)	79, 244, 262, 424, 469, 953
BstV2I	GAAGAC	2 cut(s)	371, 564
BstXI	CCANNNNNNTGG	2 cut(s)	1006, 1106
Bsu36I	CCTNAGG	2 cut(s)	330, 1118
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	1 cut(s)	700
BtsCI	GGATG	4 cut(s)	346, 588, 1111, 1129
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	5 cut(s)	194, 536, 698, 776, 899
Csp6I	GTAC	3 cut(s)	346, 705, 946
CviAII	CATG	4 cut(s)	281, 512, 691, 949
CviQI	GTAC	3 cut(s)	346, 705, 946
DdeI	CTNAG	3 cut(s)	330, 712, 1118
DpnI	GATC	2 cut(s)	5, 234
DpnII	GATC	2 cut(s)	3, 232
DraIII	CACNNNGTG	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
Eco105I	TACGTA	1 cut(s)	985
Eco130I	CCWWGG	3 cut(s)	248, 488, 999
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	4 cut(s)	194, 536, 776, 899
Eco72I	CACGTG	1 cut(s)	49
Eco81I	CCTNAGG	2 cut(s)	330, 1118
EcoNI	CCTNNNNNAGG	4 cut(s)	420, 705, 723, 755
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	398, 555
EcoRII	CCWGG	2 cut(s)	190, 700
EcoT14I	CCWWGG	3 cut(s)	248, 488, 999
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	3 cut(s)	248, 488, 999
FaeI	CATG	4 cut(s)	284, 515, 694, 952
FaqI	GGGAC	2 cut(s)	9, 912
FatI	CATG	4 cut(s)	280, 511, 690, 948
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	1062
Fnu4HI	GCNGC	7 cut(s)	93, 179, 258, 276, 438, 458, 942
FokI	GGATG	3 cut(s)	353, 595, 1118
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	7 cut(s)	93, 179, 258, 276, 438, 458, 942
FspBI	CTAG	5 cut(s)	249, 294, 383, 422, 602
GluI	GCNGC	7 cut(s)	93, 179, 258, 276, 438, 458, 942
GsaI	CCCAGC	1 cut(s)	628
GsuI	CTGGAG	1 cut(s)	1082
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	1 cut(s)	39
Hin1II	CATG	4 cut(s)	284, 515, 694, 952
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	3 cut(s)	309, 1064, 1079
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	4 cut(s)	318, 400, 477, 1004
Hpy166II	GTNNAC	3 cut(s)	110, 863, 1063
Hpy188I	TCNGA	5 cut(s)	372, 546, 725, 871, 1026
Hpy188III	TCNNGA	4 cut(s)	383, 580, 602, 1099
Hpy8I	GTNNAC	3 cut(s)	110, 863, 1063
HpyAV	CCTTC	3 cut(s)	247, 331, 755
HpyCH4III	ACNGT	2 cut(s)	82, 620
HpyCH4IV	ACGT	4 cut(s)	48, 223, 984, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 266, 275, 281, 443
HpyF3I	CTNAG	3 cut(s)	330, 712, 1118
HpySE526I	ACGT	4 cut(s)	48, 223, 984, 1028
Hsp92II	CATG	4 cut(s)	284, 515, 694, 952
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 232
LmnI	GCTCC	1 cut(s)	634
Lsp1109I	GCAGC	6 cut(s)	79, 244, 262, 424, 469, 953
LweI	GCATC	1 cut(s)	985
MaeI	CTAG	5 cut(s)	249, 294, 383, 422, 602
MaeII	ACGT	4 cut(s)	48, 223, 984, 1028
MaeIII	GTNAC	3 cut(s)	464, 514, 660
MalI	GATC	2 cut(s)	5, 234
MboI	GATC	2 cut(s)	3, 232
MboII	GAAGA	6 cut(s)	98, 371, 564, 598, 781, 842
MfeI	CAATTG	1 cut(s)	684
MhlI	GDGCHC	3 cut(s)	631, 769, 865
MluCI	AATT	9 cut(s)	8, 67, 264, 398, 474, 555, 652, 684, 844
MlyI	GAGTC	3 cut(s)	303, 1058, 1088
MmeI	TCCRAC	3 cut(s)	343, 563, 569
MseI	TTAA	1 cut(s)	875
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	192, 702
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	595, 884
MvaI	CCWGG	2 cut(s)	192, 702
MwoI	GCNNNNNNNGC	5 cut(s)	227, 266, 275, 281, 443
NdeII	GATC	2 cut(s)	3, 232
NlaIII	CATG	4 cut(s)	284, 515, 694, 952
NlaIV	GGNNCC	4 cut(s)	630, 699, 900, 956
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	2 cut(s)	284, 952
OliI	CACNNNNGTG	1 cut(s)	51
PciI	ACATGT	1 cut(s)	948
PctI	GAATGC	2 cut(s)	595, 884
PkrI	GCNGC	7 cut(s)	94, 180, 259, 277, 439, 459, 943
PleI	GAGTC	3 cut(s)	303, 1058, 1087
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	3 cut(s)	303, 1058, 1087
Ppu21I	YACGTR	2 cut(s)	49, 985
PscI	ACATGT	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	190, 700
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	624
PspGI	CCWGG	2 cut(s)	190, 700
PspN4I	GGNNCC	4 cut(s)	630, 699, 900, 956
PspPI	GGNCC	5 cut(s)	194, 536, 698, 776, 899
PstI	CTGCAG	1 cut(s)	442
RsaI	GTAC	3 cut(s)	347, 706, 947
RsaNI	GTAC	3 cut(s)	346, 705, 946
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	875
SatI	GCNGC	7 cut(s)	93, 179, 258, 276, 438, 458, 942
Sau3AI	GATC	2 cut(s)	3, 232
Sau96I	GGNCC	5 cut(s)	194, 536, 698, 776, 899
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	3 cut(s)	303, 1058, 1088
ScrFI	CCNGG	2 cut(s)	192, 702
SduI	GDGCHC	3 cut(s)	631, 769, 865
SfaNI	GCATC	1 cut(s)	985
SfcI	CTRYAG	4 cut(s)	438, 619, 734, 1083
SinI	GGWCC	4 cut(s)	194, 536, 776, 899
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SnaBI	TACGTA	1 cut(s)	985
Sse9I	AATT	9 cut(s)	8, 67, 264, 398, 474, 555, 652, 684, 844
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	5 cut(s)	249, 294, 383, 422, 602
StyD4I	CCNGG	2 cut(s)	190, 700
StyI	CCWWGG	3 cut(s)	248, 488, 999
TaaI	ACNGT	2 cut(s)	82, 620
TaiI	ACGT	4 cut(s)	51, 226, 987, 1031
TaqI	TCGA	1 cut(s)	808
TasI	AATT	9 cut(s)	8, 67, 264, 398, 474, 555, 652, 684, 844
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	875
Tru9I	TTAA	1 cut(s)	875
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	6 cut(s)	92, 257, 275, 437, 457, 941
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	8 cut(s)	48, 125, 500, 564, 599, 811, 843, 1010
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	4 cut(s)	194, 536, 776, 899
XagI	CCTNNNNNAGG	4 cut(s)	420, 705, 723, 755
XapI	RAATTY	3 cut(s)	8, 398, 555
XbaI	TCTAGA	2 cut(s)	382, 601
XceI	RCATGY	2 cut(s)	284, 952
XmaJI	CCTAGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	1062
XspI	CTAG	5 cut(s)	249, 294, 383, 422, 602
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.