Rmu_sc0042677.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042677.1
OG0005981
Physical Location & Seq
Forward (+)
1 .. 860
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042677.1_g000001.1.cds

Sequence Viewer

Length: 366 bp
agagacttgcaggggaataagctaactggtcaaatcccggatgagattggcagctgttcttctcttatatatctggatttgtctgacaataatctgtctggagacatacccttctcggtttcaaagcttaagaagcttgaggttttgaatttgaagaacaatcagttgactggtcctatgcctacgactcttacccaaattccaaaccttaaaactcttgatcttgctcggaaccagctcactggtgagataccaaggctaatatattggaatgaagttttgcagtacctcggattgcgaggcaactctttgactggagcactgtcccctgatatatgtcaattaactggtctgtggtacttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

5.24

Isoelectric Point (pI)

20.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 148, 198
AfaI GTAC 2 cut(s) 287, 359
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 123, 148, 154
AluBI AGCT 5 cut(s) 22, 54, 127, 136, 238
AluI AGCT 5 cut(s) 22, 54, 127, 136, 238
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 148, 198
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 63
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 120, 336
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 254, 289
Bse1I ACTGG 5 cut(s) 31, 175, 247, 319, 352
BseDI CCNNGG 2 cut(s) 254, 289
BseGI GGATG 1 cut(s) 46
BseNI ACTGG 5 cut(s) 31, 175, 247, 319, 352
BseXI GCAGC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 128
BsrI ACTGG 5 cut(s) 31, 175, 247, 319, 352
BssECI CCNNGG 2 cut(s) 254, 289
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 240, 320
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 286, 358
CviJI RGCY 6 cut(s) 22, 54, 127, 136, 238, 259
CviKI_1 RGCY 6 cut(s) 22, 54, 127, 136, 238, 259
CviQI GTAC 2 cut(s) 286, 358
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaiI YATR 7 cut(s) 68, 70, 107, 179, 265, 335, 337
FaqI GGGAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 52
GsuI CTGGAG 2 cut(s) 120, 336
HapII CCGG 1 cut(s) 38
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 2 cut(s) 125, 134
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 85, 231, 293
Hpy188III TCNNGA 3 cut(s) 74, 99, 218
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 10, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 63
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 51, 166
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 3 cut(s) 148, 198, 341
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 3 cut(s) 133, 293, 299
MseI TTAA 3 cut(s) 129, 210, 344
MspA1I CMGCKG 1 cut(s) 54
MspCI CTTAAG 1 cut(s) 128
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 38
NdeII GATC 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 2 cut(s) 287, 359
RsaNI GTAC 2 cut(s) 286, 358
SaqAI TTAA 3 cut(s) 129, 210, 344
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 322
SetI ASST 8 cut(s) 24, 56, 129, 138, 144, 210, 240, 291
SinI GGWCC 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 128, 137
SmoI CTYRAG 2 cut(s) 128, 137
Sse9I AATT 3 cut(s) 148, 198, 341
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 324
TasI AATT 3 cut(s) 148, 198, 341
Tru1I TTAA 3 cut(s) 129, 210, 344
Tru9I TTAA 3 cut(s) 129, 210, 344
TscAI CASTG 2 cut(s) 247, 327
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 2 cut(s) 247, 327
Vha464I CTTAAG 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 148, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.