Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

35797829 .. 35799752

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGCTTCATCGTCGCTATTTTCATCGTCTTCGTTCCAAGGGGTCACGTCGTTTCAGAGCACAAAGTTATGCGCTAGTTCTTCAAACTTTGTCTACAGACAACCAATGCACCTGAAGAGATCGTCACAAAATAACGGGACGGTTTCCTGCCGGGCATTGGAATTTGACAAATCATCTTCCTCCTATTCGGTGGGGAAGGAATTTCAAGTTACTGATGTGATTGAGGCTCAGCAATTCGACAGAGATCTTCTCGGAGCGATATTTGATGTTGCACGAGAGATGGAGAAGATTGAGAAGAAGTCACCAGGAAGTCAAATTCTGAAAGGTTATCTTATGGCTACTCTCTTCTACGAGCCGTCCACGAGGACTAGGCTTTCCTTTGAGTCTGCAATGAGGCGGTTAGGGGGCGAGGTCTTGACAACTGAAAATGCAAGAGAGTTCTCTTCGGCAGCTAAAGGAGAAACCCTCGAAGATACTATAAGAACTGTTGAGGGTTACTCGGATATAATTGTGATGCGGCACTTCGAGAGCGGTGCAGCCAAAAGAGCTGCTGCAACTGCTGGCATTCCTGTCATCAATGCAGGAGATGGTCCTGGACAACACCCAACTCAGGCTCTTTTAGATGTCTATACTATTGAAAGAGAGATAGGAAAACTGGATGGTATTAAAGTTGCACTTGTTGGAGATCTTGCTAACGGAAGGACAGTGCGCTCACTTGCATACTTGCTCGCCAGGTATAACGATGTGAAGATCTACTTTGTCTCTCCTGATGTGGTAAAGATGAAGAATGATATAAAAGATTATTTGACATCAAGGAACATTCAGTGGGAAGAAAGTGCGGACTTAATGGAAGTTGCTTCTAAGTGTGATGTTGTGTATCAAACTCGCATTCAGCGTGAACGATTTGGAGAGAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGATAGTCGTGTGTTAGAGGTGATGCAGAAGCACGCTGTGGTCATGCACCCTCTGCCTAGACTTGACGAGATTACCGTGGATGTTGATGGGGATACACGAGCTGCCTATTTCAGACAAGCAAAGAACGGCCTATATATAAGGATGGCTCTCTTGAAACTCCTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

378

Amino Acids

42.17

Weight (kDa)

6.98

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	73 - 214	5.1e-46	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	221 - 372	1.1e-32	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	4 cut(s)	400, 520, 534, 842
AcsI	RAATTY	3 cut(s)	164, 203, 318
AcuI	CTGAAG	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	994
AfaI	GTAC	1 cut(s)	950
AfiI	CCNNNNNNNGG	2 cut(s)	160, 613
AgsI	TTSAA	4 cut(s)	87, 209, 641, 1111
AjiI	CACGTC	1 cut(s)	51
AjnI	CCWGG	3 cut(s)	307, 595, 734
AluBI	AGCT	4 cut(s)	455, 551, 938, 1058
AluI	AGCT	4 cut(s)	455, 551, 938, 1058
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	939
AoxI	GGCC	1 cut(s)	1084
ApeKI	GCWGC	6 cut(s)	5, 452, 539, 551, 554, 1058
ApoI	RAATTY	3 cut(s)	164, 203, 318
AspLEI	GCGC	2 cut(s)	77, 714
AspS9I	GGNCC	1 cut(s)	593
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	297, 988
AvaI	CYCGRG	1 cut(s)	939
AvaII	GGWCC	1 cut(s)	593
BauI	CACGAG	3 cut(s)	276, 364, 1053
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	464, 538, 541, 551, 1045
BccI	CCATC	5 cut(s)	277, 584, 656, 1037, 1093
BceAI	ACGGC	2 cut(s)	343, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	3 cut(s)	309, 597, 736
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	769
BfaI	CTAG	3 cut(s)	78, 372, 1014
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	1042
BglII	AGATCT	3 cut(s)	247, 688, 753
BisI	GCNGC	7 cut(s)	6, 453, 521, 540, 552, 555, 1059
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	7 cut(s)	7, 454, 522, 541, 553, 556, 1060
Bme1390I	CCNGG	4 cut(s)	155, 309, 597, 736
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	939
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	593
BmrFI	CCNGG	4 cut(s)	155, 309, 597, 736
BmsI	GCATC	2 cut(s)	507, 969
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	6 cut(s)	237, 269, 453, 485, 485, 517
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	40, 1032
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 613
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	309, 597, 736
BseDI	CCNNGG	2 cut(s)	40, 1032
BseGI	GGATG	3 cut(s)	667, 1042, 1104
BseLI	CCNNNNNNNGG	2 cut(s)	160, 613
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	245, 626
BseNI	ACTGG	1 cut(s)	663
BseXI	GCAGC	5 cut(s)	464, 538, 541, 551, 1045
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	1086
BsiHKAI	GWGCWC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	939
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	160, 613
BsmAI	GTCTC	1 cut(s)	769
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	2 cut(s)	567, 891
BsnI	GGCC	1 cut(s)	1086
BsoBI	CYCGRG	1 cut(s)	939
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	122, 247, 688, 753
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	400, 520, 534, 842
BspANI	GGCC	1 cut(s)	1086
BspCNI	CTCAG	2 cut(s)	244, 625
BsrBI	CCGCTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	2 cut(s)	40, 1032
BssMI	GATC	4 cut(s)	122, 247, 688, 753
BssSI	CACGAG	3 cut(s)	276, 364, 1053
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	3 cut(s)	276, 364, 1053
Bst2UI	CCWGG	3 cut(s)	309, 597, 736
Bst4CI	ACNGT	4 cut(s)	145, 490, 709, 1033
Bst6I	CTCTTC	3 cut(s)	113, 353, 451
BstAPI	GCANNNNNTGC	1 cut(s)	1009
BstC8I	GCNNGC	3 cut(s)	565, 732, 990
BstDEI	CTNAG	3 cut(s)	231, 612, 864
BstDSI	CCRYGG	1 cut(s)	1032
BstF5I	GGATG	3 cut(s)	667, 1042, 1104
BstHHI	GCGC	2 cut(s)	77, 714
BstKTI	GATC	4 cut(s)	125, 250, 691, 756
BstMAI	GTCTC	1 cut(s)	769
BstMBI	GATC	4 cut(s)	122, 247, 688, 753
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 560, 1009
BstNI	CCWGG	3 cut(s)	309, 597, 736
BstSCI	CCNGG	4 cut(s)	153, 307, 595, 734
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	5 cut(s)	464, 538, 541, 551, 1045
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	3 cut(s)	247, 688, 753
BstYI	RGATCY	3 cut(s)	247, 688, 753
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	1086
BtgI	CCRYGG	1 cut(s)	1032
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	667, 1042, 1104
BtsIMutI	CAGTG	2 cut(s)	714, 833
Cac8I	GCNNGC	3 cut(s)	565, 732, 990
CfoI	GCGC	2 cut(s)	77, 714
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	1 cut(s)	949
CviAII	CATG	1 cut(s)	1000
CviQI	GTAC	1 cut(s)	949
DdeI	CTNAG	3 cut(s)	231, 612, 864
DpnI	GATC	4 cut(s)	124, 249, 690, 755
DpnII	GATC	4 cut(s)	122, 247, 688, 753
DraIII	CACNNNGTG	1 cut(s)	994
Eam1104I	CTCTTC	3 cut(s)	113, 353, 451
EarI	CTCTTC	3 cut(s)	113, 353, 451
Eco130I	CCWWGG	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	939
EcoRII	CCWGG	3 cut(s)	307, 595, 734
EcoT14I	CCWWGG	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	1003
FalI	AAGNNNNNCTT	6 cut(s)	318, 350, 663, 695, 743, 775
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	999
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	6, 453, 521, 540, 552, 555, 1059
FokI	GGATG	3 cut(s)	674, 1049, 1111
Fsp4HI	GCNGC	7 cut(s)	6, 453, 521, 540, 552, 555, 1059
FspBI	CTAG	3 cut(s)	78, 372, 1014
GlaI	GCGC	2 cut(s)	76, 713
GluI	GCNGC	7 cut(s)	6, 453, 521, 540, 552, 555, 1059
HaeIII	GGCC	1 cut(s)	1086
HapII	CCGG	1 cut(s)	154
HhaI	GCGC	2 cut(s)	77, 714
Hin1II	CATG	1 cut(s)	1003
Hin6I	GCGC	2 cut(s)	75, 712
HinP1I	GCGC	2 cut(s)	75, 712
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	297, 988
Hpy166II	GTNNAC	3 cut(s)	97, 363, 902
Hpy188I	TCNGA	5 cut(s)	60, 257, 324, 505, 1070
Hpy188III	TCNNGA	4 cut(s)	418, 529, 770, 1108
Hpy8I	GTNNAC	3 cut(s)	97, 363, 902
Hpy99I	CGWCG	2 cut(s)	19, 55
HpyAV	CCTTC	2 cut(s)	193, 696
HpyCH4III	ACNGT	4 cut(s)	145, 490, 709, 1033
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 560, 1009
HpyF3I	CTNAG	3 cut(s)	231, 612, 864
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	1003
HspAI	GCGC	2 cut(s)	75, 712
Kzo9I	GATC	4 cut(s)	122, 247, 688, 753
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	5 cut(s)	464, 538, 541, 551, 1045
LweI	GCATC	2 cut(s)	507, 969
MaeI	CTAG	3 cut(s)	78, 372, 1014
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	5 cut(s)	46, 126, 211, 303, 497
MalI	GATC	4 cut(s)	124, 249, 690, 755
MbiI	CCGCTC	1 cut(s)	534
MboI	GATC	4 cut(s)	122, 247, 688, 753
MflI	RGATCY	3 cut(s)	247, 688, 753
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	6 cut(s)	164, 203, 236, 318, 510, 918
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	664
MseI	TTAA	2 cut(s)	669, 848
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	4 cut(s)	155, 309, 597, 736
Mva1269I	GAATGC	2 cut(s)	567, 891
MvaI	CCWGG	3 cut(s)	309, 597, 736
MwoI	GCNNNNNNNGC	3 cut(s)	548, 560, 1009
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	122, 247, 688, 753
NlaIII	CATG	1 cut(s)	1003
NmuCI	GTSAC	3 cut(s)	46, 126, 303
PaeR7I	CTCGAG	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	2 cut(s)	895, 1029
PctI	GAATGC	2 cut(s)	567, 891
PfoI	TCCNGGA	1 cut(s)	595
PkrI	GCNGC	7 cut(s)	7, 454, 522, 541, 553, 556, 1060
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	307, 595, 734
PspGI	CCWGG	3 cut(s)	307, 595, 734
PspPI	GGNCC	1 cut(s)	593
PspXI	VCTCGAGB	1 cut(s)	939
PsuI	RGATCY	3 cut(s)	247, 688, 753
RsaI	GTAC	1 cut(s)	950
RsaNI	GTAC	1 cut(s)	949
SaqAI	TTAA	2 cut(s)	669, 848
SatI	GCNGC	7 cut(s)	6, 453, 521, 540, 552, 555, 1059
Sau3AI	GATC	4 cut(s)	122, 247, 688, 753
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	4 cut(s)	155, 309, 597, 736
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	507, 969
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	593
SlaI	CTCGAG	1 cut(s)	939
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
Sse9I	AATT	6 cut(s)	164, 203, 236, 318, 510, 918
SsiI	CCGC	4 cut(s)	400, 520, 534, 842
SspMI	CTAG	3 cut(s)	78, 372, 1014
StyD4I	CCNGG	4 cut(s)	153, 307, 595, 734
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	4 cut(s)	145, 490, 709, 1033
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	240, 471, 528, 940
TasI	AATT	6 cut(s)	164, 203, 236, 318, 510, 918
TatI	WGTACW	1 cut(s)	948
TauI	GCSGC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	669, 848
Tru9I	TTAA	2 cut(s)	669, 848
TscAI	CASTG	2 cut(s)	714, 833
TseFI	GTSAC	3 cut(s)	46, 126, 303
TseI	GCWGC	6 cut(s)	5, 452, 539, 551, 554, 1058
Tsp45I	GTSAC	3 cut(s)	46, 126, 303
TspDTI	ATGAA	3 cut(s)	15, 800, 945
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	714, 833
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	3 cut(s)	164, 203, 318
XhoI	CTCGAG	1 cut(s)	939
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	3 cut(s)	78, 372, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.