pycom15g35850

Glucuronoxylan 4-O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009914
Physical Location & Seq
Forward (+)
35930792 .. 35931965
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGGATCTGGTAATATGCCATCATCGCTTGAGTAACTCTCAAGGGTCAGAAACAAACAATAAACCCCTGTCTCCTCCCTCTCTTCCATTCCCCACCACTTCTCCACCTTCTGTTCATAAAACCTCAGATCAACATTATCTCCTCGGTCCCCCCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCTCATCTCATCAAGCACCATGAGGTCCAAACCTCAATGTGGCATCAGTCTCAAGGTCATCCTCCTCTGCTGCTGCTTCATCTTCCTCTTCACTGTCTTCATTGTCAGATCAACCTTCTCATCGTCACTATTTCCGTCACCGTCCACGGCCAATTCCTCACTATCCCATCTCATGCCAAACCCTAAACCCCAACAACAACAACAACAACAACAACAACAACCACCATGCGATCAACCATTCACCCCAACATGCACCAAAATCCCACCATCCCTAGCCCACGCCATCATCCACTACGCCACAACAAACGTCACGCCACAACAAACCATCAAAGAAGTCTCCGTCTCCGCCGCGATCCTTTCCAAAAAATCACCCTGCAACTTTCTAGTCTTCGGCCTCGGCCGCGACAGCCTCATGTGGACGGCTCTCAACCACGGCGGAAGAACCATCTTCCTCGAAGAAGACAATTCATGGATCGACCAAATCAAACAGAAGCTGCCGGGCTTAGAGGCCTACCACGTGACATACGACACCAAGGTCCACCAAGCGGACAAGCTCATGGAGATCGGAAGGAAGGAAGAGTGCAAAGCTGTTGGGGATCCGAGGTTTTCAAAGTGCGAGCTGGCGCTCAAGAACTTGCCGAGCGATGTGTACGATATCGAGTGGGATCTGATCATGGTGGATGCGCCGACGGGGTACTTCGACGGAGCTCCGGGAAGAATGGGCGCCATATACACGGCGGGGCTGATGGGGAGGAACAGGGAGGAGGGGGAAACTCATGTGTTTGTACATGATGTGAATAGAGTGGTTGAGGACAGCTTCTCCAAGGCTTTTCTCTGCGAGGGGTACTTGACGGAGCAGGAGGGCCTGCTCAGGCACTTCACTATTCCCAGTCACAGGGCTCGATTAGGTAGACCATTTTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polysacc_synt_4

Protein Analysis

370

Amino Acids

40.97

Weight (kDa)

7.2

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 171 - 354 8e-79 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 905
AccI GTMKAC 1 cut(s) 1093
AccII CGCG 2 cut(s) 533, 585
AciI CCGC 6 cut(s) 528, 531, 583, 618, 728, 920
AclWI GGATC 6 cut(s) 12, 529, 662, 773, 786, 855
AcoI YGGCCR 2 cut(s) 330, 580
AcvI CACGTG 1 cut(s) 700
AcyI GRCGYC 1 cut(s) 906
AfaI GTAC 4 cut(s) 833, 878, 969, 1028
AfiI CCNNNNNNNGG 3 cut(s) 221, 727, 1077
AgsI TTSAA 1 cut(s) 792
AluBI AGCT 6 cut(s) 676, 736, 770, 802, 890, 999
AluI AGCT 6 cut(s) 676, 736, 770, 802, 890, 999
Alw21I GWGCWC 1 cut(s) 892
Alw26I GTCTC 4 cut(s) 75, 236, 523, 529
AlwI GGATC 6 cut(s) 12, 529, 662, 773, 786, 855
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 5 cut(s) 330, 574, 580, 690, 1045
ApeKI GCWGC 3 cut(s) 252, 255, 676
AspLEI GCGC 3 cut(s) 808, 868, 908
AspS9I GGNCC 4 cut(s) 146, 207, 718, 1045
AsuC2I CCSGG 2 cut(s) 681, 894
AsuHPI GGTGA 3 cut(s) 312, 415, 543
AvaII GGWCC 3 cut(s) 146, 207, 718
BamHI GGATCC 1 cut(s) 778
BanI GGYRCC 1 cut(s) 905
BanII GRGCYC 2 cut(s) 892, 1084
BbrPI CACGTG 1 cut(s) 700
BbsI GAAGAC 3 cut(s) 271, 562, 648
Bbv12I GWGCWC 1 cut(s) 892
BbvI GCAGC 3 cut(s) 239, 242, 663
BccI CCATC 7 cut(s) 27, 357, 457, 473, 515, 635, 922
BceAI ACGGC 4 cut(s) 345, 618, 631, 933
BclI TGATCA 1 cut(s) 852
BcnI CCSGG 2 cut(s) 681, 894
BcoDI GTCTC 4 cut(s) 75, 236, 523, 529
BfaI CTAG 2 cut(s) 455, 566
BfoI RGCGCY 2 cut(s) 809, 909
BisI GCNGC 5 cut(s) 253, 256, 531, 583, 677
BlsI GCNGC 5 cut(s) 254, 257, 532, 584, 678
Bme1390I CCNGG 2 cut(s) 681, 894
Bme18I GGWCC 3 cut(s) 146, 207, 718
BmgT120I GGNCC 4 cut(s) 146, 207, 718, 1045
BmiI GGNNCC 3 cut(s) 148, 780, 907
BmrFI CCNGG 2 cut(s) 681, 894
BmrI ACTGGG 1 cut(s) 1065
BmsI GCATC 2 cut(s) 234, 853
BmuI ACTGGG 1 cut(s) 1065
BpiI GAAGAC 3 cut(s) 271, 562, 648
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bpu10I CCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 4 cut(s) 24, 49, 218, 794
BpuMI CCSGG 2 cut(s) 681, 894
BsaAI YACGTR 1 cut(s) 700
BsaHI GRCGYC 1 cut(s) 906
BsaJI CCNNGG 7 cut(s) 142, 327, 577, 613, 714, 782, 1005
BsaXI ACNNNNNCTCC 6 cut(s) 85, 115, 123, 153, 986, 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 727, 1077
Bse1I ACTGG 1 cut(s) 1071
BseDI CCNNGG 7 cut(s) 142, 327, 577, 613, 714, 782, 1005
BseGI GGATG 4 cut(s) 240, 449, 468, 868
BseLI CCNNNNNNNGG 3 cut(s) 221, 727, 1077
BseMII CTCAG 2 cut(s) 138, 1066
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 5 cut(s) 63, 131, 159, 236, 959
BseX3I CGGCCG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 239, 242, 663
Bsh1236I CGCG 2 cut(s) 533, 585
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 5 cut(s) 332, 576, 582, 692, 1047
BshNI GGYRCC 1 cut(s) 905
BsiEI CGRYCG 1 cut(s) 583
BsiHKAI GWGCWC 1 cut(s) 892
BsiSI CCGG 2 cut(s) 680, 893
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 221, 727, 1077
BsmAI GTCTC 4 cut(s) 75, 236, 523, 529
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 5 cut(s) 332, 576, 582, 692, 1047
Bsp1286I GDGCHC 2 cut(s) 892, 1084
Bsp1407I TGTACA 1 cut(s) 967
BspACI CCGC 6 cut(s) 528, 531, 583, 618, 728, 920
BspANI GGCC 5 cut(s) 332, 576, 582, 692, 1047
BspCNI CTCAG 2 cut(s) 137, 1065
BspFNI CGCG 2 cut(s) 533, 585
BspLI GGNNCC 3 cut(s) 148, 780, 907
BspPI GGATC 6 cut(s) 12, 529, 662, 773, 786, 855
BspT107I GGYRCC 1 cut(s) 905
BsrGI TGTACA 1 cut(s) 967
BsrI ACTGG 1 cut(s) 1071
BssECI CCNNGG 7 cut(s) 142, 327, 577, 613, 714, 782, 1005
BssNI GRCGYC 1 cut(s) 906
BssT1I CCWWGG 2 cut(s) 714, 1005
Bst4CI ACNGT 2 cut(s) 277, 324
Bst6I CTCTTC 3 cut(s) 87, 275, 753
BstACI GRCGYC 1 cut(s) 906
BstAUI TGTACA 1 cut(s) 967
BstBAI YACGTR 1 cut(s) 700
BstC8I GCNNGC 3 cut(s) 800, 804, 1049
BstDEI CTNAG 4 cut(s) 124, 685, 1052, 1107
BstDSI CCRYGG 2 cut(s) 327, 613
BstF5I GGATG 4 cut(s) 240, 449, 468, 868
BstFNI CGCG 2 cut(s) 533, 585
BstH2I RGCGCY 2 cut(s) 809, 909
BstHHI GCGC 3 cut(s) 808, 868, 908
BstMAI GTCTC 4 cut(s) 75, 236, 523, 529
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 3 cut(s) 24, 582, 588
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 2 cut(s) 679, 892
BstUI CGCG 2 cut(s) 533, 585
BstV1I GCAGC 3 cut(s) 239, 242, 663
BstV2I GAAGAC 3 cut(s) 271, 562, 648
BstX2I RGATCY 3 cut(s) 4, 778, 847
BstYI RGATCY 3 cut(s) 4, 778, 847
BstZI CGGCCG 1 cut(s) 580
BsuRI GGCC 5 cut(s) 332, 576, 582, 692, 1047
BtgI CCRYGG 2 cut(s) 327, 613
BtgZI GCGATG 2 cut(s) 8, 840
BtsCI GGATG 4 cut(s) 240, 449, 468, 868
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 800, 804, 1049
CaiI CAGNNNCTG 1 cut(s) 676
CfoI GCGC 3 cut(s) 808, 868, 908
Cfr13I GGNCC 4 cut(s) 146, 207, 718, 1045
Csp6I GTAC 4 cut(s) 832, 877, 968, 1027
CviQI GTAC 4 cut(s) 832, 877, 968, 1027
DdeI CTNAG 4 cut(s) 124, 685, 1052, 1107
DinI GGCGCC 1 cut(s) 907
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 2 cut(s) 330, 580
EagI CGGCCG 1 cut(s) 580
Eam1104I CTCTTC 3 cut(s) 87, 275, 753
EarI CTCTTC 3 cut(s) 87, 275, 753
EciI GGCGGA 2 cut(s) 517, 633
Ecl136II GAGCTC 1 cut(s) 890
EclXI CGGCCG 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 714, 1005
Eco147I AGGCCT 1 cut(s) 692
Eco24I GRGCYC 2 cut(s) 892, 1084
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 3 cut(s) 146, 207, 718
Eco52I CGGCCG 1 cut(s) 580
Eco53kI GAGCTC 1 cut(s) 890
Eco72I CACGTG 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 890
EcoO109I RGGNCCY 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 2 cut(s) 714, 1005
EcoT38I GRGCYC 2 cut(s) 892, 1084
EgeI GGCGCC 1 cut(s) 907
EheI GGCGCC 1 cut(s) 907
ErhI CCWWGG 2 cut(s) 714, 1005
Esp3I CGTCTC 1 cut(s) 529
FaqI GGGAC 1 cut(s) 132
FauI CCCGC 1 cut(s) 913
FbaI TGATCA 1 cut(s) 852
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 5 cut(s) 253, 256, 531, 583, 677
FokI GGATG 4 cut(s) 227, 436, 455, 875
FriOI GRGCYC 2 cut(s) 892, 1084
Fsp4HI GCNGC 5 cut(s) 253, 256, 531, 583, 677
FspBI CTAG 2 cut(s) 455, 566
GlaI GCGC 3 cut(s) 807, 867, 907
GluI GCNGC 5 cut(s) 253, 256, 531, 583, 677
HaeII RGCGCY 2 cut(s) 809, 909
HaeIII GGCC 5 cut(s) 332, 576, 582, 692, 1047
HapII CCGG 2 cut(s) 680, 893
HhaI GCGC 3 cut(s) 808, 868, 908
Hin1I GRCGYC 1 cut(s) 906
Hin6I GCGC 3 cut(s) 806, 866, 906
HinP1I GCGC 3 cut(s) 806, 866, 906
HpaII CCGG 2 cut(s) 680, 893
HphI GGTGA 3 cut(s) 312, 415, 543
Hpy166II GTNNAC 5 cut(s) 327, 600, 721, 832, 1094
Hpy188I TCNGA 6 cut(s) 49, 127, 290, 749, 783, 852
Hpy188III TCNNGA 1 cut(s) 811
Hpy8I GTNNAC 5 cut(s) 327, 600, 721, 832, 1094
Hpy99I CGWCG 2 cut(s) 874, 887
HpyAV CCTTC 4 cut(s) 117, 307, 744, 748
HpyCH4III ACNGT 2 cut(s) 277, 324
HpyCH4IV ACGT 2 cut(s) 489, 699
HpyCH4V TGCA 3 cut(s) 435, 558, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 582, 588
HpyF3I CTNAG 4 cut(s) 124, 685, 1052, 1107
HpySE526I ACGT 2 cut(s) 489, 699
Hsp92I GRCGYC 1 cut(s) 906
HspAI GCGC 3 cut(s) 806, 866, 906
KasI GGCGCC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 852
LmnI GCTCC 3 cut(s) 887, 895, 1036
Lsp1109I GCAGC 3 cut(s) 239, 242, 663
LweI GCATC 2 cut(s) 234, 853
MaeI CTAG 2 cut(s) 455, 566
MaeII ACGT 2 cut(s) 489, 699
MaeIII GTNAC 6 cut(s) 32, 306, 318, 490, 700, 1073
MflI RGATCY 3 cut(s) 4, 778, 847
MhlI GDGCHC 2 cut(s) 892, 1084
MluCI AATT 2 cut(s) 334, 646
Mly113I GGCGCC 1 cut(s) 906
MspI CCGG 2 cut(s) 680, 893
MspR9I CCNGG 2 cut(s) 681, 894
MvnI CGCG 2 cut(s) 533, 585
MwoI GCNNNNNNNGC 3 cut(s) 24, 582, 588
NarI GGCGCC 1 cut(s) 906
NciI CCSGG 2 cut(s) 681, 894
NlaIV GGNNCC 3 cut(s) 148, 780, 907
NmeAIII GCCGAG 2 cut(s) 558, 846
NmuCI GTSAC 5 cut(s) 306, 318, 490, 700, 1073
NspI RCATGY 1 cut(s) 435
PceI AGGCCT 1 cut(s) 692
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 892
PkrI GCNGC 5 cut(s) 254, 257, 532, 584, 678
PluTI GGCGCC 1 cut(s) 909
PmaCI CACGTG 1 cut(s) 700
PmlI CACGTG 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 700
Psp124BI GAGCTC 1 cut(s) 892
PspCI CACGTG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 148, 780, 907
PspPI GGNCC 4 cut(s) 146, 207, 718, 1045
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 3 cut(s) 4, 778, 847
RsaI GTAC 4 cut(s) 833, 878, 969, 1028
RsaNI GTAC 4 cut(s) 832, 877, 968, 1027
SacI GAGCTC 1 cut(s) 892
SatI GCNGC 5 cut(s) 253, 256, 531, 583, 677
Sau96I GGNCC 4 cut(s) 146, 207, 718, 1045
ScrFI CCNGG 2 cut(s) 681, 894
SduI GDGCHC 2 cut(s) 892, 1084
SfaNI GCATC 2 cut(s) 234, 853
SfoI GGCGCC 1 cut(s) 907
SinI GGWCC 3 cut(s) 146, 207, 718
SmlI CTYRAG 4 cut(s) 28, 39, 233, 809
SmoI CTYRAG 4 cut(s) 28, 39, 233, 809
Sse9I AATT 2 cut(s) 334, 646
SseBI AGGCCT 1 cut(s) 692
SsiI CCGC 6 cut(s) 528, 531, 583, 618, 728, 920
SspDI GGCGCC 1 cut(s) 905
SspMI CTAG 2 cut(s) 455, 566
SstI GAGCTC 1 cut(s) 892
StuI AGGCCT 1 cut(s) 692
StyD4I CCNGG 2 cut(s) 679, 892
StyI CCWWGG 2 cut(s) 714, 1005
TaaI ACNGT 2 cut(s) 277, 324
TaiI ACGT 2 cut(s) 492, 702
TaqI TCGA 5 cut(s) 636, 657, 840, 882, 1084
TaqII GACCGA 1 cut(s) 134
TasI AATT 2 cut(s) 334, 646
TatI WGTACW 1 cut(s) 967
TauI GCSGC 2 cut(s) 533, 585
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 5 cut(s) 306, 318, 490, 700, 1073
TseI GCWGC 3 cut(s) 252, 255, 676
Tsp45I GTSAC 5 cut(s) 306, 318, 490, 700, 1073
TspDTI ATGAA 4 cut(s) 104, 250, 271, 639
TspGWI ACGGA 4 cut(s) 306, 511, 900, 1049
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 3 cut(s) 146, 207, 718
XceI RCATGY 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 1093
XspI CTAG 2 cut(s) 455, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.