Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006600

Physical Location & Seq

Genomic Coordinates Reverse (-)

36226580 .. 36227365

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCACCATCTTATTCTCATTTCTTCCCAAGAGGCCTTTCTATATCTCAAATCCAAAGATTCATACCTAAAAGCTGGAAGGAAGGAACGAAACTATTTGGGAAATTATCTGCTTTATGTATTTCGGAAATAGGTTCAGCTGTTGATGATTCTATGATAGATTCTCTTCTTACATCCATCAAGAATTATGCAAGCCAAGGAAATTTATCAAAAGCATTCAAAACTATCTCTCTTGTCCAGCTCTATGCCTCTTCTCCTACTTGTGACCTTATCTTACATTCCATCTCTTCTGTTATCTTATCTTGTGCCAACCATAAAGCATTACTGCATGGTGAACAGCTTCATGCACATATTGTCAGATTGGGGTTTGAGCGACATCCCATTTTGGTTCCCAAGCTGGTTACATTTTACTCGAGCTTTAATCTCCATGCTGATGCTCGTATCATTATTGAGAATTCAAATATATTGCATCCTCTACCTTGGAATGTGCTTATCTCTTCATATGTTAAAAATGAACTTTTGGATGAGGCTCTCTCTACGTATAAACAAATGGTCAACAAGGGGATTAGGCCAGATTGTTTCACTTACCCATCTGTTCTCAAGGCTTGTGGTGAAAAATTGGATATAAGTTTTGGTAAGGATGTGCATAAGTCCATTGATGCTTGTTGTCAGGAGTGGAATTTATTTGTGCATAATTCATTGGTCTCCATGTATGGGAAATTTGGGCTTCTCGACGTTGCTCGCCACTTATTCGACAAAATGCCCACAAGGGATGCAATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

8.61

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	161 - 203	1.7e-11	PPR repeat family
PPR	PF01535	161 - 189	2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22830 AT1G22830 AT1G71490
fragaria_vesca	FvH4_5g32370
malus_domestica	MD04G1056500.v1.1 MD15G1404200.v1.1
prunus_persica	Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1
pyrus_communis	pycom04g04960 pycom15g36160
rosa_chinensis	RchiOBHm_Chr7g0228861
rosa_laevigata	RLG00000001540 RLG00000002151 RLG00000002152
rosa_multiflora	Rmu_co8395259.1_g000001 Rmu_sc0004517.1_g000002 Rmu_sc0011218.1_g000005 Rmu_sc0013945.1_g000009
rosa_rugosa	Rorug07G0252400 Rorug07G0252500
rosa_samantha	Rh7AG405700 Rh7BG385000 Rh7CG423300 Rh7DG399700
rosa_wichuraiana	Rw7G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	202, 454, 679, 719
AfiI	CCNNNNNNNGG	1 cut(s)	714
AgsI	TTSAA	2 cut(s)	220, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	6 cut(s)	75, 140, 241, 340, 397, 417
AluI	AGCT	6 cut(s)	75, 140, 241, 340, 397, 417
Alw26I	GTCTC	1 cut(s)	709
Ama87I	CYCGRG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	34, 569
ApoI	RAATTY	4 cut(s)	202, 454, 679, 719
Asp700I	GAANNNNTTC	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	344, 623
AvaI	CYCGRG	1 cut(s)	412
BccI	CCATC	4 cut(s)	16, 185, 290, 598
BcoDI	GTCTC	1 cut(s)	709
BmeT110I	CYCGRG	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	390
BmsI	GCATC	4 cut(s)	424, 478, 649, 763
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpuEI	CTTGAG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	196, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	196, 479
BseGI	GGATG	6 cut(s)	173, 376, 469, 529, 646, 778
BseLI	CCNNNNNNNGG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	36, 571
BsiHKCI	CYCGRG	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	36, 571
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	412
BspANI	GGCC	2 cut(s)	36, 571
BspLI	GGNNCC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	709
BssECI	CCNNGG	2 cut(s)	196, 479
BssT1I	CCWWGG	2 cut(s)	196, 479
Bst6I	CTCTTC	4 cut(s)	171, 256, 292, 502
BstBAI	YACGTR	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	193, 742
BstDEI	CTNAG	1 cut(s)	783
BstF5I	GGATG	6 cut(s)	173, 376, 469, 529, 646, 778
BstMAI	GTCTC	1 cut(s)	709
BstSNI	TACGTA	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	36, 571
BtsCI	GGATG	6 cut(s)	173, 376, 469, 529, 646, 778
Cac8I	GCNNGC	2 cut(s)	193, 742
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	4 cut(s)	329, 344, 428, 709
DdeI	CTNAG	1 cut(s)	783
Eam1104I	CTCTTC	4 cut(s)	171, 256, 292, 502
EarI	CTCTTC	4 cut(s)	171, 256, 292, 502
Eco105I	TACGTA	1 cut(s)	540
Eco130I	CCWWGG	2 cut(s)	196, 479
Eco147I	AGGCCT	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	412
EcoRI	GAATTC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	196, 479
ErhI	CCWWGG	2 cut(s)	196, 479
FaeI	CATG	4 cut(s)	332, 347, 431, 712
FatI	CATG	4 cut(s)	328, 343, 427, 708
FauNDI	CATATG	1 cut(s)	502
FokI	GGATG	5 cut(s)	160, 363, 456, 536, 653
HaeIII	GGCC	2 cut(s)	36, 571
Hin1II	CATG	4 cut(s)	332, 347, 431, 712
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	3 cut(s)	60, 149, 161
HphI	GGTGA	2 cut(s)	344, 623
Hpy166II	GTNNAC	2 cut(s)	335, 556
Hpy188I	TCNGA	2 cut(s)	127, 359
Hpy188III	TCNNGA	3 cut(s)	181, 671, 731
Hpy8I	GTNNAC	2 cut(s)	335, 556
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	2 cut(s)	73, 77
HpyCH4IV	ACGT	2 cut(s)	539, 735
HpyCH4V	TGCA	7 cut(s)	191, 328, 347, 469, 646, 691, 776
HpyF3I	CTNAG	1 cut(s)	783
HpySE526I	ACGT	2 cut(s)	539, 735
Hsp92II	CATG	4 cut(s)	332, 347, 431, 712
LpnPI	CCDG	5 cut(s)	61, 251, 383, 585, 656
LweI	GCATC	4 cut(s)	424, 478, 649, 763
MaeII	ACGT	2 cut(s)	539, 735
MaeIII	GTNAC	2 cut(s)	263, 400
MboII	GAAGA	5 cut(s)	16, 158, 243, 279, 489
MluCI	AATT	9 cut(s)	104, 184, 202, 454, 617, 679, 694, 719, 777
MnlI	CCTC	4 cut(s)	26, 259, 483, 520
MroXI	GAANNNNTTC	1 cut(s)	339
MseI	TTAA	2 cut(s)	420, 507
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	502
NlaIII	CATG	4 cut(s)	332, 347, 431, 712
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	263
PaeR7I	CTCGAG	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	36
PctI	GAATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	60, 149, 161
Ppu21I	YACGTR	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	390
PspXI	VCTCGAGB	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	420, 507
SfaNI	GCATC	4 cut(s)	424, 478, 649, 763
Sfr274I	CTCGAG	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	412, 599
SmoI	CTYRAG	2 cut(s)	412, 599
SnaBI	TACGTA	1 cut(s)	540
Sse9I	AATT	9 cut(s)	104, 184, 202, 454, 617, 679, 694, 719, 777
SseBI	AGGCCT	1 cut(s)	36
StuI	AGGCCT	1 cut(s)	36
StyI	CCWWGG	2 cut(s)	196, 479
TaiI	ACGT	2 cut(s)	542, 738
TaqI	TCGA	3 cut(s)	413, 732, 753
TasI	AATT	9 cut(s)	104, 184, 202, 454, 617, 679, 694, 719, 777
TfiI	GAWTC	3 cut(s)	60, 149, 161
Tru1I	TTAA	2 cut(s)	420, 507
Tru9I	TTAA	2 cut(s)	420, 507
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	5 cut(s)	52, 332, 489, 528, 687
XapI	RAATTY	4 cut(s)	202, 454, 679, 719
XhoI	CTCGAG	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.