Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006600

Physical Location & Seq

Genomic Coordinates Reverse (-)

26343434 .. 26344282

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002151

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATCGAGCGGAGGAAGCTTCATTCATATTTAGAGAGAGTTTATGTTCTGGAATTGAACCCAATTACGTTACAATTGCCAGCATCCTGCCTCTTTGTGCTCGGGTAGCACATCTTCAACATGGGAAGGAATTTCACTGCTACATTACAAAACGTGTTGTGTTTGATGATTATTTATTGCTGTGGAATGCTCTTGTGGACATGTATGCCAGATCAGGCAGGGTTATAGAAGCGAAAAGAGTATTTGATTCAATGAATAAGAAGGATGAGGTAACTTATACTTCCATGATTGCAGGATATGGAGTACAGGGTGAGGGAAAAACTGCATTGAAGTTATTTGAAGAGATGAATAGTTTAAACATCCAACCAGATCATGTAAGCATGGTTTCCATTTTATCAGCATGCAGCCATTCAGGACTTGTAATCCAAGGCCAAATTCTATTCGAAAGGATGGTTAGTATGTATAGTATAACTCCCGATTTGGAGCAGTATGCTTGCATGGTTGATCTCTATGGGAGGGCTGGTCTATTACATAATGCAAAAGATATTATCAAAAGGATGCCTTACAAGCCGACTTCTGCCATGTGGGCCACTCTGATTGGACCTTGTAGGATCCATGGAAATACAGAGATAGGGGAATGGGCAGCTGAGATGCTATTACAAATGAGACCTGAGAATTCTGGGTGCTATGTATTAATTGCTAACATGCATGCTGCTGCTGGTTGTTGGAACAAGCTAGCTAGAGTGAGGACTTTCATGAGGGACTTGGGTGTAAGGAAGGCTCCTGGCTGCGCTTGGGTTGTGATGGATTCTCCCTCTTTTTGGTGGGGGACACCACAAATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

283

Amino Acids

31.75

Weight (kDa)

7.06

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	62 - 88	8.6e-06	PPR repeat
PPR_2	PF13041	89 - 136	3.4e-11	PPR repeat family
PPR	PF01535	91 - 120	3.5e-07	PPR repeat
E_motif	PF20431	206 - 267	9.6e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22830 AT1G22830 AT1G71490
fragaria_vesca	FvH4_5g32370
malus_domestica	MD04G1056500.v1.1 MD15G1404200.v1.1
prunus_persica	Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1
pyrus_communis	pycom04g04960 pycom15g36160
rosa_chinensis	RchiOBHm_Chr7g0228861
rosa_laevigata	RLG00000001540 RLG00000002151 RLG00000002152
rosa_multiflora	Rmu_co8395259.1_g000001 Rmu_sc0004517.1_g000002 Rmu_sc0011218.1_g000005 Rmu_sc0013945.1_g000009
rosa_rugosa	Rorug07G0252400 Rorug07G0252500
rosa_samantha	Rh7AG405700 Rh7BG385000 Rh7CG423300 Rh7DG399700
rosa_wichuraiana	Rw7G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	3 cut(s)	12, 607, 620
AcsI	RAATTY	3 cut(s)	131, 435, 676
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	822
AflIII	ACRYGT	2 cut(s)	154, 201
AgsI	TTSAA	5 cut(s)	59, 119, 252, 331, 341
AjnI	CCWGG	1 cut(s)	784
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	5 cut(s)	20, 647, 736, 740, 846
AluI	AGCT	5 cut(s)	20, 647, 736, 740, 846
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	12, 607, 620
Ama87I	CYCGRG	1 cut(s)	102
AoxI	GGCC	2 cut(s)	430, 588
ApeKI	GCWGC	5 cut(s)	405, 644, 713, 716, 789
ApoI	RAATTY	3 cut(s)	131, 435, 676
AseI	ATTAAT	1 cut(s)	695
AspLEI	GCGC	1 cut(s)	794
AspS9I	GGNCC	2 cut(s)	588, 602
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	444
AsuNHI	GCTAGC	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	602
BamHI	GGATCC	1 cut(s)	612
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	417, 656, 700, 703, 776
BccI	CCATC	2 cut(s)	445, 799
BciT130I	CCWGG	1 cut(s)	786
BcoDI	GTCTC	1 cut(s)	661
BfaI	CTAG	2 cut(s)	737, 741
BglI	GCCNNNNNGGC	1 cut(s)	587
BisI	GCNGC	5 cut(s)	406, 645, 714, 717, 790
BlsI	GCNGC	5 cut(s)	407, 646, 715, 718, 791
Bme1390I	CCNGG	1 cut(s)	786
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	588, 602
BmiI	GGNNCC	2 cut(s)	614, 783
BmrFI	CCNGG	1 cut(s)	786
BmsI	GCATC	3 cut(s)	93, 549, 642
BmtI	GCTAGC	1 cut(s)	740
Bpu14I	TTCGAA	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	2 cut(s)	427, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	786
BseDI	CCNNGG	2 cut(s)	427, 616
BseGI	GGATG	5 cut(s)	84, 271, 360, 456, 564
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMII	CTCAG	2 cut(s)	639, 663
BseXI	GCAGC	5 cut(s)	417, 656, 700, 703, 776
BshFI	GGCC	2 cut(s)	432, 590
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	776, 844
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmAI	GTCTC	1 cut(s)	661
BsmFI	GGGAC	2 cut(s)	776, 844
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	432, 590
Bso31I	GGTCTC	1 cut(s)	661
BsoBI	CYCGRG	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	5 cut(s)	4, 212, 370, 505, 612
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	432, 590
BspCNI	CTCAG	2 cut(s)	640, 664
BspHI	TCATGA	1 cut(s)	756
BspLI	GGNNCC	2 cut(s)	614, 783
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	3 cut(s)	12, 607, 620
BspT104I	TTCGAA	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	427, 616
BssMI	GATC	5 cut(s)	4, 212, 370, 505, 612
BssT1I	CCWWGG	2 cut(s)	427, 616
Bst2UI	CCWGG	1 cut(s)	786
Bst6I	CTCTTC	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	5 cut(s)	82, 403, 496, 711, 738
BstDEI	CTNAG	2 cut(s)	648, 672
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	5 cut(s)	84, 271, 360, 456, 564
BstHHI	GCGC	1 cut(s)	794
BstKTI	GATC	5 cut(s)	7, 215, 373, 508, 615
BstMAI	GTCTC	1 cut(s)	661
BstMBI	GATC	5 cut(s)	4, 212, 370, 505, 612
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 107, 568, 587
BstNI	CCWGG	1 cut(s)	786
BstNSI	RCATGY	4 cut(s)	205, 405, 709, 713
BstSCI	CCNGG	1 cut(s)	784
BstV1I	GCAGC	5 cut(s)	417, 656, 700, 703, 776
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	432, 590
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	5 cut(s)	84, 271, 360, 456, 564
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	5 cut(s)	82, 403, 496, 711, 738
CciI	TCATGA	1 cut(s)	756
CfoI	GCGC	1 cut(s)	794
Cfr13I	GGNCC	2 cut(s)	588, 602
Csp6I	GTAC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	648, 672
DpnI	GATC	5 cut(s)	6, 214, 372, 507, 614
DpnII	GATC	5 cut(s)	4, 212, 370, 505, 612
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	2 cut(s)	427, 616
Eco31I	GGTCTC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	784
EcoT14I	CCWWGG	2 cut(s)	427, 616
EcoT22I	ATGCAT	1 cut(s)	711
ErhI	CCWWGG	2 cut(s)	427, 616
FalI	AAGNNNNNCTT	2 cut(s)	547, 579
FaqI	GGGAC	2 cut(s)	776, 844
Fnu4HI	GCNGC	5 cut(s)	406, 645, 714, 717, 790
FokI	GGATG	5 cut(s)	71, 278, 347, 463, 571
Fsp4HI	GCNGC	5 cut(s)	406, 645, 714, 717, 790
FspBI	CTAG	2 cut(s)	737, 741
GlaI	GCGC	1 cut(s)	793
GluI	GCNGC	5 cut(s)	406, 645, 714, 717, 790
HaeIII	GGCC	2 cut(s)	432, 590
HhaI	GCGC	1 cut(s)	794
Hin6I	GCGC	1 cut(s)	792
HinP1I	GCGC	1 cut(s)	792
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	248, 809
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	4 cut(s)	51, 414, 476, 757
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	121, 256, 772
HpyCH4IV	ACGT	2 cut(s)	69, 154
HpyCH4V	TGCA	6 cut(s)	293, 326, 405, 498, 539, 709
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 107, 568, 587
HpyF3I	CTNAG	2 cut(s)	648, 672
HpySE526I	ACGT	2 cut(s)	69, 154
HspAI	GCGC	1 cut(s)	792
Kzo9I	GATC	5 cut(s)	4, 212, 370, 505, 612
LmnI	GCTCC	2 cut(s)	484, 787
Lsp1109I	GCAGC	5 cut(s)	417, 656, 700, 703, 776
LweI	GCATC	3 cut(s)	93, 549, 642
MaeI	CTAG	2 cut(s)	737, 741
MaeII	ACGT	2 cut(s)	69, 154
MaeIII	GTNAC	2 cut(s)	70, 271
MalI	GATC	5 cut(s)	6, 214, 372, 507, 614
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	5 cut(s)	4, 212, 370, 505, 612
MboII	GAAGA	2 cut(s)	107, 353
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	7 cut(s)	54, 64, 75, 131, 435, 676, 696
MmeI	TCCRAC	2 cut(s)	388, 707
MnlI	CCTC	8 cut(s)	7, 102, 262, 307, 510, 741, 753, 826
Mph1103I	ATGCAT	1 cut(s)	711
MseI	TTAA	2 cut(s)	356, 695
MspA1I	CMGCKG	2 cut(s)	647, 846
MspR9I	CCNGG	1 cut(s)	786
MssI	GTTTAAAC	1 cut(s)	357
MunI	CAATTG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	786
MwoI	GCNNNNNNNGC	4 cut(s)	17, 107, 568, 587
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	5 cut(s)	4, 212, 370, 505, 612
NheI	GCTAGC	1 cut(s)	736
NlaIV	GGNNCC	2 cut(s)	614, 783
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	4 cut(s)	205, 405, 709, 713
NspV	TTCGAA	1 cut(s)	444
PaeI	GCATGC	2 cut(s)	405, 713
PagI	TCATGA	1 cut(s)	756
PciI	ACATGT	1 cut(s)	201
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	248, 809
PkrI	GCNGC	5 cut(s)	407, 646, 715, 718, 791
PmeI	GTTTAAAC	1 cut(s)	357
PscI	ACATGT	1 cut(s)	201
PshBI	ATTAAT	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	784
PspN4I	GGNNCC	2 cut(s)	614, 783
PspPI	GGNCC	2 cut(s)	588, 602
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	2 cut(s)	647, 846
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	356, 695
SatI	GCNGC	5 cut(s)	406, 645, 714, 717, 790
Sau3AI	GATC	5 cut(s)	4, 212, 370, 505, 612
Sau96I	GGNCC	2 cut(s)	588, 602
ScrFI	CCNGG	1 cut(s)	786
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	3 cut(s)	93, 549, 642
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	602
SphI	GCATGC	2 cut(s)	405, 713
Sse9I	AATT	7 cut(s)	54, 64, 75, 131, 435, 676, 696
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	737, 741
StyD4I	CCNGG	1 cut(s)	784
StyI	CCWWGG	2 cut(s)	427, 616
TaiI	ACGT	2 cut(s)	72, 157
TaqI	TCGA	2 cut(s)	7, 444
TasI	AATT	7 cut(s)	54, 64, 75, 131, 435, 676, 696
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	248, 809
Tru1I	TTAA	2 cut(s)	356, 695
Tru9I	TTAA	2 cut(s)	356, 695
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	5 cut(s)	405, 644, 713, 716, 789
TspDTI	ATGAA	5 cut(s)	12, 16, 269, 362, 745
TspRI	CASTG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	695
XapI	RAATTY	3 cut(s)	131, 435, 676
XceI	RCATGY	4 cut(s)	205, 405, 709, 713
XspI	CTAG	2 cut(s)	737, 741
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.