Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8395259.1

Orthogroup ID

OG0006600

Physical Location & Seq

Genomic Coordinates Forward (+)

40 .. 1241

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8395259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1196 bp

atgtatggaaagtttgggcttgtggatgttgctcgtcagttgtttgacataatgccccaaagggatataatttcttggaattcaatgatctcgtgttatgcctccaaaggtatgtggaatgaagcatttgagctgtttggaaaattgcagatggagggtactgaagtaagtattataacttggaataccatagctggaggttgcttgagaacaggaaatataaagggtgctctggagttgctttctcaaatgagagttggtggtattcaactggactcagtggcatttacggttgggcttagtgcttcttcccacattggatctattaagttagggaaggagatgcatggttctgcaattcgtacttgttgtgatgggtatgacaatgtcagaaatgcattaattacaatgtattccaggtgcaaagatctaagtcatgcctatactttgtttcaatcgatagaagataggagtatagtcacttggaactccatgatttctggttattcccacatggatcgagcagaggaagcttcattcatatttagagagatgttgtgttctggaattgaacccaattacgttacgattgccagcatcctgcctctttgtgcacgggtagcaaatcttcaacatggaaaggaatttcactgctacattacaaaacgtgttgtgtttgatgattatttattgctgtggaatgctcttgtggacatgtatgccagatcaggcagggttatagaagctaaaagagtatttgattcaatgaataagaaggatgaggttacttatacttccatgattgcaggatatggagtacagggtgagggaaaagctgcattgaagttatttgaagagatgaatagtttaaacatccaaccagatcatgtaaccatggtttccattttatcagcatgtagccattcaggacttgtaatccaaggccaaattctattcgaaaggatggtgagtatgtatggtataactcccgatttggagcactatgcttgcatggttgatctctatgggagggctggtctattacataatgcaaaagatattatcaaaaggatgccttacaagccaacttctgccatgtgggccactctgattggagcttgtaggatccatggaaatacagagataggggaatgggcagctgagatgctattacaaatgagacctgagaattctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

399

Amino Acids

44.57

Weight (kDa)

6.27

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22830 AT1G22830 AT1G71490
fragaria_vesca	FvH4_5g32370
malus_domestica	MD04G1056500.v1.1 MD15G1404200.v1.1
prunus_persica	Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1
pyrus_communis	pycom04g04960 pycom15g36160
rosa_chinensis	RchiOBHm_Chr7g0228861
rosa_laevigata	RLG00000001540 RLG00000002151 RLG00000002152
rosa_multiflora	Rmu_co8395259.1_g000001 Rmu_sc0004517.1_g000002 Rmu_sc0011218.1_g000005 Rmu_sc0013945.1_g000009
rosa_rugosa	Rorug07G0252400 Rorug07G0252500
rosa_samantha	Rh7AG405700 Rh7BG385000 Rh7CG423300 Rh7DG399700
rosa_wichuraiana	Rw7G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	176
AclWI	GGATC	4 cut(s)	328, 525, 1120, 1133
AcsI	RAATTY	4 cut(s)	79, 644, 948, 1189
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	160, 364, 819
AflIII	ACRYGT	2 cut(s)	667, 714
AgsI	TTSAA	8 cut(s)	84, 269, 455, 572, 632, 765, 844, 854
AjnI	CCWGG	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	933, 965
AluBI	AGCT	7 cut(s)	133, 194, 533, 746, 836, 1118, 1160
AluI	AGCT	7 cut(s)	133, 194, 533, 746, 836, 1118, 1160
Alw21I	GWGCWC	3 cut(s)	232, 616, 1002
Alw26I	GTCTC	1 cut(s)	1174
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	4 cut(s)	328, 525, 1120, 1133
AoxI	GGCC	2 cut(s)	943, 1101
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	836, 1157
ApoI	RAATTY	4 cut(s)	79, 644, 948, 1189
AseI	ATTAAT	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	1101
AsuHPI	GGTGA	2 cut(s)	836, 979
AsuII	TTCGAA	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BamHI	GGATCC	1 cut(s)	1125
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BauI	CACGAG	1 cut(s)	91
Bbv12I	GWGCWC	3 cut(s)	232, 616, 1002
BbvI	GCAGC	2 cut(s)	823, 1169
BccI	CCATC	3 cut(s)	145, 368, 958
BciT130I	CCWGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	1174
BglI	GCCNNNNNGGC	1 cut(s)	1100
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	837, 1158
BlsI	GCNGC	2 cut(s)	838, 1159
Bme1390I	CCNGG	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	1101
BmiI	GGNNCC	1 cut(s)	1127
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	4 cut(s)	333, 606, 1062, 1155
BpmI	CTGGAG	2 cut(s)	216, 254
Bpu14I	TTCGAA	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	1174
BsaJI	CCNNGG	3 cut(s)	894, 940, 1129
BsaXI	ACNNNNNCTCC	2 cut(s)	1021, 1051
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	3 cut(s)	894, 940, 1129
BseGI	GGATG	6 cut(s)	31, 597, 784, 873, 969, 1077
BseMII	CTCAG	3 cut(s)	291, 1152, 1176
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	823, 1169
BshFI	GGCC	2 cut(s)	945, 1103
BshVI	ATCGAT	1 cut(s)	458
BsiHKAI	GWGCWC	3 cut(s)	232, 616, 1002
BsmAI	GTCTC	1 cut(s)	1174
BsmI	GAATGC	1 cut(s)	706
BsnI	GGCC	2 cut(s)	945, 1103
Bso31I	GGTCTC	1 cut(s)	1174
Bsp119I	TTCGAA	1 cut(s)	957
Bsp1286I	GDGCHC	3 cut(s)	232, 616, 1002
Bsp143I	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
Bsp19I	CCATGG	2 cut(s)	894, 1129
BspANI	GGCC	2 cut(s)	945, 1103
BspCNI	CTCAG	3 cut(s)	290, 1153, 1177
BspDI	ATCGAT	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	1127
BspPI	GGATC	4 cut(s)	328, 525, 1120, 1133
BspT104I	TTCGAA	1 cut(s)	957
BspTNI	GGTCTC	1 cut(s)	1174
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	894, 940, 1129
BssMI	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	3 cut(s)	894, 940, 1129
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	849
BstBI	TTCGAA	1 cut(s)	957
BstC8I	GCNNGC	2 cut(s)	595, 1009
BstDEI	CTNAG	5 cut(s)	277, 299, 431, 1161, 1185
BstDSI	CCRYGG	2 cut(s)	894, 1129
BstF5I	GGATG	6 cut(s)	31, 597, 784, 873, 969, 1077
BstKTI	GATC	8 cut(s)	90, 323, 430, 520, 728, 886, 1021, 1128
BstMAI	GTCTC	1 cut(s)	1174
BstMBI	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	530, 620, 1081, 1100
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	2 cut(s)	718, 918
BstSCI	CCNGG	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	823, 1169
BstX2I	RGATCY	3 cut(s)	320, 427, 1125
BstYI	RGATCY	3 cut(s)	320, 427, 1125
Bsu15I	ATCGAT	1 cut(s)	458
BsuRI	GGCC	2 cut(s)	945, 1103
BsuTUI	ATCGAT	1 cut(s)	458
BtgI	CCRYGG	2 cut(s)	894, 1129
BtsCI	GGATG	6 cut(s)	31, 597, 784, 873, 969, 1077
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	285, 649
Cac8I	GCNNGC	2 cut(s)	595, 1009
Cfr13I	GGNCC	1 cut(s)	1101
ClaI	ATCGAT	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	159, 363, 818
CspCI	CAANNNNNGTGG	2 cut(s)	1093, 1128
CviQI	GTAC	3 cut(s)	159, 363, 818
DdeI	CTNAG	5 cut(s)	277, 299, 431, 1161, 1185
DpnI	GATC	8 cut(s)	89, 322, 429, 519, 727, 885, 1020, 1127
DpnII	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
DraI	TTTAAA	1 cut(s)	870
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	3 cut(s)	894, 940, 1129
Eco31I	GGTCTC	1 cut(s)	1174
Eco57I	CTGAAG	1 cut(s)	183
EcoRI	GAATTC	2 cut(s)	79, 1189
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	3 cut(s)	894, 940, 1129
EcoT22I	ATGCAT	2 cut(s)	348, 400
ErhI	CCWWGG	3 cut(s)	894, 940, 1129
FalI	AAGNNNNNCTT	2 cut(s)	1060, 1092
Fnu4HI	GCNGC	2 cut(s)	837, 1158
FokI	GGATG	6 cut(s)	38, 584, 791, 860, 976, 1084
Fsp4HI	GCNGC	2 cut(s)	837, 1158
GluI	GCNGC	2 cut(s)	837, 1158
GsuI	CTGGAG	2 cut(s)	216, 254
HaeIII	GGCC	2 cut(s)	945, 1103
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	275, 761
HphI	GGTGA	2 cut(s)	836, 979
Hpy166II	GTNNAC	2 cut(s)	614, 712
Hpy188I	TCNGA	2 cut(s)	392, 1110
Hpy188III	TCNNGA	4 cut(s)	233, 564, 927, 989
Hpy8I	GTNNAC	2 cut(s)	614, 712
HpyAV	CCTTC	2 cut(s)	331, 769
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	2 cut(s)	582, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	530, 620, 1081, 1100
HpyF3I	CTNAG	5 cut(s)	277, 299, 431, 1161, 1185
HpySE526I	ACGT	2 cut(s)	582, 667
Kzo9I	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
LmnI	GCTCC	2 cut(s)	997, 1115
Lsp1109I	GCAGC	2 cut(s)	823, 1169
LweI	GCATC	4 cut(s)	333, 606, 1062, 1155
MaeII	ACGT	2 cut(s)	582, 667
MaeIII	GTNAC	4 cut(s)	478, 583, 784, 889
MalI	GATC	8 cut(s)	89, 322, 429, 519, 727, 885, 1020, 1127
MboI	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
MboII	GAAGA	4 cut(s)	300, 476, 620, 866
MflI	RGATCY	3 cut(s)	320, 427, 1125
MhlI	GDGCHC	3 cut(s)	232, 616, 1002
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	901
MnlI	CCTC	8 cut(s)	112, 148, 191, 520, 615, 775, 820, 1023
Mph1103I	ATGCAT	2 cut(s)	348, 400
MseI	TTAA	3 cut(s)	327, 401, 869
MspA1I	CMGCKG	1 cut(s)	1160
MspR9I	CCNGG	1 cut(s)	418
MssI	GTTTAAAC	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	706
MvaI	CCWGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	4 cut(s)	530, 620, 1081, 1100
NcoI	CCATGG	2 cut(s)	894, 1129
NdeII	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
NlaIV	GGNNCC	1 cut(s)	1127
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	2 cut(s)	348, 400
NspI	RCATGY	2 cut(s)	718, 918
NspV	TTCGAA	1 cut(s)	957
PciI	ACATGT	1 cut(s)	714
PctI	GAATGC	1 cut(s)	706
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	838, 1159
PleI	GAGTC	1 cut(s)	269
PmeI	GTTTAAAC	1 cut(s)	870
PpsI	GAGTC	1 cut(s)	269
PscI	ACATGT	1 cut(s)	714
PshBI	ATTAAT	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	1127
PspPI	GGNCC	1 cut(s)	1101
PsuI	RGATCY	3 cut(s)	320, 427, 1125
PsyI	GACNNNGTC	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	1160
RsaI	GTAC	3 cut(s)	160, 364, 819
RsaNI	GTAC	3 cut(s)	159, 363, 818
SaqAI	TTAA	3 cut(s)	327, 401, 869
SatI	GCNGC	2 cut(s)	837, 1158
Sau3AI	GATC	8 cut(s)	87, 320, 427, 517, 725, 883, 1018, 1125
Sau96I	GGNCC	1 cut(s)	1101
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	3 cut(s)	232, 616, 1002
SfaNI	GCATC	4 cut(s)	333, 606, 1062, 1155
SfuI	TTCGAA	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	3 cut(s)	894, 940, 1129
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	2 cut(s)	585, 670
TaqI	TCGA	3 cut(s)	458, 520, 957
TatI	WGTACW	1 cut(s)	817
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	3 cut(s)	327, 401, 869
Tru9I	TTAA	3 cut(s)	327, 401, 869
TscAI	CASTG	2 cut(s)	285, 656
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	836, 1157
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	135, 525, 529, 782, 875
TspRI	CASTG	2 cut(s)	285, 656
Tth111I	GACNNNGTC	1 cut(s)	386
VneI	GTGCAC	1 cut(s)	612
VspI	ATTAAT	1 cut(s)	401
XapI	RAATTY	4 cut(s)	79, 644, 948, 1189
XceI	RCATGY	2 cut(s)	718, 918
Zsp2I	ATGCAT	2 cut(s)	348, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.