Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006600

Physical Location & Seq

Genomic Coordinates Reverse (-)

26344366 .. 26345541

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002152

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGCAGATTTGGGCAAAACCATGCGATCAGACATTCATACCTAAGACATGGAAAGAAGGTATCAAACAGCTCGAGAAACCATCATCTATTTTAGAGCCGAGAGATTCTCTTCTTGCATCCATTAAGACTTACGCACGTGAAAGGACATCTATCAGAAGCATTCAAAAGCCTGGTAAACAGCTTCACGCACACATTATCAGATTGGGTCTTGAACAACACCCCATTTTGGTCCCCAAACTTGTCACATTTTATTCGAGCTTTAATTCCCATGTTGATGCTCATATTGTTGTTGAGAATTCCAATATATTGCATCCCCTACCTTGGAATTTGCTCATCTCTTCATATGTTAAAAATGAACTTTTGGATGAGGCTCTCGCTACCTATGACCAAATGGTCAATAAGGGGATTAGACCGGATTGTTTTACTTATCCATCTGTTCTCAAGGCTTGTGGTGAGAAGTTTGGGAAGGAGGGGCATAAGTCCATTGATGCTAGTTGTCAGGAGTGGAATTTGTTTGTGCATAATTCATTGGTCTCCATGTATGGAAAGTTTGGGCTTGTGGATGTTGCTCGTCAGTTGTTTGACATAATGCCCCAAAGGGATATAATTTCTTGGAATTCAATGATCTCGTGTTATGCCTCCAAAGCTGGAGGTTGCTTGAGAACAGGAAATATAAAGGGTGCTCTGGAGTTGCTTTCTCAAATGAGATTTGGTGGTATTCAACTGGACTCGGTGGCATTGGCCGTTGGGCTTAGTGCTTCTTTCCCACATTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

262

Amino Acids

29.35

Weight (kDa)

8.82

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	109 - 151	3.9e-11	PPR repeat family
PPR	PF01535	109 - 137	1.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22830 AT1G22830 AT1G71490
fragaria_vesca	FvH4_5g32370
malus_domestica	MD04G1056500.v1.1 MD15G1404200.v1.1
prunus_persica	Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1
pyrus_communis	pycom04g04960 pycom15g36160
rosa_chinensis	RchiOBHm_Chr7g0228861
rosa_laevigata	RLG00000001540 RLG00000002151 RLG00000002152
rosa_multiflora	Rmu_co8395259.1_g000001 Rmu_sc0004517.1_g000002 Rmu_sc0011218.1_g000005 Rmu_sc0013945.1_g000009
rosa_rugosa	Rorug07G0252400 Rorug07G0252500
rosa_samantha	Rh7AG405700 Rh7BG385000 Rh7CG423300 Rh7DG399700
rosa_wichuraiana	Rw7G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	4 cut(s)	298, 328, 511, 619
AcvI	CACGTG	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	229, 324
AgsI	TTSAA	4 cut(s)	167, 215, 624, 725
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	5 cut(s)	73, 184, 261, 650, 780
AluI	AGCT	5 cut(s)	73, 184, 261, 650, 780
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	744
ApoI	RAATTY	4 cut(s)	298, 328, 511, 619
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	631
BbrPI	CACGTG	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	688
BccI	CCATC	2 cut(s)	91, 442
BceAI	ACGGC	1 cut(s)	731
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	4 cut(s)	128, 268, 322, 481
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	2 cut(s)	672, 710
BpuEI	CTTGAG	2 cut(s)	428, 682
BsaAI	YACGTR	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 324
Bse1I	ACTGG	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	4 cut(s)	119, 313, 373, 571
BseLI	CCNNNNNNNGG	2 cut(s)	229, 324
BseNI	ACTGG	1 cut(s)	732
BshFI	GGCC	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	229, 324
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	746
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	28, 627
BspANI	GGCC	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	2 cut(s)	28, 627
BssSI	CACGAG	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	174
Bst6I	CTCTTC	2 cut(s)	117, 346
BstBAI	YACGTR	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	45, 755
BstF5I	GGATG	4 cut(s)	119, 313, 373, 571
BstKTI	GATC	2 cut(s)	31, 630
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	2 cut(s)	28, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	647
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	746
BtsCI	GGATG	4 cut(s)	119, 313, 373, 571
Cfr13I	GGNCC	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	4 cut(s)	24, 51, 272, 541
DdeI	CTNAG	2 cut(s)	45, 755
DpnI	GATC	2 cut(s)	30, 629
DpnII	GATC	2 cut(s)	28, 627
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	117, 346
EarI	CTCTTC	2 cut(s)	117, 346
Eco130I	CCWWGG	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	74
EcoRI	GAATTC	2 cut(s)	298, 619
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	4 cut(s)	27, 54, 275, 544
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	4 cut(s)	23, 50, 271, 540
FauNDI	CATATG	1 cut(s)	346
FokI	GGATG	4 cut(s)	106, 300, 380, 578
FspBI	CTAG	1 cut(s)	495
GsuI	CTGGAG	2 cut(s)	672, 710
HaeIII	GGCC	1 cut(s)	746
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	4 cut(s)	27, 54, 275, 544
HinfI	GANTC	2 cut(s)	107, 731
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	33, 158, 203
Hpy188III	TCNNGA	4 cut(s)	76, 212, 503, 689
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	53, 463
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	7, 119, 313, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	647
HpyF3I	CTNAG	2 cut(s)	45, 755
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	4 cut(s)	27, 54, 275, 544
Kzo9I	GATC	2 cut(s)	28, 627
LmnI	GCTCC	1 cut(s)	777
LpnPI	CCDG	8 cut(s)	159, 186, 429, 488, 636, 654, 674, 713
LweI	GCATC	4 cut(s)	128, 268, 322, 481
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	30, 629
MboI	GATC	2 cut(s)	28, 627
MboII	GAAGA	2 cut(s)	104, 333
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	7 cut(s)	265, 298, 328, 511, 526, 609, 619
MlyI	GAGTC	1 cut(s)	725
MnlI	CCTC	4 cut(s)	364, 466, 647, 652
MseI	TTAA	4 cut(s)	126, 264, 351, 784
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	647
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	28, 627
NlaIII	CATG	4 cut(s)	27, 54, 275, 544
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	74
PctI	GAATGC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	725
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	725
Ppu21I	YACGTR	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	172
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	126, 264, 351, 784
Sau3AI	GATC	2 cut(s)	28, 627
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	4 cut(s)	128, 268, 322, 481
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	74, 443, 661
SmoI	CTYRAG	3 cut(s)	74, 443, 661
Sse9I	AATT	7 cut(s)	265, 298, 328, 511, 526, 609, 619
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	323
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	75, 257
TasI	AATT	7 cut(s)	265, 298, 328, 511, 526, 609, 619
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	4 cut(s)	126, 264, 351, 784
Tru9I	TTAA	4 cut(s)	126, 264, 351, 784
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	28, 333, 372, 519
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	4 cut(s)	298, 328, 511, 619
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.