Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006600

Physical Location & Seq

Genomic Coordinates Forward (+)

23327004 .. 23456806

Gene Structure 129803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAACTCAGAGGAGAACTTTTGGGTTGTGCTATTCCTTGTTAGTGGGGGTTTTCTTGGTATTATTCTCTGGCATTGGTTCTTCTGCAGTTTCAAATGAGGTAAAAAGGTGTGATCCACACTCTAATGATAGTGACTCAAGTATTAGTTGTAGCTCCAAGAACTATGTTTTGCAGTCTTACTATGAAAAATATGAAGACCTACTAGATTCAAATTTCCAAGATTTTATAGCACAAGAACTTCCTATTGGTTTGTGTGAGGTGCTGCCACATAATCTGAGTCTTGCTTTAAGACTCTCCATTTTGCATCGCAATCTGATAGGGAATGGTTCTCATCGTCATCTTACGTCGTCCTTTAGACTTAAGATTGAACAAGAATCCATACTTGAGCTTCCTTCTCACCACTGTGAGGTCATAGTCATTGAGAGACTGCCATCTGGGGTATTTGCCGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGTGTACGGCAATATAGCTGTCTTTGGAGATGCAAATTTGGAATTGCCTTCTTTTCTTTCCAATCGTTCTGCTGTAGAGGTTCACATGGATGTTGGTCATGATCTCTTGCTGGGTCCGAGTAAAGAGTCTACCATCAATTTAGAGCTTCCCCTACATGCACGATATCCACCTCTAGATGAAAGTGGCTATTGGGAAGTCAAATTTGGTACACCTGATTTCTTCATGCGTTGCAGTGTTGAGGGAAAGTCACATAATCAAAGCTGTTTATATAGGATACCAGATATTGATGGTTCTGATTCAACATTTGGTACAGTTGTCTGGAACATACCTTCTGGGATGAAGGCACATGCTCGAATTGTTTCCGTCTTCACTTTTATTGCTGCCTTAATTTCAGCCATCTTGATTGCTGTAACATCCATATTTTATTCAGACAACTCCAGCAAACATTCAAAGGAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

315

Amino Acids

35.07

Weight (kDa)

5.56

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-X	PF08320	109 - 300	1.1e-22	PIG-X / PBN1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22830 AT1G22830 AT1G71490
fragaria_vesca	FvH4_5g32370
malus_domestica	MD04G1056500.v1.1 MD15G1404200.v1.1
prunus_persica	Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1 Prupe.1G551000_v2.0.a1
pyrus_communis	pycom04g04960 pycom15g36160
rosa_chinensis	RchiOBHm_Chr7g0228861
rosa_laevigata	RLG00000001540 RLG00000002151 RLG00000002152
rosa_multiflora	Rmu_co8395259.1_g000001 Rmu_sc0004517.1_g000002 Rmu_sc0011218.1_g000005 Rmu_sc0013945.1_g000009
rosa_rugosa	Rorug07G0252400 Rorug07G0252500
rosa_samantha	Rh7AG405700 Rh7BG385000 Rh7CG423300 Rh7DG399700
rosa_wichuraiana	Rw7G033610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	614
AclWI	GGATC	2 cut(s)	110, 446
AcsI	RAATTY	3 cut(s)	214, 520, 686
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	3 cut(s)	491, 694, 796
AfiI	CCNNNNNNNGG	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	6 cut(s)	96, 213, 371, 467, 786, 936
AjuI	GAANNNNNNNTTGG	4 cut(s)	231, 263, 672, 704
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	6 cut(s)	156, 391, 463, 503, 631, 747
AluI	AGCT	6 cut(s)	156, 391, 463, 503, 631, 747
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	110, 446
ApeKI	GCWGC	2 cut(s)	265, 866
ApoI	RAATTY	3 cut(s)	214, 520, 686
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BbsI	GAAGAC	2 cut(s)	204, 844
BbvI	GCAGC	2 cut(s)	252, 853
BccI	CCATC	4 cut(s)	442, 626, 767, 890
BceAI	ACGGC	1 cut(s)	508
BciVI	GTATCC	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	2 cut(s)	206, 659
BfmI	CTRYAG	2 cut(s)	87, 558
BfrI	CTTAAG	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	2 cut(s)	266, 867
BlsI	GCNGC	2 cut(s)	267, 868
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	600
BmsI	GCATC	2 cut(s)	316, 505
BpiI	GAAGAC	2 cut(s)	204, 844
BpmI	CTGGAG	1 cut(s)	907
BpuEI	CTTGAG	2 cut(s)	124, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
BseGI	GGATG	3 cut(s)	580, 828, 899
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	23, 269
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	252, 853
BseYI	CCCAGC	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	115, 451, 586
BspCNI	CTCAG	2 cut(s)	22, 270
BspHI	TCATGA	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	110, 446
BspTI	CTTAAG	1 cut(s)	362
BssMI	GATC	3 cut(s)	115, 451, 586
Bst4CI	ACNGT	2 cut(s)	407, 799
BstAFI	CTTAAG	1 cut(s)	362
BstDEI	CTNAG	3 cut(s)	9, 278, 945
BstF5I	GGATG	3 cut(s)	580, 828, 899
BstKTI	GATC	3 cut(s)	118, 454, 589
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	115, 451, 586
BstNSI	RCATGY	2 cut(s)	644, 836
BstSFI	CTRYAG	2 cut(s)	87, 558
BstV1I	GCAGC	2 cut(s)	252, 853
BstV2I	GAAGAC	2 cut(s)	204, 844
BsuI	GTATCC	1 cut(s)	753
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	580, 828, 899
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	403, 724
CciI	TCATGA	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	490, 693, 795
CviAII	CATG	5 cut(s)	571, 584, 641, 709, 833
CviJI	RGCY	8 cut(s)	156, 391, 463, 503, 631, 672, 747, 881
CviKI_1	RGCY	8 cut(s)	156, 391, 463, 503, 631, 672, 747, 881
CviQI	GTAC	3 cut(s)	490, 693, 795
DdeI	CTNAG	3 cut(s)	9, 278, 945
DpnI	GATC	3 cut(s)	117, 453, 588
DpnII	GATC	3 cut(s)	115, 451, 586
Eco32I	GATATC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	650
FaeI	CATG	5 cut(s)	574, 587, 644, 712, 836
FatI	CATG	5 cut(s)	570, 583, 640, 708, 832
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	2 cut(s)	266, 867
FokI	GGATG	3 cut(s)	587, 835, 886
Fsp4HI	GCNGC	2 cut(s)	266, 867
FspBI	CTAG	2 cut(s)	206, 659
GluI	GCNGC	2 cut(s)	266, 867
GsaI	CCCAGC	1 cut(s)	599
GsuI	CTGGAG	1 cut(s)	907
Hin1II	CATG	5 cut(s)	574, 587, 644, 712, 836
HinfI	GANTC	8 cut(s)	137, 209, 280, 294, 377, 611, 782, 941
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	4 cut(s)	490, 568, 615, 695
Hpy188I	TCNGA	6 cut(s)	12, 279, 318, 603, 781, 916
Hpy188III	TCNNGA	4 cut(s)	584, 659, 805, 886
Hpy8I	GTNNAC	4 cut(s)	490, 568, 615, 695
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	5 cut(s)	405, 485, 543, 820, 825
HpyCH4III	ACNGT	2 cut(s)	407, 799
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	6 cut(s)	89, 175, 307, 518, 644, 717
HpyF3I	CTNAG	3 cut(s)	9, 278, 945
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	574, 587, 644, 712, 836
Kzo9I	GATC	3 cut(s)	115, 451, 586
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	8 cut(s)	57, 423, 581, 711, 777, 790, 804, 937
Lsp1109I	GCAGC	2 cut(s)	252, 853
LweI	GCATC	2 cut(s)	316, 505
MaeI	CTAG	2 cut(s)	206, 659
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	134, 732, 895
MalI	GATC	3 cut(s)	117, 453, 588
MboI	GATC	3 cut(s)	115, 451, 586
MboII	GAAGA	4 cut(s)	75, 209, 697, 844
MluCI	AATT	7 cut(s)	214, 520, 527, 622, 686, 840, 873
MlyI	GAGTC	4 cut(s)	131, 288, 289, 620
MnlI	CCTC	7 cut(s)	6, 94, 253, 403, 556, 666, 718
MroXI	GAANNNNTTC	1 cut(s)	844
MseI	TTAA	3 cut(s)	290, 363, 872
MslI	CAYNNNNRTG	3 cut(s)	126, 405, 573
MspCI	CTTAAG	1 cut(s)	362
NdeII	GATC	3 cut(s)	115, 451, 586
NlaIII	CATG	5 cut(s)	574, 587, 644, 712, 836
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	134, 732
NspI	RCATGY	2 cut(s)	644, 836
OliI	CACNNNNGTG	1 cut(s)	405
PagI	TCATGA	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	4 cut(s)	209, 377, 782, 941
PkrI	GCNGC	2 cut(s)	267, 868
PleI	GAGTC	4 cut(s)	131, 288, 288, 619
PpsI	GAGTC	4 cut(s)	131, 288, 288, 619
PspFI	CCCAGC	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	491, 694, 796
RsaNI	GTAC	3 cut(s)	490, 693, 795
RseI	CAYNNNNRTG	3 cut(s)	126, 405, 573
SaqAI	TTAA	3 cut(s)	290, 363, 872
SatI	GCNGC	2 cut(s)	266, 867
Sau3AI	GATC	3 cut(s)	115, 451, 586
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	4 cut(s)	131, 288, 289, 620
SfaNI	GCATC	2 cut(s)	316, 505
SfcI	CTRYAG	2 cut(s)	87, 558
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	3 cut(s)	126, 405, 573
SmlI	CTYRAG	3 cut(s)	139, 362, 386
SmoI	CTYRAG	3 cut(s)	139, 362, 386
Sse9I	AATT	7 cut(s)	214, 520, 527, 622, 686, 840, 873
SspMI	CTAG	2 cut(s)	206, 659
TaaI	ACNGT	2 cut(s)	407, 799
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	838
TasI	AATT	7 cut(s)	214, 520, 527, 622, 686, 840, 873
TfiI	GAWTC	4 cut(s)	209, 377, 782, 941
Tru1I	TTAA	3 cut(s)	290, 363, 872
Tru9I	TTAA	3 cut(s)	290, 363, 872
TscAI	CASTG	2 cut(s)	410, 724
TseFI	GTSAC	2 cut(s)	134, 732
TseI	GCWGC	2 cut(s)	265, 866
Tsp45I	GTSAC	2 cut(s)	134, 732
TspDTI	ATGAA	5 cut(s)	201, 210, 678, 697, 839
TspGWI	ACGGA	1 cut(s)	838
TspRI	CASTG	2 cut(s)	410, 724
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	3 cut(s)	214, 520, 686
XbaI	TCTAGA	1 cut(s)	658
XceI	RCATGY	2 cut(s)	644, 836
XmiI	GTMKAC	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	2 cut(s)	206, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.