Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008936

Physical Location & Seq

Genomic Coordinates Reverse (-)

38074383 .. 38079943

Gene Structure 5561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGACCGAGGGTCAGAGCCCCCCGATGAGCTGGAGAGACTCGTACAAGGGGATGTCCTCTGACAACATCAAGGGTTTGATTCTTGCTTTGTCTTCAAGTTTGTTTATCGGTGCTAGTTTCATTGTGAAGAAGAAGGGATTGAAAAAGGCTGGAGCTTCTGGCATCAGAGCAGGAGTTGGAGGATATTCTTACCTATATGAGCCACTTTGGTGGGTAGGCATGATAACGATGATTATTGGGGAAATTGCTAATTTTGCGGCTTATGCCTTTGCGCCAGCTATACTAGTAACTCCTCTTGGTGCTCTCAGCATAATTATCAGTGCTGTACTTGCACATATTATTTTACGTGAGAGGCTTCATATTTTTGGGGTTCTTGGTTGTGCTCTGTGTGTTGTGGGTTCTACAACAATTGTTTTACATGCTCCTCAAGAGCGTATGATTGAATCTGTTACAGAAGTTTGGGATCTTGCCATGGAACCAGGTTTTCTCTTGTATGCAGCTTTGGTCATAACTGCTGTGTTTATACTTATATTCCACTTTATCCCGCAATATGGCCAGACACACATAATGGTCTACATTGGAGTTTGTTCCCTTGTTGGCTCGTTATCGGTCATGAGTGTTAAAGCACTTGGAATTGCTTTGAAGTTGACATTATCGGGCATGAATCAACTAGTTTATCCCCAGACTTGGGTCTTCACTCTAGTTGTCATTTCTTGTGTGCTTACCCAAATGAATTATTTGAATAAGGCACTTGATACTTTCAACACAGCTGTGGTATCTCCTATATACTATGTTATGTTCACATCACTAACTATTCTGGCTAGCGTTATCATGTTTAAGGATTGGGACAGACAGAGTCCAACTCAGGTTGTGACAGAAATGTGTGGGTTTGTGACCATCCTTGGAGGAACTTTTCTTCTTCACAGAACAAAGGATATGGTTGATGGTTTGCCAACATCAATGTCCTCCGTGCGACTATCTAAGCATGCCGATGAAGATGGAATCGATGGTTCTGAAGGCATCCCTCTCAGATGGCAAGATAACTCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

352

Amino Acids

38.21

Weight (kDa)

6.65

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	22 - 314	4.2e-135	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34470 AT1G71900 AT1G71900 AT4G09640
fragaria_vesca	FvH4_5g28690 FvH4_5g28690 FvH4_5g28690
malus_domestica	MD08G1240300.v1.1 MD15G1432900.v1.1
prunus_persica	Prupe.1G576800_v2.0.a1
pyrus_communis	pycom08g20840 pycom15g38250
rosa_chinensis	RchiOBHm_Chr7g0220851
rosa_laevigata	RLG00000002198
rosa_multiflora	Rmu_ssc0000286.1_g000017
rosa_roxburghii	Rroxscaffold_3G00238990
rosa_rugosa	Rorug07G0197200 Rorug07G0197300
rosa_samantha	Rh7AG337900 Rh7BG328700 Rh7CG355900 Rh7DG336900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	2 cut(s)	260, 548
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	1038
AfaI	GTAC	2 cut(s)	47, 330
AfiI	CCNNNNNNNGG	3 cut(s)	554, 690, 691
AgsI	TTSAA	6 cut(s)	99, 145, 446, 646, 745, 766
AhdI	GACNNNNNGTC	1 cut(s)	12
AhlI	ACTAGT	2 cut(s)	286, 673
AjnI	CCWGG	1 cut(s)	481
AleI	CACNNNNGTG	2 cut(s)	211, 773
AluBI	AGCT	5 cut(s)	33, 158, 281, 503, 773
AluI	AGCT	5 cut(s)	33, 158, 281, 503, 773
Alw21I	GWGCWC	2 cut(s)	307, 388
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	474
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	277
AsuNHI	GCTAGC	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	558
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	87, 688
Bbv12I	GWGCWC	2 cut(s)	307, 388
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	5 cut(s)	908, 941, 995, 1004, 1029
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	33
BcuI	ACTAGT	2 cut(s)	286, 673
BfaI	CTAG	5 cut(s)	117, 287, 674, 704, 825
BisI	GCNGC	2 cut(s)	261, 501
BlsI	GCNGC	2 cut(s)	262, 502
Bme1390I	CCNGG	1 cut(s)	483
BmeRI	GACNNNNNGTC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	174, 1032
BmtI	GCTAGC	1 cut(s)	828
BoxI	GACNNNNGTC	1 cut(s)	692
BpiI	GAAGAC	2 cut(s)	87, 688
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
BpmI	CTGGAG	2 cut(s)	55, 174
BpuEI	CTTGAG	1 cut(s)	414
Bsa29I	ATCGAT	1 cut(s)	1008
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	3 cut(s)	9, 474, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	554, 690, 691
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	3 cut(s)	9, 474, 904
BseGI	GGATG	3 cut(s)	60, 900, 1023
BseLI	CCNNNNNNNGG	3 cut(s)	554, 690, 691
BseMII	CTCAG	3 cut(s)	322, 881, 1045
BseRI	GAGGAG	2 cut(s)	285, 417
BseXI	GCAGC	1 cut(s)	512
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	558
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	307, 388
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	3 cut(s)	554, 690, 691
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	3 cut(s)	23, 307, 388
Bsp143I	GATC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	260, 548
BspANI	GGCC	1 cut(s)	558
BspCNI	CTCAG	3 cut(s)	321, 880, 1044
BspDI	ATCGAT	1 cut(s)	1008
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	480
BspOI	GCTAGC	1 cut(s)	828
BspPI	GGATC	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	9, 474, 904
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	474, 904
Bst2UI	CCWGG	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	3 cut(s)	279, 826, 990
BstDEI	CTNAG	4 cut(s)	308, 867, 984, 1031
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	60, 900, 1023
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	466
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 266, 332
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	2 cut(s)	425, 992
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	512
BstV2I	GAAGAC	2 cut(s)	87, 688
BstX2I	RGATCY	1 cut(s)	466
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	1008
BsuRI	GGCC	1 cut(s)	558
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	60, 900, 1023
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	279, 826, 990
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	1008
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	46, 329
CviAII	CATG	7 cut(s)	223, 422, 475, 616, 664, 835, 989
CviQI	GTAC	2 cut(s)	46, 329
DdeI	CTNAG	4 cut(s)	308, 867, 984, 1031
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	556
Eam1105I	GACNNNNNGTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	474, 904
Eco24I	GRGCYC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	474, 904
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	474, 904
FaeI	CATG	7 cut(s)	226, 425, 478, 619, 667, 838, 992
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	7 cut(s)	222, 421, 474, 615, 663, 834, 988
FauI	CCCGC	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	2 cut(s)	261, 501
FokI	GGATG	3 cut(s)	67, 887, 1010
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	261, 501
FspBI	CTAG	5 cut(s)	117, 287, 674, 704, 825
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	261, 501
GsuI	CTGGAG	2 cut(s)	55, 174
HaeIII	GGCC	1 cut(s)	558
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	7 cut(s)	226, 425, 478, 619, 667, 838, 992
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	6 cut(s)	41, 82, 446, 667, 859, 1005
Hpy166II	GTNNAC	3 cut(s)	577, 651, 804
Hpy188I	TCNGA	5 cut(s)	18, 64, 170, 1018, 1034
Hpy188III	TCNNGA	2 cut(s)	431, 616
Hpy8I	GTNNAC	3 cut(s)	577, 651, 804
HpyAV	CCTTC	2 cut(s)	130, 1013
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	2 cut(s)	335, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 266, 332
HpyF3I	CTNAG	4 cut(s)	308, 867, 984, 1031
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	7 cut(s)	226, 425, 478, 619, 667, 838, 992
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	155, 430
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	2 cut(s)	174, 1032
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	5 cut(s)	117, 287, 674, 704, 825
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	4 cut(s)	289, 451, 874, 895
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	7 cut(s)	87, 142, 145, 688, 911, 914, 1010
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	3 cut(s)	23, 307, 388
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	6 cut(s)	246, 253, 315, 411, 636, 736
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	2 cut(s)	35, 868
MmeI	TCCRAC	2 cut(s)	160, 887
MnlI	CCTC	9 cut(s)	4, 70, 176, 306, 348, 438, 902, 979, 1038
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	2 cut(s)	624, 840
MslI	CAYNNNNRTG	3 cut(s)	211, 773, 993
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	257, 266, 332
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	1 cut(s)	466
NheI	GCTAGC	1 cut(s)	824
NlaIII	CATG	7 cut(s)	226, 425, 478, 619, 667, 838, 992
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	874, 895
NspI	RCATGY	2 cut(s)	425, 992
OliI	CACNNNNGTG	2 cut(s)	211, 773
PaeI	GCATGC	1 cut(s)	992
PagI	TCATGA	1 cut(s)	615
PfeI	GAWTC	4 cut(s)	82, 446, 667, 1005
PflFI	GACNNNGTC	1 cut(s)	858
PkrI	GCNGC	2 cut(s)	262, 502
PleI	GAGTC	2 cut(s)	35, 867
PpsI	GAGTC	2 cut(s)	35, 867
Ppu21I	YACGTR	1 cut(s)	350
PshAI	GACNNNNGTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	466
PsyI	GACNNNGTC	1 cut(s)	858
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	47, 330
RsaNI	GTAC	2 cut(s)	46, 329
RseI	CAYNNNNRTG	3 cut(s)	211, 773, 993
SaqAI	TTAA	2 cut(s)	624, 840
SatI	GCNGC	2 cut(s)	261, 501
Sau3AI	GATC	1 cut(s)	466
SchI	GAGTC	2 cut(s)	35, 868
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	3 cut(s)	23, 307, 388
SetI	ASST	9 cut(s)	35, 160, 198, 283, 352, 487, 505, 775, 873
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	174, 1032
SmiMI	CAYNNNNRTG	3 cut(s)	211, 773, 993
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SpeI	ACTAGT	2 cut(s)	286, 673
SphI	GCATGC	1 cut(s)	992
Sse9I	AATT	6 cut(s)	246, 253, 315, 411, 636, 736
SsiI	CCGC	2 cut(s)	260, 548
SspMI	CTAG	5 cut(s)	117, 287, 674, 704, 825
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	474, 904
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	1008
TaqII	GACCGA	2 cut(s)	23, 601
TasI	AATT	6 cut(s)	246, 253, 315, 411, 636, 736
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	82, 446, 667, 1005
Tru1I	TTAA	2 cut(s)	624, 840
Tru9I	TTAA	2 cut(s)	624, 840
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	874, 895
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	874, 895
TspDTI	ATGAA	5 cut(s)	112, 350, 680, 749, 1011
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	858
XceI	RCATGY	2 cut(s)	425, 992
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	5 cut(s)	117, 287, 674, 704, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.