pycom16g00470

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011940
Physical Location & Seq
Forward (+)
295581 .. 298184
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGGCCGACATGCCCAAGGAGCATTTCATAGCCTTCATCAAGGAGGACTATGACGTCACGTGTTGGGGTTGTGGATTACACCTTCTTCTTCCATCAAATGCTCCAATTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCAAAATGCGGGGAAACGTGAATGCAAGTACTTTTGGTTGAGACGCTTGCGGGATCGCTGCTTTGTCGGTATCCTGTTCATGTTTATGCTATTTGTGATATGTGGTGGAGTGTGGGCGGTATTCCCTGTTCTTTTCGGTATCAGCTATTTCCATGGAATTTTTCACTCCATCATTACCTTCATGTTATCTGTAGCCACTGTTTATACATTCAGTTCTGCTTCATTTGCATGTGCTGGAACACCTCCGTGCAGAGTGTGGGGAAGCTATCCAGCTGTGGGGAAAGGTGACCTCGATAATTATACCTTCTGTCACCAATGCTTAAAACCAAAGTCGCCTAGCACTCATCATTGCCGGTCCTGTGGAAAGTGTATATTGGACATGGATCATCACTGCCCATTTATTGGGAATTGTGTTGGTGCAGCTAACCACCGACACTTCATTGCCTTACTCATATCAGTTGTCACCAGTACGTTCTATATTTCTATCATGGCTATCTATGTGTGTTATCATATCTGGCCATCCATAACCTACGAAGCCGAGGACCACTTGCATGCCCTTGACAGTTATTCAGCTATAACAGCTATCCGTGAGATTATATATGGCTTGCTAAGATCTGCTGTCCTTTTATCCCCTAGAGGGCTTCTTCTGTTATATCTGTTTGTTTCAAGTGTTTCGTTGGAGATAGGGTTGAGCATACTTCTGTGGCAGCAGCTGAGTTTTATTTACGAGGGAAAGACCTATTTGAGTCATTTAAGTTCAGAGGGAACTGATGAAGTTGGAGAGAAGGATTGCCAAAACCTCGTGCGTTTCTTTGCATTCCCGTATCCCTTGTCAAGATATCTTCCCCTCTGCTCTCGCTCAAGATTTTTGCCAAGTTTGCAAAAGAAGACGCATAGACACAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

350

Amino Acids

39.59

Weight (kDa)

8.64

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 146 - 297 2.3e-28 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 542
AciI CCGC 3 cut(s) 149, 190, 257
AclWI GGATC 2 cut(s) 201, 531
AcoI YGGCCR 2 cut(s) 3, 656
AcsI RAATTY 1 cut(s) 297
AcvI CACGTG 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 170, 610
AfiI CCNNNNNNNGG 3 cut(s) 416, 542, 777
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 112, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 8 cut(s) 131, 285, 405, 413, 563, 713, 722, 853
AluI AGCT 8 cut(s) 131, 285, 405, 413, 563, 713, 722, 853
Alw26I GTCTC 1 cut(s) 175
AlwI GGATC 2 cut(s) 201, 531
AlwNI CAGNNNCTG 1 cut(s) 853
AoxI GGCC 2 cut(s) 3, 656
ApeKI GCWGC 4 cut(s) 198, 560, 847, 850
ApoI RAATTY 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 495, 682
AsuHPI GGTGA 3 cut(s) 437, 443, 595
AvaII GGWCC 2 cut(s) 495, 682
BalI TGGCCA 1 cut(s) 658
BauI CACGAG 1 cut(s) 941
BbrPI CACGTG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 1034
BbvI GCAGC 4 cut(s) 185, 572, 859, 862
BccI CCATC 3 cut(s) 100, 317, 667
BciVI GTATCC 2 cut(s) 221, 975
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 2 cut(s) 477, 774
BfmI CTRYAG 1 cut(s) 330
BfuI GTATCC 2 cut(s) 221, 975
BglII AGATCT 1 cut(s) 752
BisI GCNGC 4 cut(s) 199, 561, 848, 851
BlsI GCNGC 4 cut(s) 200, 562, 849, 852
BmcAI AGTACT 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 495, 682
BmgT120I GGNCC 2 cut(s) 495, 682
BpiI GAAGAC 1 cut(s) 1034
BpuEI CTTGAG 1 cut(s) 985
BsaAI YACGTR 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 15, 292, 678
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 542, 777
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 487, 579
BseDI CCNNGG 3 cut(s) 15, 292, 678
BseGI GGATG 1 cut(s) 659
BseLI CCNNNNNNNGG 3 cut(s) 416, 542, 777
BseMI GCAATG 2 cut(s) 487, 579
BseMII CTCAG 1 cut(s) 845
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 4 cut(s) 185, 572, 859, 862
BsgI GTGCAG 2 cut(s) 409, 579
BshFI GGCC 2 cut(s) 5, 658
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 416, 542, 777
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmI GAATGC 2 cut(s) 167, 956
BsnI GGCC 2 cut(s) 5, 658
Bsp143I GATC 3 cut(s) 193, 523, 752
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 3 cut(s) 149, 190, 257
BspANI GGCC 2 cut(s) 5, 658
BspCNI CTCAG 1 cut(s) 846
BspPI GGATC 2 cut(s) 201, 531
BsrDI GCAATG 2 cut(s) 487, 579
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 3 cut(s) 15, 292, 678
BssMI GATC 3 cut(s) 193, 523, 752
BssNI GRCGYC 1 cut(s) 54
BssSI CACGAG 1 cut(s) 941
BssT1I CCWWGG 2 cut(s) 15, 292
Bst2BI CACGAG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 340, 704
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 188, 693, 746
BstDEI CTNAG 2 cut(s) 749, 854
BstDSI CCRYGG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 425
BstF5I GGATG 1 cut(s) 659
BstKTI GATC 3 cut(s) 196, 526, 755
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 193, 523, 752
BstMWI GCNNNNNNNGC 4 cut(s) 19, 365, 719, 1018
BstNSI RCATGY 3 cut(s) 13, 372, 695
BstPI GGTNACC 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 185, 572, 859, 862
BstV2I GAAGAC 1 cut(s) 1034
BstX2I RGATCY 1 cut(s) 752
BstYI RGATCY 1 cut(s) 752
BsuI GTATCC 2 cut(s) 221, 975
BsuRI GGCC 2 cut(s) 5, 658
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 659
BtsI GCAGTG 1 cut(s) 529
BtsIMutI CAGTG 2 cut(s) 336, 529
Cac8I GCNNGC 3 cut(s) 188, 693, 746
CaiI CAGNNNCTG 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 495, 682
CseI GACGC 2 cut(s) 192, 1039
Csp6I GTAC 2 cut(s) 169, 609
CviAII CATG 8 cut(s) 10, 220, 293, 322, 369, 520, 628, 692
CviQI GTAC 2 cut(s) 169, 609
DdeI CTNAG 2 cut(s) 749, 854
DpnI GATC 3 cut(s) 195, 525, 754
DpnII GATC 3 cut(s) 193, 523, 752
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 2 cut(s) 3, 656
Eco130I CCWWGG 2 cut(s) 15, 292
Eco32I GATATC 1 cut(s) 980
Eco47I GGWCC 2 cut(s) 495, 682
Eco72I CACGTG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 980
EcoT14I CCWWGG 2 cut(s) 15, 292
ErhI CCWWGG 2 cut(s) 15, 292
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 8 cut(s) 13, 223, 296, 325, 372, 523, 631, 695
FatI CATG 8 cut(s) 9, 219, 292, 321, 368, 519, 627, 691
FauI CCCGC 2 cut(s) 142, 183
Fnu4HI GCNGC 4 cut(s) 199, 561, 848, 851
FokI GGATG 1 cut(s) 646
Fsp4HI GCNGC 4 cut(s) 199, 561, 848, 851
FspBI CTAG 2 cut(s) 477, 774
GluI GCNGC 4 cut(s) 199, 561, 848, 851
HaeIII GGCC 2 cut(s) 5, 658
HapII CCGG 1 cut(s) 493
HgaI GACGC 2 cut(s) 192, 1039
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 8 cut(s) 13, 223, 296, 325, 372, 523, 631, 695
HinfI GANTC 1 cut(s) 886
HpaII CCGG 1 cut(s) 493
HphI GGTGA 3 cut(s) 437, 443, 595
Hpy188I TCNGA 1 cut(s) 901
Hpy188III TCNNGA 2 cut(s) 975, 1002
HpyAV CCTTC 5 cut(s) 43, 92, 328, 454, 919
HpyCH4III ACNGT 2 cut(s) 340, 704
HpyCH4IV ACGT 4 cut(s) 54, 59, 157, 611
HpyCH4V TGCA 7 cut(s) 165, 368, 390, 560, 691, 956, 1021
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 365, 719, 1018
HpyF3I CTNAG 2 cut(s) 749, 854
HpySE526I ACGT 4 cut(s) 54, 59, 157, 611
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 8 cut(s) 13, 223, 296, 325, 372, 523, 631, 695
Kzo9I GATC 3 cut(s) 193, 523, 752
LmnI GCTCC 3 cut(s) 19, 106, 128
LpnPI CCDG 8 cut(s) 227, 279, 360, 423, 506, 511, 619, 640
Lsp1109I GCAGC 4 cut(s) 185, 572, 859, 862
MaeI CTAG 2 cut(s) 477, 774
MaeII ACGT 4 cut(s) 54, 59, 157, 611
MaeIII GTNAC 4 cut(s) 55, 425, 449, 601
MalI GATC 3 cut(s) 195, 525, 754
MboI GATC 3 cut(s) 193, 523, 752
MboII GAAGA 5 cut(s) 77, 80, 776, 974, 1039
MflI RGATCY 1 cut(s) 752
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 4 cut(s) 105, 297, 436, 547
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 1 cut(s) 895
MmeI TCCRAC 2 cut(s) 798, 898
MnlI CCTC 9 cut(s) 37, 393, 440, 673, 770, 862, 895, 950, 998
Mox20I TGGCCA 1 cut(s) 658
MscI TGGCCA 1 cut(s) 658
MseI TTAA 3 cut(s) 134, 461, 893
MslI CAYNNNNRTG 4 cut(s) 224, 367, 385, 690
Msp20I TGGCCA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 413, 853
MspI CCGG 1 cut(s) 493
Mva1269I GAATGC 2 cut(s) 167, 956
MwoI GCNNNNNNNGC 4 cut(s) 19, 365, 719, 1018
NcoI CCATGG 1 cut(s) 292
NdeII GATC 3 cut(s) 193, 523, 752
NlaIII CATG 8 cut(s) 13, 223, 296, 325, 372, 523, 631, 695
NmeAIII GCCGAG 1 cut(s) 703
NmuCI GTSAC 4 cut(s) 55, 425, 449, 601
NspI RCATGY 3 cut(s) 13, 372, 695
OliI CACNNNNGTG 1 cut(s) 385
PaeI GCATGC 1 cut(s) 695
PctI GAATGC 2 cut(s) 167, 956
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 4 cut(s) 200, 562, 849, 852
PleI GAGTC 1 cut(s) 894
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
PpsI GAGTC 1 cut(s) 894
Ppu21I YACGTR 1 cut(s) 60
PspCI CACGTG 1 cut(s) 60
PspEI GGTNACC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 495, 682
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PstNI CAGNNNCTG 1 cut(s) 853
PsuI RGATCY 1 cut(s) 752
PvuII CAGCTG 2 cut(s) 413, 853
RsaI GTAC 2 cut(s) 170, 610
RsaNI GTAC 2 cut(s) 169, 609
RseI CAYNNNNRTG 4 cut(s) 224, 367, 385, 690
SaqAI TTAA 3 cut(s) 134, 461, 893
SatI GCNGC 4 cut(s) 199, 561, 848, 851
Sau3AI GATC 3 cut(s) 193, 523, 752
Sau96I GGNCC 2 cut(s) 495, 682
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 1 cut(s) 895
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 2 cut(s) 495, 682
SmiMI CAYNNNNRTG 4 cut(s) 224, 367, 385, 690
SmlI CTYRAG 1 cut(s) 1000
SmoI CTYRAG 1 cut(s) 1000
SphI GCATGC 1 cut(s) 695
Sse9I AATT 4 cut(s) 105, 297, 436, 547
SsiI CCGC 3 cut(s) 149, 190, 257
SspMI CTAG 2 cut(s) 477, 774
StyI CCWWGG 2 cut(s) 15, 292
TaaI ACNGT 2 cut(s) 340, 704
TaiI ACGT 4 cut(s) 57, 62, 160, 614
TaqI TCGA 1 cut(s) 432
TasI AATT 4 cut(s) 105, 297, 436, 547
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 3 cut(s) 134, 461, 893
Tru9I TTAA 3 cut(s) 134, 461, 893
TscAI CASTG 2 cut(s) 343, 536
TseFI GTSAC 4 cut(s) 55, 425, 449, 601
TseI GCWGC 4 cut(s) 198, 560, 847, 850
Tsp45I GTSAC 4 cut(s) 55, 425, 449, 601
TspDTI ATGAA 7 cut(s) 16, 25, 208, 310, 351, 568, 927
TspGWI ACGGA 2 cut(s) 375, 716
TspRI CASTG 2 cut(s) 343, 536
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 495, 682
XapI RAATTY 1 cut(s) 297
XceI RCATGY 3 cut(s) 13, 372, 695
XspI CTAG 2 cut(s) 477, 774
ZraI GACGTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.