Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

317898 .. 320435

Gene Structure 2538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAATATCCCACCTGCTGTTGCACAAGAAACTGGTAATGCTTTATTGTCCTCAACTAGCACTCATTCTGGTTCCTTGCCTGCTCCTACTTCTTCAAATTCCACAATGAATATTTCATCAACTCCTAATGCGGGACCAAAAACTTTATGGGTTTCCACTGCCCCATCTTTTAACATGACTCCTGGAATGCCTGGAACTCCCAGGACACCTGGACCCCCTGGAATAGCTCACTCAGTGCAAATATCTTTTAATCCGACTGCACCATCTGCACCTATTGATTCTTCTGTAGCCAATAGACCTAGCATGCAAGCAGTACCTGTCGCGTCATCAGCAGTTCAGCCACATGTGGGTGCTCCTTACCCATCTTTATCTGCTATGGGTGCTCCCTGGCTCTCGTCCCCACAGATAGGAGGCTTAGCTAGGCCTCCGTTTTTGCCATATCCTGCTGCCTTTCCTGGTCCCTTTCCTCTGCCTGCACATGTTATGCCTCTCGCTTCTGTTCCTTTACCTGATTCTCAGCCTCCTGGTGTCACTCCTGTGGGAAATACTGCGGCAAATTCTGTGTCTTCCATTGGTTCTGGTCATCAATCGGCAGGGTCTTCAGTGATGCAGAAAGAATTACCTCATCCTGGCGTTGGTCCCGAGAATAGAGCTGCTATCAATGAACAATTGGTTGCCTGGACTGCCCACAAGACAGAGACAGGAGTTGTATACTATTATAATGCTTTGACCGGTGAATCAACTTATGATAAGCCTCCTGGATTTAAGGAGGAGCCTGATAAGGTTTCTATGCAGCCAACTCCAGTTTCGACGGTGAATTTGGCTGGAACTGATTGGGTATTGGTCACAACCAGTGATGGGAAAAAGTTTTACCATAATAGCAAAACCAAGGTAAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

301

Amino Acids

30.88

Weight (kDa)

8.0

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	227 - 252	3.3e-08	WW domain
WW_TCERG1	PF23517	266 - 299	2.6e-06	TCERG1 WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	131, 551
AcsI	RAATTY	3 cut(s)	97, 556, 817
AcuI	CTGAAG	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	6 cut(s)	131, 347, 407, 629, 635, 858
AflIII	ACRYGT	2 cut(s)	343, 478
AgeI	ACCGGT	1 cut(s)	731
AgsI	TTSAA	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	790, 822
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	3 cut(s)	227, 419, 653
AluI	AGCT	3 cut(s)	227, 419, 653
Alw21I	GWGCWC	2 cut(s)	355, 385
Alw26I	GTCTC	1 cut(s)	692
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	1 cut(s)	422
ApeKI	GCWGC	3 cut(s)	446, 653, 793
ApoI	RAATTY	3 cut(s)	97, 556, 817
ArsI	GACNNNNNNTTYG	4 cut(s)	548, 580, 802, 834
AsiGI	ACCGGT	1 cut(s)	731
AspS9I	GGNCC	4 cut(s)	134, 212, 458, 638
AsuHPI	GGTGA	2 cut(s)	746, 826
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	4 cut(s)	134, 212, 458, 638
BbsI	GAAGAC	2 cut(s)	558, 591
Bbv12I	GWGCWC	2 cut(s)	355, 385
BbvI	GCAGC	3 cut(s)	433, 640, 805
BccI	CCATC	4 cut(s)	172, 271, 370, 851
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	3 cut(s)	57, 300, 420
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	4 cut(s)	447, 552, 654, 794
BlpI	GCTNAGC	1 cut(s)	415
BlsI	GCNGC	4 cut(s)	448, 553, 655, 795
Bme18I	GGWCC	4 cut(s)	134, 212, 458, 638
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	4 cut(s)	134, 212, 458, 638
BmiI	GGNNCC	6 cut(s)	73, 135, 214, 460, 640, 774
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	2 cut(s)	558, 591
BpmI	CTGGAG	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	415
BsaJI	CCNNGG	4 cut(s)	200, 217, 386, 888
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 347, 407, 629, 635, 858
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	37, 803, 852
BseDI	CCNNGG	4 cut(s)	200, 217, 386, 888
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	6 cut(s)	131, 347, 407, 629, 635, 858
BseMII	CTCAG	2 cut(s)	246, 530
BseNI	ACTGG	3 cut(s)	37, 803, 852
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	3 cut(s)	433, 640, 805
BsgI	GTGCAG	3 cut(s)	243, 252, 459
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	424
BshTI	ACCGGT	1 cut(s)	731
BsiHKAI	GWGCWC	2 cut(s)	355, 385
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	732
BslFI	GGGAC	4 cut(s)	147, 382, 444, 624
BslI	CCNNNNNNNGG	6 cut(s)	131, 347, 407, 629, 635, 858
BsmAI	GTCTC	1 cut(s)	692
BsmFI	GGGAC	4 cut(s)	147, 382, 444, 624
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	424
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	355, 385
Bsp1720I	GCTNAGC	1 cut(s)	415
BspACI	CCGC	2 cut(s)	131, 551
BspANI	GGCC	1 cut(s)	424
BspCNI	CTCAG	2 cut(s)	245, 529
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	6 cut(s)	73, 135, 214, 460, 640, 774
BspMI	ACCTGC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	37, 803, 852
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	4 cut(s)	200, 217, 386, 888
BssNAI	GTATAC	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	888
Bst1107I	GTATAC	1 cut(s)	712
Bst4CI	ACNGT	1 cut(s)	814
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	81, 305, 309, 474
BstDEI	CTNAG	3 cut(s)	232, 415, 516
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	692
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 329, 380, 683
BstNSI	RCATGY	3 cut(s)	307, 347, 482
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	433, 640, 805
BstV2I	GAAGAC	2 cut(s)	558, 591
BstZ17I	GTATAC	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	4 cut(s)	156, 240, 609, 859
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	81, 305, 309, 474
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	4 cut(s)	134, 212, 458, 638
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	314
CspAI	ACCGGT	1 cut(s)	731
CviAII	CATG	4 cut(s)	175, 304, 344, 479
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	232, 415, 516
DraIII	CACNNNGTG	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	424
Eco47I	GGWCC	4 cut(s)	134, 212, 458, 638
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	4 cut(s)	178, 307, 347, 482
FaqI	GGGAC	4 cut(s)	147, 382, 444, 624
FatI	CATG	4 cut(s)	174, 303, 343, 478
FauI	CCCGC	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	4 cut(s)	447, 552, 654, 794
FokI	GGATG	1 cut(s)	612
Fsp4HI	GCNGC	4 cut(s)	447, 552, 654, 794
FspBI	CTAG	3 cut(s)	57, 300, 420
GluI	GCNGC	4 cut(s)	447, 552, 654, 794
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	1 cut(s)	424
HapII	CCGG	1 cut(s)	732
HgaI	GACGC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	178, 307, 347, 482
HinfI	GANTC	4 cut(s)	178, 278, 512, 737
HpaII	CCGG	1 cut(s)	732
HphI	GGTGA	2 cut(s)	746, 826
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	814
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4V	TGCA	8 cut(s)	23, 238, 260, 269, 307, 476, 610, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 329, 380, 683
HpyF3I	CTNAG	3 cut(s)	232, 415, 516
Hsp92II	CATG	4 cut(s)	178, 307, 347, 482
LmnI	GCTCC	4 cut(s)	88, 358, 388, 772
Lsp1109I	GCAGC	3 cut(s)	433, 640, 805
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	3 cut(s)	57, 300, 420
MaeIII	GTNAC	2 cut(s)	529, 844
MboII	GAAGA	4 cut(s)	84, 273, 558, 591
MfeI	CAATTG	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	355, 385
MluCI	AATT	5 cut(s)	97, 556, 617, 668, 817
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	9 cut(s)	61, 404, 435, 477, 498, 531, 633, 763, 765
MseI	TTAA	3 cut(s)	171, 249, 765
MslI	CAYNNNNRTG	2 cut(s)	348, 536
MspI	CCGG	1 cut(s)	732
MunI	CAATTG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	266, 329, 380, 683
NlaIII	CATG	4 cut(s)	178, 307, 347, 482
NlaIV	GGNNCC	6 cut(s)	73, 135, 214, 460, 640, 774
NmuCI	GTSAC	2 cut(s)	529, 844
NspI	RCATGY	3 cut(s)	307, 347, 482
OliI	CACNNNNGTG	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	424
PciI	ACATGT	2 cut(s)	343, 478
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	278, 512, 737
PfoI	TCCNGGA	2 cut(s)	181, 757
PinAI	ACCGGT	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	448, 553, 655, 795
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PscI	ACATGT	2 cut(s)	343, 478
PsiI	TTATAA	1 cut(s)	720
PspN4I	GGNNCC	6 cut(s)	73, 135, 214, 460, 640, 774
PspPI	GGNCC	4 cut(s)	134, 212, 458, 638
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	2 cut(s)	348, 536
SaqAI	TTAA	3 cut(s)	171, 249, 765
SatI	GCNGC	4 cut(s)	447, 552, 654, 794
Sau96I	GGNCC	4 cut(s)	134, 212, 458, 638
SchI	GAGTC	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	355, 385
SfaNI	GCATC	1 cut(s)	597
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	4 cut(s)	134, 212, 458, 638
SmiMI	CAYNNNNRTG	2 cut(s)	348, 536
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	5 cut(s)	97, 556, 617, 668, 817
SseBI	AGGCCT	1 cut(s)	424
SsiI	CCGC	2 cut(s)	131, 551
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	3 cut(s)	57, 300, 420
StuI	AGGCCT	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	809
TasI	AATT	5 cut(s)	97, 556, 617, 668, 817
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	3 cut(s)	278, 512, 737
Tru1I	TTAA	3 cut(s)	171, 249, 765
Tru9I	TTAA	3 cut(s)	171, 249, 765
TscAI	CASTG	4 cut(s)	163, 240, 609, 859
TseFI	GTSAC	2 cut(s)	529, 844
TseI	GCWGC	3 cut(s)	446, 653, 793
Tsp45I	GTSAC	2 cut(s)	529, 844
TspDTI	ATGAA	4 cut(s)	17, 105, 122, 678
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	4 cut(s)	163, 240, 609, 859
VpaK11BI	GGWCC	4 cut(s)	134, 212, 458, 638
XapI	RAATTY	3 cut(s)	97, 556, 817
XceI	RCATGY	3 cut(s)	307, 347, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	3 cut(s)	57, 300, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.