Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

320526 .. 322037

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATTGAAAAAGGATCTGCTCCAGTTAGTATGAGTGCTCCGGCCATTAACGCGGGTGGTCGTGAAGCCATGCCTTTTAAACCTTCAGCTGTGCAGGGAACATCTTCTGCACTTGATCTGATTAAAAGAAAGTTGCAGGATCCTGTTACTTCTTCACCAATTCCGGCACCATCAGAATCAAATGGTGCAAGAGGAGTTGAGAGTACACCTAAGGGCCAACAAAGCGAGAATAGCAAAGATAAGCTAAAAGAAACTAATGGAGATGGAAACTTGTCTGATTCCTCATCAGATTCAGAGGATGCAGACAGTGGGCCAACAAAGGAGGAGTGCATTATTCAATTCAAGGAGATGCTTAAAGAACGGGGAGTGGCACCATTCTCGAAGTGGGAGAAGGAACTGCCAAAGATAGTGTTTGATCCACGATTTAAGGCCATTCCAAGTCATGAAGCTCGTAGGTCCTTGTTTGAGCACTATGTTAAAACACGCGCAGAGGAGGAGAGAAAGGAAAAAAGAGCAGCTCAGAAGGCTGCAATAGAGGGATTTAAGCAGTTATTGGATGAAGCATCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

191

Amino Acids

20.73

Weight (kDa)

5.89

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FF	PF01846	113 - 158	6.3e-15	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	166, 370
AccII	CGCG	2 cut(s)	53, 486
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	4 cut(s)	22, 134, 147, 410
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	8, 338, 343
AluBI	AGCT	4 cut(s)	89, 244, 449, 518
AluI	AGCT	4 cut(s)	89, 244, 449, 518
Alw21I	GWGCWC	2 cut(s)	40, 471
AlwI	GGATC	4 cut(s)	22, 134, 147, 410
AoxI	GGCC	4 cut(s)	42, 214, 311, 429
ApeKI	GCWGC	2 cut(s)	515, 527
Asp700I	GAANNNNTTC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	214, 311, 456
AsuHPI	GGTGA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	456
AxyI	CCTNAGG	1 cut(s)	210
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	166, 370
Bbv12I	GWGCWC	2 cut(s)	40, 471
BbvI	GCAGC	2 cut(s)	514, 527
BccI	CCATC	2 cut(s)	178, 257
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BisI	GCNGC	2 cut(s)	516, 528
BlsI	GCNGC	2 cut(s)	517, 529
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	214, 311, 456
BmiI	GGNNCC	3 cut(s)	141, 168, 372
BmsI	GCATC	2 cut(s)	289, 339
BpmI	CTGGAG	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	304, 562
BseMII	CTCAG	2 cut(s)	533, 558
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	4 cut(s)	207, 338, 506, 509
BseXI	GCAGC	2 cut(s)	514, 527
BsgI	GTGCAG	2 cut(s)	93, 113
Bsh1236I	CGCG	2 cut(s)	53, 486
BshFI	GGCC	4 cut(s)	44, 216, 313, 431
BshNI	GGYRCC	2 cut(s)	166, 370
BsiHKAI	GWGCWC	2 cut(s)	40, 471
BsiSI	CCGG	2 cut(s)	41, 164
BsnI	GGCC	4 cut(s)	44, 216, 313, 431
Bsp1286I	GDGCHC	2 cut(s)	40, 471
Bsp143I	GATC	4 cut(s)	14, 115, 139, 415
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	4 cut(s)	44, 216, 313, 431
BspCNI	CTCAG	2 cut(s)	532, 559
BspFNI	CGCG	2 cut(s)	53, 486
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	141, 168, 372
BspPI	GGATC	4 cut(s)	22, 134, 147, 410
BspT107I	GGYRCC	2 cut(s)	166, 370
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	4 cut(s)	14, 115, 139, 415
Bst4CI	ACNGT	1 cut(s)	308
BstDEI	CTNAG	3 cut(s)	210, 519, 567
BstF5I	GGATG	2 cut(s)	304, 562
BstFNI	CGCG	2 cut(s)	53, 486
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	4 cut(s)	17, 118, 142, 418
BstMBI	GATC	4 cut(s)	14, 115, 139, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 222, 231, 524
BstUI	CGCG	2 cut(s)	53, 486
BstV1I	GCAGC	2 cut(s)	514, 527
BstX2I	RGATCY	2 cut(s)	14, 139
BstYI	RGATCY	2 cut(s)	14, 139
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	44, 216, 313, 431
BtsCI	GGATG	2 cut(s)	304, 562
BtsIMutI	CAGTG	1 cut(s)	313
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	3 cut(s)	214, 311, 456
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	70, 443
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	210, 519, 567
DpnI	GATC	4 cut(s)	16, 117, 141, 417
DpnII	GATC	4 cut(s)	14, 115, 139, 415
DraI	TTTAAA	1 cut(s)	79
EaeI	YGGCCR	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	456
FaeI	CATG	2 cut(s)	73, 446
FaiI	YATR	4 cut(s)	32, 71, 444, 474
FatI	CATG	2 cut(s)	69, 442
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	516, 528
FokI	GGATG	2 cut(s)	311, 569
Fsp4HI	GCNGC	2 cut(s)	516, 528
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	2 cut(s)	516, 528
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	4 cut(s)	44, 216, 313, 431
HapII	CCGG	2 cut(s)	41, 164
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	73, 446
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	176, 278, 290
HpaII	CCGG	2 cut(s)	41, 164
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	7 cut(s)	120, 175, 277, 289, 295, 522, 568
Hpy188III	TCNNGA	3 cut(s)	62, 379, 443
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	93, 385, 517
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4V	TGCA	7 cut(s)	94, 110, 136, 188, 302, 330, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 222, 231, 524
HpyF3I	CTNAG	3 cut(s)	210, 519, 567
Hsp92II	CATG	2 cut(s)	73, 446
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	14, 115, 139, 415
LmnI	GCTCC	2 cut(s)	25, 43
LpnPI	CCDG	6 cut(s)	36, 54, 80, 122, 156, 177
Lsp1109I	GCAGC	2 cut(s)	514, 527
LweI	GCATC	2 cut(s)	289, 339
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	16, 117, 141, 417
MboI	GATC	4 cut(s)	14, 115, 139, 415
MboII	GAAGA	2 cut(s)	96, 144
MflI	RGATCY	2 cut(s)	14, 139
MhlI	GDGCHC	2 cut(s)	40, 471
MluCI	AATT	2 cut(s)	159, 338
MnlI	CCTC	7 cut(s)	185, 289, 292, 316, 484, 487, 529
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	7 cut(s)	48, 78, 123, 354, 426, 477, 543
MslI	CAYNNNNRTG	1 cut(s)	568
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	2 cut(s)	41, 164
MvnI	CGCG	2 cut(s)	53, 486
MwoI	GCNNNNNNNGC	4 cut(s)	50, 222, 231, 524
NdeII	GATC	4 cut(s)	14, 115, 139, 415
NlaIII	CATG	2 cut(s)	73, 446
NlaIV	GGNNCC	3 cut(s)	141, 168, 372
PagI	TCATGA	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	176, 278, 290
PkrI	GCNGC	2 cut(s)	517, 529
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
PspN4I	GGNNCC	3 cut(s)	141, 168, 372
PspPI	GGNCC	3 cut(s)	214, 311, 456
PspPPI	RGGWCCY	1 cut(s)	456
PsuI	RGATCY	2 cut(s)	14, 139
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	568
SaqAI	TTAA	7 cut(s)	48, 78, 123, 354, 426, 477, 543
SatI	GCNGC	2 cut(s)	516, 528
Sau3AI	GATC	4 cut(s)	14, 115, 139, 415
Sau96I	GGNCC	3 cut(s)	214, 311, 456
SduI	GDGCHC	2 cut(s)	40, 471
SetI	ASST	7 cut(s)	85, 91, 211, 246, 451, 458, 520
SfaNI	GCATC	2 cut(s)	289, 339
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	568
Sse9I	AATT	2 cut(s)	159, 338
SsiI	CCGC	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	159, 338
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	176, 278, 290
Tru1I	TTAA	7 cut(s)	48, 78, 123, 354, 426, 477, 543
Tru9I	TTAA	7 cut(s)	48, 78, 123, 354, 426, 477, 543
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	515, 527
TspDTI	ATGAA	2 cut(s)	459, 573
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.