Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002956

Physical Location & Seq

Genomic Coordinates Forward (+)

322775 .. 324308

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTAAAGAAAAAGGAGATATTACCGTTAGTTCTCGTTGGTCCAGGGTGAAAGATAGTCTGCGGAATGACCCAAGGTACAAAAATGTTAGGCATGAGGATAGGGAAGTTTTATTCAATGAGTATATTTCGGAACTAAAAGATGTGGAAGAGGAAGCAGAACGAGAGGCAAAAGCTAAACGTGATGAGCAGGAAAAACTGAGGGAAAGGGAACGAGAACTGCGGAAGCGGAAGGAAAGAGAAGAGCAAGAAACAGAGAGGGTGCGACTGAAAGTTCGCAGGAAGGAGGCATTTGCTACTTTCCAAGCTTTACTTGTGGAAACAATTAAAGATCCTCAGGCTTCTTGGACAGGCTCTAGGCCTAAATTGGAGAAGGATCCGCAAAGGCGTGCTGCCAACCCTGATTTACGTTATATGGATCGATCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0001085 GO:0001103 GO:0003674 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 ko04212 map03040 map04212

Pfam Domains

Protein Families

FF WW

Protein Analysis

144

Amino Acids

17.39

Weight (kDa)

9.45

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FF	PF01846	1 - 42	7.7e-12	FF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19840
fragaria_vesca	FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700 FvH4_4g36700
malus_domestica	MD13G1007900.v1.1 MD13G1008000.v1.1 MD16G1000200.v1.1
prunus_persica	Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1 Prupe.1G345100_v2.0.a1
pyrus_communis	pycom13g00650 pycom16g00500 pycom16g00510 pycom16g00520
rosa_chinensis	RchiOBHm_Chr4g0446421
rosa_laevigata	RLG00000005662
rosa_multiflora	Rmu_co8175444.1_g000001 Rmu_sc0008360.1_g000005 Rmu_sc0018208.1_g000001 Rmu_sc0025430.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386860
rosa_rugosa	Rorug04G0371200
rosa_samantha	Rh4AG432800 Rh4BG441900 Rh4CG459300 Rh4DG440700
rosa_wichuraiana	Rw4G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	64, 223, 229, 380
AclWI	GGATC	5 cut(s)	326, 371, 384, 417, 426
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	176, 308
AluI	AGCT	2 cut(s)	176, 308
AlwI	GGATC	5 cut(s)	326, 371, 384, 417, 426
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspS9I	GGNCC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	46
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	45, 74
Bse21I	CCTNAGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	46
BseCI	ATCGAT	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	45, 74
BseMII	CTCAG	2 cut(s)	191, 350
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	1 cut(s)	361
BshVI	ATCGAT	1 cut(s)	421
BsnI	GGCC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	331, 376, 418, 422
BspACI	CCGC	4 cut(s)	64, 223, 229, 380
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	192, 349
BspDI	ATCGAT	1 cut(s)	421
BspLI	GGNNCC	1 cut(s)	378
BspPI	GGATC	5 cut(s)	326, 371, 384, 417, 426
BspQI	GCTCTTC	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	45, 74
BssMI	GATC	4 cut(s)	331, 376, 418, 422
BssT1I	CCWWGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	144, 237
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	200, 336
BstKTI	GATC	4 cut(s)	334, 379, 421, 425
BstMBI	GATC	4 cut(s)	331, 376, 418, 422
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	331, 376
BstYI	RGATCY	2 cut(s)	331, 376
Bsu15I	ATCGAT	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	361
BsuTUI	ATCGAT	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	42
ClaI	ATCGAT	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	5 cut(s)	176, 308, 341, 354, 361
CviKI_1	RGCY	5 cut(s)	176, 308, 341, 354, 361
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	200, 336
DpnI	GATC	4 cut(s)	333, 378, 420, 424
DpnII	GATC	4 cut(s)	331, 376, 418, 422
Eam1104I	CTCTTC	2 cut(s)	144, 237
EarI	CTCTTC	2 cut(s)	144, 237
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	1 cut(s)	98
FaiI	YATR	4 cut(s)	96, 126, 414, 416
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	361
Hin1II	CATG	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	306
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	133, 431
HpyAV	CCTTC	3 cut(s)	226, 277, 367
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	181, 409
HpyF3I	CTNAG	2 cut(s)	200, 336
HpySE526I	ACGT	2 cut(s)	181, 409
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	4 cut(s)	331, 376, 418, 422
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	31, 58, 176, 265, 323, 336, 414
Lsp1109I	GCAGC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	2 cut(s)	181, 409
MalI	GATC	4 cut(s)	333, 378, 420, 424
MboI	GATC	4 cut(s)	331, 376, 418, 422
MboII	GAAGA	2 cut(s)	161, 254
MflI	RGATCY	2 cut(s)	331, 376
MluCI	AATT	2 cut(s)	324, 365
MnlI	CCTC	7 cut(s)	91, 145, 160, 195, 252, 280, 345
MseI	TTAA	2 cut(s)	6, 327
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NdeII	GATC	4 cut(s)	331, 376, 418, 422
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	331, 376
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	6, 327
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	331, 376, 418, 422
Sau96I	GGNCC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	5 cut(s)	80, 178, 184, 310, 412
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	2 cut(s)	324, 365
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	4 cut(s)	64, 223, 229, 380
SspMI	CTAG	1 cut(s)	357
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	184, 412
TaqI	TCGA	1 cut(s)	421
TasI	AATT	2 cut(s)	324, 365
Tru1I	TTAA	2 cut(s)	6, 327
Tru9I	TTAA	2 cut(s)	6, 327
TseI	GCWGC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	42
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.