Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009374

Physical Location & Seq

Genomic Coordinates Reverse (-)

6252170 .. 6254778

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTATTTGCCGGAAAAGGCTCGACCAATCGATTTCTACAAAGAGGAAGCCAGCCGGGACATGATGATGGAGGTGGTGGTCTCGAACGAGGACCTTCCCCAATCCCAAGCTCATCTTCACCAGCCGCCGCCGCAACAGATGCTTATGGGTGACAGCAGCGGTGAGGACCACGAAGTGAGGGCGCCGAAGAAGCGAGCCGAGACTTGGGTGCAGGACGAGACCCGAAGCTTAATAGCCCTCCGTCGCGGGATGGACGGCTTGTTCAACACCTCCAAGTCGAACAAGCACTTGTGGGAGCAGATTTCTGCGAAGATGAGAGAGAAAGGGTTTGATCGGTCGCCGACGATGTGCACGGACAAGTGGAGGAACTTGCTGAAAGAGTTCAAGAAGGCCAAGCACCATGATAGGGGAAGTGGGTCAGCTAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAAGGATAGAAGCAAGAATACGCAGTACAAAAGCCCCACTCCCCCAAAGGTCGATTCTTTCGTGCAATTTTCAGATAAAGGTATTGAAGATGCAAGCATTTCATTTGCACCTGTTGAAGGTTCCTTGGTGCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

199

Amino Acids

22.82

Weight (kDa)

8.52

Isoelectric Point (pI)

67.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	68 - 152	6.1e-24	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13450 AT1G13450 AT1G13450
fragaria_vesca	FvH4_6g52740
malus_domestica	MD06G1052100.v1.1 MD17G1017400.v1.1
prunus_persica	Prupe.3G300500_v2.0.a1
pyrus_communis	pycom06g06930 pycom16g09330 pycom17g01400
rosa_chinensis	RchiOBHm_Chr2g0174361
rosa_laevigata	RLG00000022260
rosa_multiflora	Rmu_co8108256.1_g000001 Rmu_co8252927.1_g000001 Rmu_sc0003649.1_g000031
rosa_roxburghii	Rroxscaffold_2G00078270
rosa_rugosa	Rorug02G0576400
rosa_samantha	Rh2AG657400 Rh2BG668400 Rh2CG631500 Rh2DG682000
rosa_wichuraiana	Rw2G053840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	125, 128, 131, 159, 246
AcyI	GRCGYC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
AgsI	TTSAA	5 cut(s)	265, 385, 460, 545, 575
AjuI	GAANNNNNNNTTGG	4 cut(s)	99, 131, 496, 528
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	4 cut(s)	110, 228, 422, 594
AluI	AGCT	4 cut(s)	110, 228, 422, 594
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	85, 194, 212
Alw44I	GTGCAC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	390
ApaLI	GTGCAC	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	156, 591
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	184, 591
AspS9I	GGNCC	2 cut(s)	91, 166
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	3 cut(s)	110, 161, 173
AvaII	GGWCC	2 cut(s)	91, 166
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	2 cut(s)	460, 492
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	61, 244
BceAI	ACGGC	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	85, 194, 212
BfaI	CTAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
BlsI	GCNGC	5 cut(s)	126, 129, 132, 158, 593
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	2 cut(s)	91, 166
BmgT120I	GGNCC	2 cut(s)	91, 166
BmiI	GGNNCC	2 cut(s)	183, 580
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	129, 538
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	85, 212
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	168
BsgI	GTGCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	11, 55
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	204, 406, 575
BsmAI	GTCTC	3 cut(s)	85, 194, 212
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	2 cut(s)	85, 212
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	5 cut(s)	125, 128, 131, 159, 246
BspANI	GGCC	1 cut(s)	392
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	183, 580
BspT107I	GGYRCC	1 cut(s)	181
BspTNI	GGTCTC	2 cut(s)	85, 212
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	1 cut(s)	331
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	582
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	52, 195, 553
BstDEI	CTNAG	1 cut(s)	423
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	184, 591
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	3 cut(s)	85, 194, 212
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	52, 195, 553
CfoI	GCGC	2 cut(s)	184, 591
Cfr13I	GGNCC	2 cut(s)	91, 166
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	2 cut(s)	61, 401
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	423
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraIII	CACNNNGTG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	582
Eco31I	GGTCTC	2 cut(s)	85, 212
Eco47I	GGWCC	2 cut(s)	91, 166
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	2 cut(s)	64, 404
FaiI	YATR	3 cut(s)	62, 146, 402
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	60, 400
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
FspBI	CTAG	1 cut(s)	595
FspI	TGCGCA	1 cut(s)	590
GlaI	GCGC	2 cut(s)	183, 590
GluI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	2 cut(s)	11, 55
HhaI	GCGC	2 cut(s)	184, 591
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	64, 404
Hin6I	GCGC	2 cut(s)	182, 589
HinP1I	GCGC	2 cut(s)	182, 589
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	11, 55
HphI	GGTGA	3 cut(s)	110, 161, 173
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	2 cut(s)	82, 385
Hpy8I	GTNNAC	1 cut(s)	351
Hpy99I	CGWCG	2 cut(s)	246, 346
HpyAV	CCTTC	4 cut(s)	104, 382, 454, 569
HpyCH4V	TGCA	5 cut(s)	211, 351, 523, 551, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
HpyF3I	CTNAG	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	64, 404
HspAI	GCGC	2 cut(s)	182, 589
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	6 cut(s)	24, 64, 68, 134, 197, 582
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	129, 538
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	107, 199, 322, 557
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	524
Mly113I	GGCGCC	1 cut(s)	182
MnlI	CCTC	9 cut(s)	37, 64, 82, 157, 171, 248, 280, 357, 442
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	2 cut(s)	11, 55
MspR9I	CCNGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	130, 139, 190
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	64, 404
NlaIV	GGNNCC	2 cut(s)	183, 580
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	126, 129, 132, 158, 593
PluTI	GGCGCC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	183, 580
PspPI	GGNCC	2 cut(s)	91, 166
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	5 cut(s)	125, 128, 131, 157, 592
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	91, 166
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	129, 538
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	2 cut(s)	91, 166
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	5 cut(s)	125, 128, 131, 159, 246
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	582
TaqI	TCGA	5 cut(s)	22, 30, 83, 278, 510
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	3 cut(s)	127, 130, 133
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	2 cut(s)	156, 591
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	2 cut(s)	230, 368
VneI	GTGCAC	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	91, 166
XagI	CCTNNNNNAGG	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.