Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006870

Physical Location & Seq

Genomic Coordinates Forward (+)

7455546 .. 7457361

Gene Structure 1816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGTCCAGACCCACCGTTGAGCTTGATTTTTTCGGCATGGACCAGCACCACCGCGATGCCCCCTCCTCCTCCTCCTCCTCCAAATCCCAGTTCCAGAAATTTCTCCACCGCCCCAAAAGCTTCCGAGGCATTCACACCGCCATGTCCAAGATCAATCCCGAGGCCTTCAAATCCGTCATCGCTTCCGGCGATGCCAGCCCCAGTGTTCCAAATCCGGGGAAATCGTTTTCGGTGCCGTCGAGCCCCAAGGCGGAGCAAGTCCCGTTTTCCTCGTTGCCGCTCTATGTTCCCACCGGCATTTCCGCCTCTTCTTTCACGGCTGCTGCTTCCGAGAGCCTTCAGGAAACGAAGCCGCTGACGATTTTCTACAACGGTACCGTTTCTGTTTTCGACGTCCATCGTGACAAGGTGGATGGCATATTGAAGCTTGCCTTACAAGGAAACTCCGGCAAAGCAGCATCGGCATCGGTAGCCGTCGATCCAAAACTTGCTTTTCATCCAAGCGAGCAGCATCAGACTCAGCAGCTTGTGGATCCTCTTAGCGGATATCTACCAATTAGTCGCAATAAGTCATTGCAAAGGTTTCTTGAGAAACGCAAAGAGAGGATGAATTCGGGGTCTCCATATTCCTGCCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010033 GO:0010112 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032101 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044464 GO:0045088 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0050776 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

214

Amino Acids

23.13

Weight (kDa)

9.57

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	114 - 144	1.8e-10	tify domain
Jas_motif	PF09425	185 - 210	1.3e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220 AT5G13220
fragaria_vesca	FvH4_4g23000 FvH4_4g23000
malus_domestica	MD13G1127100.v1.1 MD16G1127400.v1.1
prunus_persica	Prupe.1G218500_v2.0.a1
pyrus_communis	pycom13g11020 pycom16g10820
rosa_chinensis	RchiOBHm_Chr4g0429271
rosa_laevigata	RLG00000007085
rosa_multiflora	Rmu_sc0000054.1_g000018 Rmu_sc0036209.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370890
rosa_rugosa	Rorug04G0234600 Rorug04G0234700
rosa_samantha	Rh4AG290300 Rh4BG296000 Rh4CG311800 Rh4DG293100
rosa_wichuraiana	Rw4G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
Acc65I	GGTACC	1 cut(s)	374
AccB1I	GGYRCC	2 cut(s)	232, 374
AccBSI	CCGCTC	1 cut(s)	280
AccII	CGCG	1 cut(s)	54
AciI	CCGC	8 cut(s)	52, 109, 138, 251, 278, 303, 353, 543
AclWI	GGATC	3 cut(s)	473, 527, 540
AcsI	RAATTY	2 cut(s)	98, 610
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	3 cut(s)	215, 250, 542
AgsI	TTSAA	2 cut(s)	169, 424
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	22, 120, 427, 526
AluI	AGCT	4 cut(s)	22, 120, 427, 526
Alw26I	GTCTC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	473, 527, 540
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	320, 323, 455, 508, 523
ApoI	RAATTY	2 cut(s)	98, 610
Asp718I	GGTACC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	40
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	2 cut(s)	232, 374
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	5 cut(s)	307, 310, 467, 520, 535
BccI	CCATC	2 cut(s)	405, 407
BceAI	ACGGC	3 cut(s)	220, 333, 458
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	624
BisI	GCNGC	7 cut(s)	278, 321, 324, 353, 456, 509, 524
BlsI	GCNGC	7 cut(s)	279, 322, 325, 354, 457, 510, 525
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	234, 376, 534
BmrFI	CCNGG	1 cut(s)	216
BmrI	ACTGGG	2 cut(s)	82, 195
BmsI	GCATC	5 cut(s)	46, 181, 467, 473, 520
BmuI	ACTGGG	2 cut(s)	82, 195
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	4 cut(s)	124, 159, 215, 246
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 250, 542
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	88, 201
Bse3DI	GCAATG	1 cut(s)	572
BseDI	CCNNGG	4 cut(s)	124, 159, 215, 246
BseGI	GGATG	3 cut(s)	418, 496, 612
BseLI	CCNNNNNNNGG	3 cut(s)	215, 250, 542
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	2 cut(s)	88, 201
BseRI	GAGGAG	5 cut(s)	55, 58, 61, 64, 67
BseXI	GCAGC	5 cut(s)	307, 310, 467, 520, 535
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	2 cut(s)	232, 374
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	186, 215, 294, 447
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	215, 250, 542
BsmAI	GTCTC	1 cut(s)	624
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	150, 478, 532
BspACI	CCGC	8 cut(s)	52, 109, 138, 251, 278, 303, 353, 543
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	3 cut(s)	234, 376, 534
BspPI	GGATC	3 cut(s)	473, 527, 540
BspT107I	GGYRCC	2 cut(s)	232, 374
BspTNI	GGTCTC	1 cut(s)	624
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	572
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	88, 201
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	4 cut(s)	124, 159, 215, 246
BssMI	GATC	3 cut(s)	150, 478, 532
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	16, 374, 379
Bst6I	CTCTTC	1 cut(s)	313
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	196, 429, 506
BstDEI	CTNAG	2 cut(s)	519, 539
BstF5I	GGATG	3 cut(s)	418, 496, 612
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	153, 481, 535
BstMAI	GTCTC	1 cut(s)	624
BstMBI	GATC	3 cut(s)	150, 478, 532
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 126, 195, 461, 470
BstSCI	CCNGG	1 cut(s)	214
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	307, 310, 467, 520, 535
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	164
BtgZI	GCGATG	3 cut(s)	69, 163, 204
BtsCI	GGATG	3 cut(s)	418, 496, 612
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	196, 429, 506
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	2 cut(s)	37, 142
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	2 cut(s)	519, 539
DpnI	GATC	3 cut(s)	152, 480, 534
DpnII	GATC	3 cut(s)	150, 478, 532
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	2 cut(s)	266, 292
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	40, 145
FaiI	YATR	5 cut(s)	38, 143, 285, 419, 625
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	36, 141
Fnu4HI	GCNGC	7 cut(s)	278, 321, 324, 353, 456, 509, 524
FokI	GGATG	3 cut(s)	425, 483, 619
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	7 cut(s)	278, 321, 324, 353, 456, 509, 524
GluI	GCNGC	7 cut(s)	278, 321, 324, 353, 456, 509, 524
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	4 cut(s)	186, 215, 294, 447
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	40, 145
HindIII	AAGCTT	2 cut(s)	118, 425
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	4 cut(s)	186, 215, 294, 447
Hpy188I	TCNGA	3 cut(s)	125, 331, 516
Hpy188III	TCNNGA	6 cut(s)	6, 94, 158, 341, 401, 587
Hpy99I	CGWCG	3 cut(s)	241, 395, 479
HpyAV	CCTTC	2 cut(s)	175, 347
HpyCH4III	ACNGT	3 cut(s)	16, 374, 379
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 126, 195, 461, 470
HpyF3I	CTNAG	2 cut(s)	519, 539
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	40, 145
KpnI	GGTACC	1 cut(s)	378
Kzo9I	GATC	3 cut(s)	150, 478, 532
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	5 cut(s)	307, 310, 467, 520, 535
LweI	GCATC	5 cut(s)	46, 181, 467, 473, 520
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	3 cut(s)	152, 480, 534
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	3 cut(s)	150, 478, 532
MboII	GAAGA	1 cut(s)	300
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	3 cut(s)	98, 555, 610
MlyI	GAGTC	1 cut(s)	511
MslI	CAYNNNNRTG	2 cut(s)	54, 140
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	4 cut(s)	186, 215, 294, 447
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	129
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	117, 126, 195, 461, 470
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	150, 478, 532
NlaIII	CATG	2 cut(s)	40, 145
NlaIV	GGNNCC	3 cut(s)	234, 376, 534
NmuCI	GTSAC	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 236
PctI	GAATGC	1 cut(s)	129
PkrI	GCNGC	7 cut(s)	279, 322, 325, 354, 457, 510, 525
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PspN4I	GGNNCC	3 cut(s)	234, 376, 534
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	2 cut(s)	54, 140
SatI	GCNGC	7 cut(s)	278, 321, 324, 353, 456, 509, 524
Sau3AI	GATC	3 cut(s)	150, 478, 532
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	8 cut(s)	24, 122, 396, 411, 429, 528, 584, 641
SfaNI	GCATC	5 cut(s)	46, 181, 467, 473, 520
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	54, 140
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	3 cut(s)	98, 555, 610
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	8 cut(s)	52, 109, 138, 251, 278, 303, 353, 543
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	16, 374, 379
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	3 cut(s)	239, 390, 477
TasI	AATT	3 cut(s)	98, 555, 610
TauI	GCSGC	2 cut(s)	280, 355
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	5 cut(s)	320, 323, 455, 508, 523
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	485, 623
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	98, 610
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.