Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004792

Physical Location & Seq

Genomic Coordinates Reverse (-)

8070793 .. 8075169

Gene Structure 4377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGCTGGCCAAAGTTCCTGCTCCGGCGGCAGTCAACCATCACCACCACCTCCTGCGGCCAAAACGCCTTGAACCGGAATCATGGATGGCGGGAACCCACAGCAGCAAGTGTCTCTATCTTCATCAGACGAGAAAATGGGGGATTAGTTGCAGTTTCAGTCAGAGACCCACCGATAACCCTATAGCTGCAGCAGAAGCTTCTTATGACCTCATGGACGATTTCATCGTCCTCGGACAAGACAAAAATGCCCCTCCCACTCCCACCACCAGAAACACTACCACCCATCCAGGTAATGACCGTCAACCGGCACCTACTACTAGGAGAGTTGCTCAAAGTTTCGGGAGGCTGAAAGTACATAGAGTGAAATCTATAGCTGAGAAACCTTCTCGGATTAAGCAAGAAATAGATGAAAGTGATGATGAAGTAAATGTGCAAGATGCACCACCATTTGTCAATCCCCGTTCAAGACTTGGATTTGATGGGAAAAAGAACAAAGCAGATGCCCACGGTCTTGGTGGAAGACGTTCAAGTGATTCCCACTCGAAAGAGTTTAGGGACAGGAGGCGGAGGAAGGGGACAGCCAACAACATGGACCATTCTCCTGTGAAAAGGACGGAAAATGGTCTTGAGCCAATCTCTGACAATCAAAACGAGCACCATAAGCCTTATAGGTCTGACACCAACATAGCCAGACAAAAGGATTCAGCTCCAAGAGGTTCTTCTTCTGCTCACTCAAAAGGATGGGGCAATGGAGGAGGGTCCATGTATGACTTGGCTGAGTTGCCCGACCTAAATCAGCGAAGGAAATTTTCCACCGACAATGACTTTTTCAGTCGAAAATCCTTCAGGGATGTGGGTTGCAGTGAATATATGATTGAATGTCTGAAGAGGCAGCTTTTCCAGCGCCCATCACATATTCAGGCCATGGCATTTGGTCCTGTTGTTGAGGGGAAAACGTCTATTATAGCAGACCAAAGTGGATCTGGCAAGACATTAGCTTACCTTGCTCCAGTAATTCAGCGTATAAGGGAAGAAGAACTTCAAGGGCTGAGCAAGTCCTCGTCAATGAGTCCTCGAGTTGTTATACTGGTACCAACTGCTGAGTTAGCTTCTCAGGTTTTGGGTGTTTGCCGTTCAATGTCAAAATTTGGGGTTCCAGTTAGGTCTATGGTTGTAACTGGTGGTCATCGGCAGAAAACTCAGATGGAAAGTTTAGAACAAGGTGTGGATATCTTAATAGCAACACCTGGTCGGTTTATGTATCTGATTAAAGAGGGCTTCGTGCACTTATCAAATCTAAGATGCGCTGTACTGGATGAGGTAGATATACTCTTTAATGATGAGGATTTTGAAGCAGCACTGGAAAGTTTAATCAATTCTGCACCTGTTACCATGCAATATCTTTTTGTGACTGCAACGTTACCCCTTGGAATTTACAACAAATTGGTTGAATCCTTTCCTGATTGTAAAGTAGTCATGGCACCTGGAATGCACCGTATAAGCTCTGGCCTTGAAGAGGTGCTTGTAGATTGCAGTGGAGATGATGGAAGTGAAAGATCTCCAGAGAAGGCATTCTCAAATAAGAAATCTGCTCTTCTACAGCTTGTGGAGGGAAGTCCAGTTCCCAAATCGATAATTTTCTGCAACAAGATTGAGACGTGCAGAAAAGTTGAGAATATATTAACACGTTTTGACAGAAGTGGAACTCGTGTTCGGGTTCTACCATTCCACTCTGCCTTGGCCCAAGGATCAAGACTCGCAAATATGGAGGAGTTCACCAATTCTCATTCAAAGGAAGTCTCACAGTTTTTGGTTTGCACTGATAGAGCATCGCGTGGAATCGACTTTACTGGTGTGGATCATGTTATACTCTTTGACTTCCCCCGCGATCCAAGTGAGTATGTACGACGTGTTGGAAGAACTGCCCGAGGTGCTGGAGGAATCGGTAAGGCGTTCATCTTTGTGGTGGGGAAACAAGTCTCCCTTGCGGGAAAGATAATGGAAAGAAACCGGAAAGGTCACCCGGTGCACGATGTACCAGCTGCATATGAGCTTTTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006968 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0010501 GO:0014070 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0035690 GO:0042221 GO:0042493 GO:0042623 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046483 GO:0046677 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070013 GO:0070035 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0098542 GO:0140098 GO:1901360 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

688

Amino Acids

76.29

Weight (kDa)

9.2

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	305 - 475	1.9e-33	DEAD/DEAH box helicase
Helicase_C	PF00271	528 - 643	4.1e-23	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06980
fragaria_vesca	FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860 FvH4_4g21860
malus_domestica	MD16G1131600.v1.1
prunus_persica	Prupe.1G209200_v2.0.a1
pyrus_communis	pycom16g11600
rosa_chinensis	RchiOBHm_Chr4g0410871 RchiOBHm_Chr4g0428121
rosa_laevigata	RLG00000007180 RLG00000008393
rosa_multiflora	Rmu_sc0004940.1_g000014 Rmu_sc0007108.1_g000006 Rmu_sc0009599.1_g000014
rosa_roxburghii	Rroxscaffold_5G00369830
rosa_rugosa	Rorug04G0222400
rosa_samantha	Rh4AG163400 Rh4AG279700 Rh4BG285100 Rh4CG176300 Rh4CG300700 Rh4DG159100 Rh4DG282200
rosa_wichuraiana	Rw0G005430 Rw4G024300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1090
AccB1I	GGYRCC	3 cut(s)	307, 1090, 1480
AccII	CGCG	2 cut(s)	1834, 1887
AciI	CCGC	6 cut(s)	26, 55, 89, 565, 1885, 1988
AclI	AACGTT	1 cut(s)	1418
AclWI	GGATC	4 cut(s)	988, 1756, 1866, 1883
AcoI	YGGCCR	2 cut(s)	6, 56
AcsI	RAATTY	3 cut(s)	806, 1145, 1431
AcuI	CTGAAG	2 cut(s)	829, 905
AdeI	CACNNNGTG	1 cut(s)	2026
AfaI	GTAC	6 cut(s)	354, 1092, 1311, 1905, 2037, 2060
AfiI	CCNNNNNNNGG	3 cut(s)	73, 304, 1516
AflIII	ACRYGT	2 cut(s)	1685, 1909
AjiI	CACGTC	2 cut(s)	1659, 1910
AjnI	CCWGG	3 cut(s)	286, 1246, 1483
AjuI	GAANNNNNNNTTGG	2 cut(s)	703, 735
AloI	GAACNNNNNNTCC	4 cut(s)	1605, 1637, 1695, 1727
Alw21I	GWGCWC	3 cut(s)	657, 1287, 2031
Alw26I	GTCTC	5 cut(s)	116, 157, 1649, 1804, 1984
Alw44I	GTGCAC	2 cut(s)	1283, 2027
AlwI	GGATC	4 cut(s)	988, 1756, 1866, 1883
Ama87I	CYCGRG	2 cut(s)	1074, 1926
AoxI	GGCC	5 cut(s)	6, 56, 921, 1507, 1740
ApaLI	GTGCAC	2 cut(s)	1283, 2027
ApeKI	GCWGC	6 cut(s)	102, 185, 188, 892, 1355, 2042
ApoI	RAATTY	3 cut(s)	806, 1145, 1431
Asp700I	GAANNNNTTC	4 cut(s)	523, 1038, 1455, 1571
Asp718I	GGTACC	1 cut(s)	1090
AspLEI	GCGC	2 cut(s)	906, 1307
AspS9I	GGNCC	4 cut(s)	592, 759, 935, 1741
AsuC2I	CCSGG	1 cut(s)	2024
AsuHPI	GGTGA	3 cut(s)	32, 1768, 2012
AvaI	CYCGRG	2 cut(s)	1074, 1926
AvaII	GGWCC	3 cut(s)	592, 759, 935
BaeGI	GKGCMC	2 cut(s)	1287, 2031
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	3 cut(s)	307, 1090, 1480
BauI	CACGAG	1 cut(s)	1707
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	3 cut(s)	657, 1287, 2031
BbvI	GCAGC	6 cut(s)	114, 172, 200, 904, 1367, 2029
BccI	CCATC	8 cut(s)	45, 79, 291, 473, 735, 916, 1198, 1538
BceAI	ACGGC	1 cut(s)	1116
BciT130I	CCWGG	3 cut(s)	288, 1248, 1485
BcnI	CCSGG	1 cut(s)	2024
BcoDI	GTCTC	5 cut(s)	116, 157, 1649, 1804, 1984
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	4 cut(s)	180, 186, 369, 1598
BfoI	RGCGCY	1 cut(s)	907
BglII	AGATCT	1 cut(s)	1556
BisI	GCNGC	8 cut(s)	27, 56, 103, 186, 189, 893, 1356, 2043
BlpI	GCTNAGC	1 cut(s)	1049
BlsI	GCNGC	8 cut(s)	28, 57, 104, 187, 190, 894, 1357, 2044
Bme1390I	CCNGG	4 cut(s)	288, 1248, 1485, 2024
Bme18I	GGWCC	3 cut(s)	592, 759, 935
BmeT110I	CYCGRG	2 cut(s)	1074, 1926
BmgBI	CACGTC	2 cut(s)	1659, 1910
BmgT120I	GGNCC	4 cut(s)	592, 759, 935, 1741
BmiI	GGNNCC	6 cut(s)	94, 309, 760, 1092, 1155, 1482
BmrFI	CCNGG	4 cut(s)	288, 1248, 1485, 2024
BmsI	GCATC	4 cut(s)	427, 490, 1292, 1838
BpiI	GAAGAC	1 cut(s)	526
BplI	GAGNNNNNCTC	4 cut(s)	313, 345, 620, 652
BpmI	CTGGAG	3 cut(s)	993, 1545, 1956
Bpu1102I	GCTNAGC	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	2024
Bsa29I	ATCGAT	1 cut(s)	1631
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	7 cut(s)	229, 505, 924, 1426, 1737, 1744, 1927
BsaWI	WCCGGW	2 cut(s)	73, 2010
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 304, 1516
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	8 cut(s)	1010, 1092, 1157, 1183, 1317, 1365, 1619, 1855
Bse3DI	GCAATG	1 cut(s)	754
BseBI	CCWGG	3 cut(s)	288, 1248, 1485
BseCI	ATCGAT	1 cut(s)	1631
BseDI	CCNNGG	7 cut(s)	229, 505, 924, 1426, 1737, 1744, 1927
BseGI	GGATG	5 cut(s)	90, 283, 746, 856, 1321
BseLI	CCNNNNNNNGG	3 cut(s)	73, 304, 1516
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	6 cut(s)	366, 768, 1040, 1092, 1127, 1214
BseNI	ACTGG	8 cut(s)	1010, 1092, 1157, 1183, 1317, 1365, 1619, 1855
BseRI	GAGGAG	2 cut(s)	768, 1784
BseSI	GKGCMC	2 cut(s)	1287, 2031
BseXI	GCAGC	6 cut(s)	114, 172, 200, 904, 1367, 2029
BsgI	GTGCAG	2 cut(s)	1365, 1681
Bsh1236I	CGCG	2 cut(s)	1834, 1887
BshFI	GGCC	5 cut(s)	8, 58, 923, 1509, 1742
BshNI	GGYRCC	3 cut(s)	307, 1090, 1480
BshVI	ATCGAT	1 cut(s)	1631
BsiHKAI	GWGCWC	3 cut(s)	657, 1287, 2031
BsiHKCI	CYCGRG	2 cut(s)	1074, 1926
BsiSI	CCGG	5 cut(s)	23, 74, 305, 2011, 2024
BslFI	GGGAC	2 cut(s)	569, 589
BslI	CCNNNNNNNGG	3 cut(s)	73, 304, 1516
BsmAI	GTCTC	5 cut(s)	116, 157, 1649, 1804, 1984
BsmBI	CGTCTC	1 cut(s)	1649
BsmFI	GGGAC	2 cut(s)	569, 589
BsmI	GAATGC	2 cut(s)	1494, 1571
BsnI	GGCC	5 cut(s)	8, 58, 923, 1509, 1742
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	2 cut(s)	1074, 1926
Bsp1286I	GDGCHC	3 cut(s)	657, 1287, 2031
Bsp143I	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
Bsp1720I	GCTNAGC	1 cut(s)	1049
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	6 cut(s)	26, 55, 89, 565, 1885, 1988
BspANI	GGCC	5 cut(s)	8, 58, 923, 1509, 1742
BspCNI	CTCAG	6 cut(s)	367, 769, 1041, 1093, 1126, 1213
BspDI	ATCGAT	1 cut(s)	1631
BspFNI	CGCG	2 cut(s)	1834, 1887
BspLI	GGNNCC	6 cut(s)	94, 309, 760, 1092, 1155, 1482
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	4 cut(s)	988, 1756, 1866, 1883
BspQI	GCTCTTC	1 cut(s)	1599
BspT107I	GGYRCC	3 cut(s)	307, 1090, 1480
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	754
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	8 cut(s)	1010, 1092, 1157, 1183, 1317, 1365, 1619, 1855
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	7 cut(s)	229, 505, 924, 1426, 1737, 1744, 1927
BssMI	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
BssSI	CACGAG	1 cut(s)	1707
BssT1I	CCWWGG	4 cut(s)	924, 1426, 1737, 1744
Bst2BI	CACGAG	1 cut(s)	1707
Bst2UI	CCWGG	3 cut(s)	288, 1248, 1485
Bst4CI	ACNGT	4 cut(s)	299, 509, 1496, 1806
Bst6I	CTCTTC	3 cut(s)	881, 1509, 1599
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	7 cut(s)	375, 777, 1049, 1101, 1113, 1200, 1298
BstDSI	CCRYGG	2 cut(s)	505, 924
BstEII	GGTNACC	1 cut(s)	2018
BstENI	CCTNNNNNAGG	1 cut(s)	1514
BstF5I	GGATG	5 cut(s)	90, 283, 746, 856, 1321
BstFNI	CGCG	2 cut(s)	1834, 1887
BstH2I	RGCGCY	1 cut(s)	907
BstHHI	GCGC	2 cut(s)	906, 1307
BstKTI	GATC	5 cut(s)	983, 1559, 1751, 1861, 1891
BstMAI	GTCTC	5 cut(s)	116, 157, 1649, 1804, 1984
BstMBI	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 194, 661, 901, 1004, 1106, 1931
BstNI	CCWGG	3 cut(s)	288, 1248, 1485
BstPI	GGTNACC	1 cut(s)	2018
BstSCI	CCNGG	4 cut(s)	286, 1246, 1483, 2022
BstSFI	CTRYAG	4 cut(s)	180, 186, 369, 1598
BstSLI	GKGCMC	2 cut(s)	1287, 2031
BstUI	CGCG	2 cut(s)	1834, 1887
BstV1I	GCAGC	6 cut(s)	114, 172, 200, 904, 1367, 2029
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	2 cut(s)	980, 1556
BstXI	CCANNNNNNTGG	2 cut(s)	512, 589
BstYI	RGATCY	2 cut(s)	980, 1556
Bsu15I	ATCGAT	1 cut(s)	1631
BsuRI	GGCC	5 cut(s)	8, 58, 923, 1509, 1742
BsuTUI	ATCGAT	1 cut(s)	1631
BtgI	CCRYGG	2 cut(s)	505, 924
BtgZI	GCGATG	1 cut(s)	1815
BtrI	CACGTC	2 cut(s)	1659, 1910
BtsCI	GGATG	5 cut(s)	90, 283, 746, 856, 1321
BtsI	GCAGTG	2 cut(s)	868, 1540
BtsIMutI	CAGTG	4 cut(s)	868, 1358, 1540, 1818
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	906, 1307
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	4 cut(s)	592, 759, 935, 1741
ClaI	ATCGAT	1 cut(s)	1631
CsiI	ACCWGGT	1 cut(s)	1246
Csp6I	GTAC	6 cut(s)	353, 1091, 1310, 1904, 2036, 2059
CviAII	CATG	8 cut(s)	81, 211, 589, 763, 925, 1393, 1477, 1862
CviQI	GTAC	6 cut(s)	353, 1091, 1310, 1904, 2036, 2059
DdeI	CTNAG	7 cut(s)	375, 777, 1049, 1101, 1113, 1200, 1298
DpnI	GATC	5 cut(s)	982, 1558, 1750, 1860, 1890
DpnII	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
DraIII	CACNNNGTG	1 cut(s)	2026
EaeI	YGGCCR	2 cut(s)	6, 56
Eam1104I	CTCTTC	3 cut(s)	881, 1509, 1599
EarI	CTCTTC	3 cut(s)	881, 1509, 1599
EciI	GGCGGA	1 cut(s)	580
Eco130I	CCWWGG	4 cut(s)	924, 1426, 1737, 1744
Eco31I	GGTCTC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	1231
Eco47I	GGWCC	3 cut(s)	592, 759, 935
Eco57I	CTGAAG	2 cut(s)	829, 905
Eco88I	CYCGRG	2 cut(s)	1074, 1926
Eco91I	GGTNACC	1 cut(s)	2018
EcoNI	CCTNNNNNAGG	1 cut(s)	1514
EcoO65I	GGTNACC	1 cut(s)	2018
EcoRII	CCWGG	3 cut(s)	286, 1246, 1483
EcoRV	GATATC	1 cut(s)	1231
EcoT14I	CCWWGG	4 cut(s)	924, 1426, 1737, 1744
ErhI	CCWWGG	4 cut(s)	924, 1426, 1737, 1744
Esp3I	CGTCTC	1 cut(s)	1649
FaeI	CATG	8 cut(s)	84, 214, 592, 766, 928, 1396, 1480, 1865
FalI	AAGNNNNNCTT	8 cut(s)	703, 735, 1023, 1055, 1506, 1538, 1968, 2000
FaqI	GGGAC	2 cut(s)	569, 589
FatI	CATG	8 cut(s)	80, 210, 588, 762, 924, 1392, 1476, 1861
FauI	CCCGC	3 cut(s)	82, 1892, 1981
FauNDI	CATATG	1 cut(s)	2047
Fnu4HI	GCNGC	8 cut(s)	27, 56, 103, 186, 189, 893, 1356, 2043
FokI	GGATG	5 cut(s)	97, 270, 753, 863, 1328
Fsp4HI	GCNGC	8 cut(s)	27, 56, 103, 186, 189, 893, 1356, 2043
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	2 cut(s)	905, 1306
GluI	GCNGC	8 cut(s)	27, 56, 103, 186, 189, 893, 1356, 2043
GsuI	CTGGAG	3 cut(s)	993, 1545, 1956
HaeII	RGCGCY	1 cut(s)	907
HaeIII	GGCC	5 cut(s)	8, 58, 923, 1509, 1742
HapII	CCGG	5 cut(s)	23, 74, 305, 2011, 2024
HhaI	GCGC	2 cut(s)	906, 1307
Hin1II	CATG	8 cut(s)	84, 214, 592, 766, 928, 1396, 1480, 1865
Hin6I	GCGC	2 cut(s)	904, 1305
HinP1I	GCGC	2 cut(s)	904, 1305
HincII	GTYRAC	2 cut(s)	34, 302
HindII	GTYRAC	2 cut(s)	34, 302
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	8 cut(s)	77, 533, 701, 1069, 1451, 1755, 1839, 1941
HpaII	CCGG	5 cut(s)	23, 74, 305, 2011, 2024
HphI	GGTGA	3 cut(s)	32, 1768, 2012
Hpy166II	GTNNAC	5 cut(s)	34, 302, 1285, 1776, 2029
Hpy188I	TCNGA	9 cut(s)	126, 162, 233, 390, 640, 676, 885, 1203, 1266
Hpy188III	TCNNGA	6 cut(s)	340, 465, 626, 1460, 1562, 1752
Hpy8I	GTNNAC	5 cut(s)	34, 302, 1285, 1776, 2029
Hpy99I	CGWCG	1 cut(s)	1911
HpyAV	CCTTC	5 cut(s)	393, 565, 795, 853, 1561
HpyCH4III	ACNGT	4 cut(s)	299, 509, 1496, 1806
HpyCH4IV	ACGT	6 cut(s)	523, 956, 1418, 1658, 1687, 1909
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 194, 661, 901, 1004, 1106, 1931
HpyF3I	CTNAG	7 cut(s)	375, 777, 1049, 1101, 1113, 1200, 1298
HpySE526I	ACGT	6 cut(s)	523, 956, 1418, 1658, 1687, 1909
Hsp92II	CATG	8 cut(s)	84, 214, 592, 766, 928, 1396, 1480, 1865
HspAI	GCGC	2 cut(s)	904, 1305
KpnI	GGTACC	1 cut(s)	1094
Kzo9I	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
LguI	GCTCTTC	1 cut(s)	1599
LmnI	GCTCC	3 cut(s)	25, 712, 1012
Lsp1109I	GCAGC	6 cut(s)	114, 172, 200, 904, 1367, 2029
LweI	GCATC	4 cut(s)	427, 490, 1292, 1838
MabI	ACCWGGT	1 cut(s)	1246
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	6 cut(s)	523, 956, 1418, 1658, 1687, 1909
MaeIII	GTNAC	5 cut(s)	1174, 1387, 1408, 1419, 2018
MalI	GATC	5 cut(s)	982, 1558, 1750, 1860, 1890
MboI	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
MflI	RGATCY	2 cut(s)	980, 1556
MhlI	GDGCHC	3 cut(s)	657, 1287, 2031
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	8 cut(s)	806, 1014, 1145, 1375, 1431, 1442, 1635, 1780
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	1078, 1749
MmeI	TCCRAC	1 cut(s)	1894
Mox20I	TGGCCA	1 cut(s)	8
MroXI	GAANNNNTTC	4 cut(s)	523, 1038, 1455, 1571
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	6 cut(s)	393, 1235, 1269, 1335, 1370, 1682
MslI	CAYNNNNRTG	1 cut(s)	1961
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	2042
MspI	CCGG	5 cut(s)	23, 74, 305, 2011, 2024
MspR9I	CCNGG	4 cut(s)	288, 1248, 1485, 2024
Mva1269I	GAATGC	2 cut(s)	1494, 1571
MvaI	CCWGG	3 cut(s)	288, 1248, 1485
MvnI	CGCG	2 cut(s)	1834, 1887
MwoI	GCNNNNNNNGC	7 cut(s)	26, 194, 661, 901, 1004, 1106, 1931
NciI	CCSGG	1 cut(s)	2024
NcoI	CCATGG	1 cut(s)	924
NdeI	CATATG	1 cut(s)	2047
NdeII	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
NlaIII	CATG	8 cut(s)	84, 214, 592, 766, 928, 1396, 1480, 1865
NlaIV	GGNNCC	6 cut(s)	94, 309, 760, 1092, 1155, 1482
NmuCI	GTSAC	2 cut(s)	1408, 2018
PaeR7I	CTCGAG	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	1599
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	1494, 1571
PdmI	GAANNNNTTC	4 cut(s)	523, 1038, 1455, 1571
PfeI	GAWTC	6 cut(s)	77, 533, 701, 1451, 1839, 1941
PkrI	GCNGC	8 cut(s)	28, 57, 104, 187, 190, 894, 1357, 2044
PleI	GAGTC	2 cut(s)	1077, 1749
PpsI	GAGTC	2 cut(s)	1077, 1749
Psp1406I	AACGTT	1 cut(s)	1418
Psp6I	CCWGG	3 cut(s)	286, 1246, 1483
PspEI	GGTNACC	1 cut(s)	2018
PspGI	CCWGG	3 cut(s)	286, 1246, 1483
PspN4I	GGNNCC	6 cut(s)	94, 309, 760, 1092, 1155, 1482
PspPI	GGNCC	4 cut(s)	592, 759, 935, 1741
PspXI	VCTCGAGB	1 cut(s)	1074
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	980, 1556
PvuII	CAGCTG	1 cut(s)	2042
RsaI	GTAC	6 cut(s)	354, 1092, 1311, 1905, 2037, 2060
RsaNI	GTAC	6 cut(s)	353, 1091, 1310, 1904, 2036, 2059
RseI	CAYNNNNRTG	1 cut(s)	1961
SapI	GCTCTTC	1 cut(s)	1599
SaqAI	TTAA	6 cut(s)	393, 1235, 1269, 1335, 1370, 1682
SatI	GCNGC	8 cut(s)	27, 56, 103, 186, 189, 893, 1356, 2043
Sau3AI	GATC	5 cut(s)	980, 1556, 1748, 1858, 1888
Sau96I	GGNCC	4 cut(s)	592, 759, 935, 1741
SchI	GAGTC	2 cut(s)	1078, 1749
ScrFI	CCNGG	4 cut(s)	288, 1248, 1485, 2024
SduI	GDGCHC	3 cut(s)	657, 1287, 2031
SexAI	ACCWGGT	1 cut(s)	1246
SfaNI	GCATC	4 cut(s)	427, 490, 1292, 1838
SfcI	CTRYAG	4 cut(s)	180, 186, 369, 1598
Sfr274I	CTCGAG	1 cut(s)	1074
SinI	GGWCC	3 cut(s)	592, 759, 935
SlaI	CTCGAG	1 cut(s)	1074
SmiMI	CAYNNNNRTG	1 cut(s)	1961
SmlI	CTYRAG	2 cut(s)	626, 1074
SmoI	CTYRAG	2 cut(s)	626, 1074
Sse9I	AATT	8 cut(s)	806, 1014, 1145, 1375, 1431, 1442, 1635, 1780
SsiI	CCGC	6 cut(s)	26, 55, 89, 565, 1885, 1988
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	286, 1246, 1483, 2022
StyI	CCWWGG	4 cut(s)	924, 1426, 1737, 1744
TaaI	ACNGT	4 cut(s)	299, 509, 1496, 1806
TaiI	ACGT	6 cut(s)	526, 959, 1421, 1661, 1690, 1912
TaqI	TCGA	5 cut(s)	542, 835, 1075, 1631, 1842
TasI	AATT	8 cut(s)	806, 1014, 1145, 1375, 1431, 1442, 1635, 1780
TatI	WGTACW	3 cut(s)	352, 1309, 2058
TauI	GCSGC	2 cut(s)	29, 58
TfiI	GAWTC	6 cut(s)	77, 533, 701, 1451, 1839, 1941
Tru1I	TTAA	6 cut(s)	393, 1235, 1269, 1335, 1370, 1682
Tru9I	TTAA	6 cut(s)	393, 1235, 1269, 1335, 1370, 1682
TscAI	CASTG	4 cut(s)	868, 1365, 1540, 1825
TseFI	GTSAC	2 cut(s)	1408, 2018
TseI	GCWGC	6 cut(s)	102, 185, 188, 892, 1355, 2042
Tsp45I	GTSAC	2 cut(s)	1408, 2018
TspDTI	ATGAA	5 cut(s)	110, 211, 423, 435, 1945
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	4 cut(s)	868, 1365, 1540, 1825
VneI	GTGCAC	2 cut(s)	1283, 2027
VpaK11BI	GGWCC	3 cut(s)	592, 759, 935
XagI	CCTNNNNNAGG	1 cut(s)	1514
XapI	RAATTY	3 cut(s)	806, 1145, 1431
XcmI	CCANNNNNNNNNTGG	3 cut(s)	512, 769, 980
XhoI	CTCGAG	1 cut(s)	1074
XmnI	GAANNNNTTC	4 cut(s)	523, 1038, 1455, 1571
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.