Rh4CG300700

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
56114741 .. 56119939
5199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG300700.1

Sequence Viewer

Length: 1512 bp
ATGCTGGGCAAAGCTCCTGCTCCAGTAGTAAACCACCTATGGCCAAAACGCATTGACCCAGAATGGATGGTGGCTCAGCACCACTGCAGGTGTACTGTCCACCCCCATCAGATTAGAAAATGGGGAATAAGTTGCAGTTTGGGTCAGAAAGCCATGGATAACTCCGCTGCTGCTTATGACCTTATGGATGATTTCATTGTATTGGGTGCAACCAAGAATGACTCTTCTGTAGTCCGTGACTCTCCCAAAACCAATACCAGAGATAATGACCGTCAACAGGCGGCAACTACTAGGAGAGTTGCCAAAGTTGGCGGAGGTTTTGGGAGATTGAAAGTGCAAAGAGTGAAATCTGTAGTGGATAAAGCTTCTCCGGTGAAGCGAGACATGGATGAAAGTGAAAATGAACTAGATGTGCAGGATACATCACCATTTATCTCTACAATTGAAGGTATGGGGAAGAAGAAGAAAGCAAATGCCATGAGTCGTGGAGGGAGACTTTCAAATCCTTCCAACTCACATGAGTTTAGGGACGCATTGCGTAAGAAGGAACAAACAGATTACAAGGACAATTCTAGAGTAACTACGAAAGATTTTTTTGAGCCACTCCCTGAGAGTCGGCATAAACCATATATGCGTCAGAAGCCTAACACCATCGTAGATCGACGAAAGGCTTCAGTTTCAAGAAAAGGATGGGGTAGTGGAGGGTCCATACGTGAATCATCAGAGTATCCAGACCTAGACCAACGAAGGAGAGTGTCCAATGATGGTGGCTTTTTCAGTCGAAAATCCTTTAGGGATGTGGGATGCAGTGAGTATATGATTGAATGTCTAAGGAAGCAGCTTTTCCAGCGTCCATCACATATTCAGGCCATGGCGTTTGCTCCAGTTGTTGCTGGAAAAACCTCTATTATAGCTGACCAAAGTGGATCTGGCAAAACATTGGCTTATCTTGCTCCTGTCATTCAACGTTTAAGGGATGAAGAACTTCAAGGACTGAGCAAGTCCTCATCAAAGAGTCCTCGATTAGTTGTATTAGTTCCGACTGCGGAATTGGCTTCTCAGGTTTTGGGTAATTGCCGATCAATATCAAAATTTGGAGTTCCTGTCAGGTCAATGGTTGTAACAGGCGGTCATCGACAGAAAACTCAGCTGGAAAGTTTGCAAGAAGGTGTTGATGTTCTAATTGCAACCCCAGGTCGATTTATATATCTAATTAAGGAGGGCTTCTTGCAATTGTCAAATCTAAGATGTGCTGTACTGGATGAGGTAGATATACTCTTTAATGATGAGGATTTTGAAGCAGCACTGCAAAGTTTAATCAATTCCTCACCTGTAACCACACAATATCTTTTTGTCACTGCAACTTTACCACTTGGCATTTACAACAAGTTAGTTGAAGATTTTCCTGATTGTCAAGTGGTCATGGCACCTGGAATGCACCGGATAAGCCCTGGCCTTGAAGAGGTTGGTTTACTAACGTTGTGGATTTTAAACTTTGGTCCTGCTATTTAG

Protein Analysis

503

Amino Acids

55.96

Weight (kDa)

9.33

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 287 - 457 7.6e-33 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 1426
AciI CCGC 5 cut(s) 165, 281, 312, 1046, 1128
AclI AACGTT 2 cut(s) 967, 1478
AclWI GGATC 1 cut(s) 934
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 1091
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 2 cut(s) 94, 1257
AfiI CCNNNNNNNGG 2 cut(s) 277, 1462
AjnI CCWGG 3 cut(s) 1192, 1429, 1450
AluBI AGCT 5 cut(s) 14, 365, 841, 914, 1150
AluI AGCT 5 cut(s) 14, 365, 841, 914, 1150
Alw26I GTCTC 2 cut(s) 375, 487
AlwI GGATC 1 cut(s) 934
AoxI GGCC 3 cut(s) 41, 867, 1453
ApeKI GCWGC 4 cut(s) 167, 170, 838, 1301
ApoI RAATTY 1 cut(s) 1091
Asp700I GAANNNNTTC 3 cut(s) 670, 984, 1401
AspS9I GGNCC 2 cut(s) 705, 1499
AsuHPI GGTGA 3 cut(s) 385, 417, 1320
AvaII GGWCC 2 cut(s) 705, 1499
BalI TGGCCA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 1426
BbvI GCAGC 4 cut(s) 154, 157, 850, 1313
BccI CCATC 6 cut(s) 61, 114, 659, 684, 758, 862
BciT130I CCWGG 3 cut(s) 1194, 1431, 1452
BciVI GTATCC 2 cut(s) 412, 738
BcoDI GTCTC 2 cut(s) 375, 487
BfaI CTAG 4 cut(s) 291, 407, 573, 737
BfmI CTRYAG 3 cut(s) 85, 228, 351
BfuAI ACCTGC 1 cut(s) 78
BfuI GTATCC 2 cut(s) 412, 738
BisI GCNGC 5 cut(s) 168, 171, 282, 839, 1302
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 5 cut(s) 169, 172, 283, 840, 1303
Bme1390I CCNGG 3 cut(s) 1194, 1431, 1452
Bme18I GGWCC 2 cut(s) 705, 1499
BmgT120I GGNCC 2 cut(s) 705, 1499
BmiI GGNNCC 2 cut(s) 706, 1428
BmrFI CCNGG 3 cut(s) 1194, 1431, 1452
BmsI GCATC 1 cut(s) 794
BpmI CTGGAG 2 cut(s) 6, 867
Bpu1102I GCTNAGC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 1084
BsaJI CCNNGG 4 cut(s) 153, 870, 1192, 1450
BsaWI WCCGGW 2 cut(s) 370, 1440
BsaXI ACNNNNNCTCC 2 cut(s) 1089, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 1462
Bse1I ACTGG 3 cut(s) 23, 884, 1263
Bse3DI GCAATG 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 1084
BseBI CCWGG 3 cut(s) 1194, 1431, 1452
BseDI CCNNGG 4 cut(s) 153, 870, 1192, 1450
BseGI GGATG 8 cut(s) 72, 193, 394, 695, 802, 809, 982, 1267
BseJI GATNNNNATC 1 cut(s) 1084
BseLI CCNNNNNNNGG 2 cut(s) 277, 1462
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 5 cut(s) 89, 600, 986, 1073, 1160
BseNI ACTGG 3 cut(s) 23, 884, 1263
BseXI GCAGC 4 cut(s) 154, 157, 850, 1313
BseYI CCCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 434
BshFI GGCC 3 cut(s) 43, 869, 1455
BshNI GGYRCC 1 cut(s) 1426
BsiSI CCGG 2 cut(s) 371, 1441
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 277, 1462
BsmAI GTCTC 2 cut(s) 375, 487
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 1440
BsnI GGCC 3 cut(s) 43, 869, 1455
Bsp143I GATC 3 cut(s) 658, 926, 1079
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 2 cut(s) 153, 870
BspACI CCGC 5 cut(s) 165, 281, 312, 1046, 1128
BspANI GGCC 3 cut(s) 43, 869, 1455
BspCNI CTCAG 5 cut(s) 88, 601, 987, 1072, 1159
BspLI GGNNCC 2 cut(s) 706, 1428
BspMAI CTGCAG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 934
BspT107I GGYRCC 1 cut(s) 1426
BsrDI GCAATG 1 cut(s) 533
BsrI ACTGG 3 cut(s) 23, 884, 1263
BssECI CCNNGG 4 cut(s) 153, 870, 1192, 1450
BssMI GATC 3 cut(s) 658, 926, 1079
BssT1I CCWWGG 2 cut(s) 153, 870
Bst2UI CCWGG 3 cut(s) 1194, 1431, 1452
Bst4CI ACNGT 2 cut(s) 97, 272
Bst6I CTCTTC 2 cut(s) 229, 1455
BstBAI YACGTR 1 cut(s) 713
BstDEI CTNAG 7 cut(s) 75, 609, 830, 995, 1059, 1146, 1244
BstDSI CCRYGG 2 cut(s) 153, 870
BstENI CCTNNNNNAGG 1 cut(s) 1460
BstF5I GGATG 8 cut(s) 72, 193, 394, 695, 802, 809, 982, 1267
BstKTI GATC 3 cut(s) 661, 929, 1082
BstMAI GTCTC 2 cut(s) 375, 487
BstMBI GATC 3 cut(s) 658, 926, 1079
BstMWI GCNNNNNNNGC 4 cut(s) 640, 847, 950, 1052
BstNI CCWGG 3 cut(s) 1194, 1431, 1452
BstSCI CCNGG 3 cut(s) 1192, 1429, 1450
BstSFI CTRYAG 3 cut(s) 85, 228, 351
BstV1I GCAGC 4 cut(s) 154, 157, 850, 1313
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BsuI GTATCC 2 cut(s) 412, 738
BsuRI GGCC 3 cut(s) 43, 869, 1455
BtgI CCRYGG 2 cut(s) 153, 870
BtsCI GGATG 8 cut(s) 72, 193, 394, 695, 802, 809, 982, 1267
BtsI GCAGTG 4 cut(s) 82, 814, 1304, 1356
BtsIMutI CAGTG 4 cut(s) 82, 814, 1304, 1356
BveI ACCTGC 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 705, 1499
CseI GACGC 3 cut(s) 539, 623, 839
Csp6I GTAC 2 cut(s) 93, 1256
CspCI CAANNNNNGTGG 2 cut(s) 748, 783
CviAII CATG 6 cut(s) 154, 385, 478, 518, 871, 1423
CviQI GTAC 2 cut(s) 93, 1256
DdeI CTNAG 7 cut(s) 75, 609, 830, 995, 1059, 1146, 1244
DpnI GATC 3 cut(s) 660, 928, 1081
DpnII GATC 3 cut(s) 658, 926, 1079
DraI TTTAAA 1 cut(s) 1491
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 229, 1455
EarI CTCTTC 2 cut(s) 229, 1455
EciI GGCGGA 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 153, 870
Eco47I GGWCC 2 cut(s) 705, 1499
Eco57I CTGAAG 1 cut(s) 657
EcoNI CCTNNNNNAGG 1 cut(s) 1460
EcoRII CCWGG 3 cut(s) 1192, 1429, 1450
EcoT14I CCWWGG 2 cut(s) 153, 870
ErhI CCWWGG 2 cut(s) 153, 870
FaeI CATG 6 cut(s) 157, 388, 481, 521, 874, 1426
FalI AAGNNNNNCTT 2 cut(s) 1208, 1240
FaqI GGGAC 1 cut(s) 542
FatI CATG 6 cut(s) 153, 384, 477, 517, 870, 1422
Fnu4HI GCNGC 5 cut(s) 168, 171, 282, 839, 1302
FokI GGATG 8 cut(s) 79, 200, 401, 702, 809, 816, 989, 1274
Fsp4HI GCNGC 5 cut(s) 168, 171, 282, 839, 1302
FspBI CTAG 4 cut(s) 291, 407, 573, 737
GluI GCNGC 5 cut(s) 168, 171, 282, 839, 1302
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 2 cut(s) 6, 867
HaeIII GGCC 3 cut(s) 43, 869, 1455
HapII CCGG 2 cut(s) 371, 1441
HgaI GACGC 3 cut(s) 539, 623, 839
Hin1II CATG 6 cut(s) 157, 388, 481, 521, 874, 1426
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 6 cut(s) 221, 239, 481, 613, 716, 1015
HpaII CCGG 2 cut(s) 371, 1441
HphI GGTGA 3 cut(s) 385, 417, 1320
Hpy166II GTNNAC 5 cut(s) 31, 93, 100, 275, 1472
Hpy188I TCNGA 5 cut(s) 111, 147, 639, 724, 1041
Hpy188III TCNNGA 4 cut(s) 573, 681, 731, 1406
Hpy8I GTNNAC 5 cut(s) 31, 93, 100, 275, 1472
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 5 cut(s) 440, 516, 538, 741, 1160
HpyCH4III ACNGT 2 cut(s) 97, 272
HpyCH4IV ACGT 3 cut(s) 712, 967, 1478
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 847, 950, 1052
HpyF3I CTNAG 7 cut(s) 75, 609, 830, 995, 1059, 1146, 1244
HpySE526I ACGT 3 cut(s) 712, 967, 1478
Hsp92II CATG 6 cut(s) 157, 388, 481, 521, 874, 1426
Kzo9I GATC 3 cut(s) 658, 926, 1079
LmnI GCTCC 4 cut(s) 19, 25, 886, 958
Lsp1109I GCAGC 4 cut(s) 154, 157, 850, 1313
LweI GCATC 1 cut(s) 794
MaeI CTAG 4 cut(s) 291, 407, 573, 737
MaeII ACGT 3 cut(s) 712, 967, 1478
MaeIII GTNAC 5 cut(s) 236, 577, 1120, 1333, 1354
MalI GATC 3 cut(s) 660, 928, 1081
MboI GATC 3 cut(s) 658, 926, 1079
MboII GAAGA 7 cut(s) 216, 469, 472, 475, 992, 1409, 1472
MfeI CAATTG 2 cut(s) 441, 1232
MflI RGATCY 1 cut(s) 926
MlsI TGGCCA 1 cut(s) 43
MluCI AATT 9 cut(s) 441, 568, 1049, 1072, 1091, 1182, 1212, 1232, 1321
MluNI TGGCCA 1 cut(s) 43
MlyI GAGTC 5 cut(s) 215, 233, 490, 622, 1024
MmeI TCCRAC 2 cut(s) 534, 1064
Mox20I TGGCCA 1 cut(s) 43
MroXI GAANNNNTTC 3 cut(s) 670, 984, 1401
MscI TGGCCA 1 cut(s) 43
MseI TTAA 5 cut(s) 971, 1215, 1281, 1316, 1490
Msp20I TGGCCA 1 cut(s) 43
MspA1I CMGCKG 2 cut(s) 167, 1150
MspI CCGG 2 cut(s) 371, 1441
MspR9I CCNGG 3 cut(s) 1194, 1431, 1452
MunI CAATTG 2 cut(s) 441, 1232
Mva1269I GAATGC 1 cut(s) 1440
MvaI CCWGG 3 cut(s) 1194, 1431, 1452
MwoI GCNNNNNNNGC 4 cut(s) 640, 847, 950, 1052
NcoI CCATGG 2 cut(s) 153, 870
NdeII GATC 3 cut(s) 658, 926, 1079
NlaIII CATG 6 cut(s) 157, 388, 481, 521, 874, 1426
NlaIV GGNNCC 2 cut(s) 706, 1428
NmuCI GTSAC 2 cut(s) 236, 1354
PaqCI CACCTGC 1 cut(s) 78
PctI GAATGC 1 cut(s) 1440
PdmI GAANNNNTTC 3 cut(s) 670, 984, 1401
PfeI GAWTC 1 cut(s) 716
PkrI GCNGC 5 cut(s) 169, 172, 283, 840, 1303
PleI GAGTC 5 cut(s) 215, 233, 489, 621, 1023
PpsI GAGTC 5 cut(s) 215, 233, 489, 621, 1023
Ppu21I YACGTR 1 cut(s) 713
Psp1406I AACGTT 2 cut(s) 967, 1478
Psp6I CCWGG 3 cut(s) 1192, 1429, 1450
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 1192, 1429, 1450
PspN4I GGNNCC 2 cut(s) 706, 1428
PspPI GGNCC 2 cut(s) 705, 1499
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 1150
RsaI GTAC 2 cut(s) 94, 1257
RsaNI GTAC 2 cut(s) 93, 1256
SaqAI TTAA 5 cut(s) 971, 1215, 1281, 1316, 1490
SatI GCNGC 5 cut(s) 168, 171, 282, 839, 1302
Sau3AI GATC 3 cut(s) 658, 926, 1079
Sau96I GGNCC 2 cut(s) 705, 1499
SchI GAGTC 5 cut(s) 215, 233, 490, 622, 1024
ScrFI CCNGG 3 cut(s) 1194, 1431, 1452
SfaNI GCATC 1 cut(s) 794
SfcI CTRYAG 3 cut(s) 85, 228, 351
SinI GGWCC 2 cut(s) 705, 1499
Sse9I AATT 9 cut(s) 441, 568, 1049, 1072, 1091, 1182, 1212, 1232, 1321
SsiI CCGC 5 cut(s) 165, 281, 312, 1046, 1128
SspMI CTAG 4 cut(s) 291, 407, 573, 737
StyD4I CCNGG 3 cut(s) 1192, 1429, 1450
StyI CCWWGG 2 cut(s) 153, 870
TaaI ACNGT 2 cut(s) 97, 272
TaiI ACGT 3 cut(s) 715, 970, 1481
TaqI TCGA 5 cut(s) 661, 781, 1021, 1135, 1198
TasI AATT 9 cut(s) 441, 568, 1049, 1072, 1091, 1182, 1212, 1232, 1321
TatI WGTACW 2 cut(s) 92, 1255
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 5 cut(s) 971, 1215, 1281, 1316, 1490
Tru9I TTAA 5 cut(s) 971, 1215, 1281, 1316, 1490
TscAI CASTG 4 cut(s) 89, 814, 1311, 1363
TseFI GTSAC 2 cut(s) 236, 1354
TseI GCWGC 4 cut(s) 167, 170, 838, 1301
Tsp45I GTSAC 2 cut(s) 236, 1354
TspDTI ATGAA 4 cut(s) 184, 405, 417, 993
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 4 cut(s) 89, 814, 1311, 1363
VpaK11BI GGWCC 2 cut(s) 705, 1499
XagI CCTNNNNNAGG 1 cut(s) 1460
XapI RAATTY 1 cut(s) 1091
XbaI TCTAGA 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmnI GAANNNNTTC 3 cut(s) 670, 984, 1401
XspI CTAG 4 cut(s) 291, 407, 573, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.